BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33450.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353481 jgi|Araly1|353481|fgenesh1_pg.C_scaffold_7000654 1208 0.0
> Ahg353481 jgi|Araly1|353481|fgenesh1_pg.C_scaffold_7000654
Length=753
Score = 1208 bits (654), Expect = 0.0
Identities = 721/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 8 ATGGAGATGTCTAGAGGAAGCAACAGTTTTGACAATAAGAAGCCTAGTTGCCAAAGAGGT 67
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAAATGTCTAGAGGAAGCAACAGTTTTGACAATAAGAAGCCTAGTTGCCAGAGAGGT 60
Query 68 CACTGGAGACCTGTTGAAGATGACAATCTCCGGCAACTCGTTGAACAATACGGTCCCAAG 127
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CACTGGAGACCTGTTGAAGACGACAATCTCCGGCAACTCGTTGAGCAATACGGTCCCAAG 120
Query 128 AACTGGAATTTTATTGCTCAACATCTCTATGGAAGATCAGGGAAAAGCTGTAGATTAAGA 187
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AACTGGAATTTCATTGCTCAACATCTCTATGGAAGATCAGGGAAAAGCTGTAGATTGAGA 180
Query 188 TGGTACAACCAACTTGATCCAAACATCACCAAGAAACCCTTCACCGAGGAGGAAGAAGAG 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGTACAACCAACTTGATCCAAACATCACCAAGAAACCCTTCACCGAGGAAGAAGAAGAG 240
Query 248 AGACTGCTTAAAGCTCATCGGATCCAAGGGAATCGTTGGGCCTCCATAGCCCGACTGTTC 307
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AGACTGCTTAAAGCTCATCGGATCCAGGGGAATCGTTGGGCCTCCATAGCCCGACTGTTC 300
Query 308 CCCGGGAGGACCGACAACGCTGTCAAAAACCATTTTCATGTCATCATGGCTAGACGCAAA 367
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCTGGGAGGACGGACAACGCTGTCAAGAACCATTTTCATGTCATCATGGCTAGACGCAAA 360
Query 368 CGGGAAAACTTCTCTTCCACGGCTACTTCTACGTTCAACCAAACTTGGCATACTGTTTTG 427
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 361 CGCGAAAACTTCTCTTCCACGGCTACTTCTACTTTCAACCAAACTTGGCATAATGTTTTG 420
Query 428 AGCCCTAGTTCTAGTCTTACAAGGCTAAATAGATCCCA-TTTCGGGCTATGGAGGTATCG 486
||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct 421 AGCCCTAGTTCTAGTATTACAAGGCTTAATAGATCCCAGTTT-GGGCTATGGAGGTACCG 479
Query 487 AAAGGATAAGAGTTGCGGTCTCTGGCCTTACTCTTTTGTTTCACCACCTACGAATGGTCA 546
|||||||||||| || ||||||||||||||||||||||||| |||||| |||| |||
Sbjct 480 GAAGGATAAGAGTCACGATCTCTGGCCTTACTCTTTTGTTTCAGCACCTATAAATGATCA 539
Query 547 ATTTGGATCTTCATCTGTCTCTAACGTACACCACGAAATTTATCTTGAGAGGAGAAAGTC 606
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 ATTTGGATCTTCATCTGTCTCTAACGTACGCCACGAAATTTATCTTGAGAGGAGAAAGTC 599
Query 607 GAAAGAGTTGGTGGATCCTCAGAATTACACATTTCATGCAGCCACACCAGATCATAAGAT 666
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 GAAAGAGTTGGTGGATGATCACAATTACACATTTCATGCAGCCACACCAGATCATAAGAA 659
Query 667 GACTTCAAATGAAGATGGACCATCCATGGGAGATGATGGTGAGAAGAACGATGTTACTTT 726
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 GACTTCAAATGAAGATGGACCATCCATTGGAGATGATGGTGAGAAGAACGATGTTACTTT 719
Query 727 CATTGATTTTCTTGGTGTTGGATTAGCTTCTTAG 760
||||||||||||||||||||||||||||||||||
Sbjct 720 CATTGATTTTCTTGGTGTTGGATTAGCTTCTTAG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5