BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33460.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491344 jgi|Araly1|491344|fgenesh2_kg.7__777__AT4G33460.1 1435 0.0
> Ahg491344 jgi|Araly1|491344|fgenesh2_kg.7__777__AT4G33460.1
Length=1091
Score = 1435 bits (777), Expect = 0.0
Identities = 925/994 (93%), Gaps = 20/994 (2%)
Strand=Plus/Plus
Query 50 TCGATTCGACGAAGC-TTATTTTTATGGTTTTGCGA-G--gaagaagaagaagaaggaag 105
||||||||||||| | || |||| ||||||||| || | ||||||||||||||||||||
Sbjct 19 TCGATTCGACGAAACATT-TTTTGATGGTTTTGGGAGGAAGAAGAAGAAGAAGAAGGAAG 77
Query 106 CTGCAATTTCAAGTCTTTAAAGAGAATTCTTGAAAATCCTTAAGAGAAATGAATGGTCAC 165
|||||| ||| |||| ||| | || | | ||| ||| || |||||||||| ||
Sbjct 78 CTGCAACTTCTAGTC-TTATTGTTAA--C-AGCGAATTCTT--GA-AAATGAATGGCCAG 130
Query 166 TGTTTATTTGCAGCATCTCCTCCTCGTCTCTTCCCTCTT--C-GCTCTATATCATCGAGT 222
|||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 131 TGTTTATTTGCAGCATCTCCTCCTCGTCTCATCCCTCTTCGCTGCTCTATATCATCGAGT 190
Query 223 GTTTCTCCATCCGGTAGTTACAGAATCAAATTCTCCGATAATGTCGCCGTTGAGTGTCGG 282
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GTTTCTCCATCCGGCAGTTACAGAATCAAATTCTCCGATAATGTCGCCGTTGAGTGTCGG 250
Query 283 AATCTCTGTTTCTCCGTTAGTACAAGACAAGGTATATCTGTTCCTATTCTCCGTGATTGC 342
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 251 AATCTCTGTTTCTCCGTTAGTACAAGACAAGGCATATCTGTTCCTATCCTCCGTGATTGC 310
Query 343 TCCTTTCGGATTCCTTCTGGACAATTGTGGATGATTCTTGGTCCTAATGGCTGTGGCAAA 402
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 311 TCCTTTCGAATTCCTTCTGGACAATTGTGGATGATTCTTGGTCCCAATGGCTGTGGTAAA 370
Query 403 TCCACCCTTTTGAAGATTTTAGCTGGTGTAGTGAATCCATCCAGTGGCACTGTCTTTGTG 462
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 371 TCTACCCTTTTGAAGATTTTAGCCGGTGTAGTGAATCCATCCAGCGGCACTGTCTTTGTG 430
Query 463 GAGAAGCCGAAGAATTTTGTATTTCAGAATCCTGATCATCAGGTAGTGATGCCTACAGTG 522
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GAGAAGCCCAAGAATTTTGTATTTCAGAATCCTGATCATCAGGTAGTGATGCCTACAGTA 490
Query 523 GAAGCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GAAGCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAG 550
Query 583 TCTAGGGTGATTAAAGCTTTGGAGGCTGTTGGTATGCGTGATTATATGCAGAGACCGATT 642
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 551 TCTAGGGTGATTAAAGCTTTGGAGGCAGTTGGTATGCGTGATTATATGCAGAGACCGATT 610
Query 643 CAAACTCTCAGTGGTGGTCAGAAACAAAGAATTGCCATTGCTGGTGCTTTAGCTGAAGCG 702
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 611 CAAACTCTCAGTGGTGGTCAGAAACAAAGAATAGCCATTGCTGGTGCTTTAGCTGAAGCT 670
Query 703 TGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAGTCTGACCAGATGGGT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCCTAGATGAGTCTGACCAGATGGGT 730
Query 763 GTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGG 822
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GTGATCAAAGCTGTGAAGGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGG 790
Query 823 GTGACACATAGGTTAGAGGAGCTCAAGTATGCGGATGGAGCTGTGTATATGGAGAACGGT 882
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 791 GTGACACATCGGTTAGAGGAGCTCAAGTATGCTGATGGAGCTGTGTATATGGAGAACGGT 850
Query 883 AGAGTGGTCAGACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAATCG 942
||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 851 AGAGTAGTCAGGCATGGTAATGCAGCCGCCATCTCAGATTTCATTAAAGCCAAACAATCA 910
Query 943 TCTTACATTGATCAAATTGGTTCTTAACTTCCTTTGCTAAGGAttttttt-CTTTATTAC 1001
||||||||||||||||||||||||||||||||| || || | |||||||| |||| |||
Sbjct 911 TCTTACATTGATCAAATTGGTTCTTAACTTCCTCTGTTACG-ATTTTTTTTCTTTCTTAA 969
Query 1002 CTCtatat-atatataGAGGTAATGAAAAGTCGA 1034
|| | | ||||||||||| |||||||| |||
Sbjct 970 -TCGA-AGCATATATAGAGGCCATGAAAAGCCGA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5