BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33467.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491342 jgi|Araly1|491342|fgenesh2_kg.7__775__AT4G33467.1 686 0.0
> Ahg491342 jgi|Araly1|491342|fgenesh2_kg.7__775__AT4G33467.1
Length=482
Score = 686 bits (371), Expect = 0.0
Identities = 457/495 (92%), Gaps = 20/495 (4%)
Strand=Plus/Plus
Query 21 TTTCTTCTTATATATAGAATCAATCAAAAGACTTTGAGAGATATTCATCAAAACtttttg 80
||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||
Sbjct 1 TTTCTTCTTATATATAGAATCAATC-ATAGACTGTGAGAGATATTCATCAACACTTTTTG 59
Query 81 ttttgtttttCAAGCTATAAAATCTGAGAGATATGGAAGTAAGCAAGAGAATGGACATGT 140
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTTG-TTTCCAAGCTATAAAGTCTGAGAGATATGGAAGTAAGCAAGAGAATGGACATGT 118
Query 141 TAGAGAGGAGGTCTTCGATAGAGACAGAGCCAATGACATTGCATCTCGATCAATTAGAAA 200
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 TAGAGAGGAGGTCTTCGATAGAGACAGAGCCCATGACATTGCATCTCGATCAATTAGAAA 178
Query 201 ATGCTCGAGAAGAAGCA-TTGTATGTGATGAAAACAAAAACAATGGAGGAAGCTATGGAT 259
||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct 179 ATGCTCGAGAAGAAGCAATT-TATGTGATGAAAACGAAGACAATGGAGGAAGCTATGGAT 237
Query 260 ATTTTTACAAAGCAGGAGACGCATGAGGGGTTACGAGCTAGTGAAGAAAGAGGAGGGA-G 318
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | |
Sbjct 238 ATTTTCACAAAGCAGGAGACGCATGAGGGTTTAAGAGCTAGTGAAGAAAGAGGAGG-ACG 296
Query 319 ATGCATAAATCTGAAGGATGAGGAGGATGATGATGATTATGAAGACGAAAGAATGATGTT 378
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 297 ATGCATAAATCTGAAGGATGAGGA---TGATGATGAT---GAAGACGAAAGAATGACGTT 350
Query 379 TATGAGTCCTCATGCTTGGGACATT-CATACCGCTCCTTTCTAATTTAGTAATTTGTAAC 437
|||||||||||||| |||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 351 TATGAGTCCTCATGGTTGGGACATTGC-TACAGCTCCTTTCTAATTTAGTAATTTGTAAA 409
Query 438 CTCttttttttGGCTCTTTGATTTTCAGTTTTCCTAT---ACTCCTTGG-TCTTTTTGTA 493
||||||||| | ||||||||| |||||||||||||| | ||||||| ||||||||||
Sbjct 410 CTCTTTTTTGT--CTCTTTGATGTTCAGTTTTCCTATGGTAGTCCTTGGATCTTTTTGTA 467
Query 494 AATATCTGAATACTT 508
|||||||||||||||
Sbjct 468 AATATCTGAATACTT 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5