BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33470.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944585 jgi|Araly1|944585|scaffold_700814.1 2017 0.0
> Ahg944585 jgi|Araly1|944585|scaffold_700814.1
Length=1306
Score = 2017 bits (1092), Expect = 0.0
Identities = 1229/1297 (95%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 41 CTTGAGGGAAACTCATGTCCATGGCGCTAATTGTCCGGCCATTCTTTGTTCCTGGAAGTG 100
|||||||| ||||| |||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 1 CTTGAGGGGAACTCCTGTCCATGGCGCTAGTTGTCCGACCACTCTTTGTTCCTGGAAGTG 60
Query 101 CTGGAATTTCTGGGAGTAGAAACATATGCAAGAAAAATCAATGGAGGAAGTATCTTCTGA 160
|||| |||||||||| |||| ||||||||||||||||||| | ||||||||||||| |||
Sbjct 61 CTGGGATTTCTGGGACTAGAGACATATGCAAGAAAAATCAGTCGAGGAAGTATCTTTTGA 120
Query 161 AACCCAGTGGATCATCCATTAATTGCTCATTTAGTACAGAGAAGAATCCTCTATTACCAT 220
|||||| |||| | ||| |||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 121 AACCCAATGGAGCTTCCGTTAATTGCTCATTTAGTACAGAGAAGGATCCTCTCTTACCGT 180
Query 221 CTATCCAGCAGTTAGCCGATGCTCGTCTCATATACAGTGTATCTGCAGCATTGGGTCATA 280
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CTATCCAGCAGTTAACCGATGCTCGTCTCATATATAGTGTATCTGCAGCATTGGGTCATA 240
Query 281 ACAAGGAATCACATCCAGAATGCAGCGCTAGAGTTCCTGCCATTGTTAATGCTCTCGAGA 340
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 241 ACAAGGAATCACATCCAGAATGCAGCGCAAGAGTTCCTGCCATTGTTAATGCTCTTGCGA 300
Query 341 TGAATGAGCTCACTCCTAAGTTCCGTGGCTCACAGATTCTTGAACTCGCAAATTTCAAGA 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAATGAGCTCACTCCTAAGTTCCGTGGCTCACAGATTCTTGAACTCGCAAATTTCAAGA 360
Query 401 CTGCAACTGTAGAAGACATTGCAAATGTTCACGACAAGGCTTATGTCTTTGGCCTAGAAA 460
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTGCAACTATAGAAGACATTGCAAATGTTCACGACAAGGCTTATGTCTTTGGCCTAGAGA 420
Query 461 AGGCAATGGATGAGGCTTCAGATTCGGGACTAATTTTCATTGAAGGCTCTGGACCAACAT 520
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 421 AGGCAATGGATGAGGCTTCAGATTCGGGGCTAATATTCATCGAAGGATCTGGACCAACAT 480
Query 521 ATGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCCGGAATGGCTTTAG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCCGGAATGGCTTTAG 540
Query 581 TTGATTCAGTGATCGCAGCATCCAGAAACAGCGTAGATCCACCCATTGGTTTTGCATTGA 640
||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 541 TTGATTCAGTGATAGCAGCATCCAGAAACAGCCCAGATCCACCCACTGGTTTTGCATTGA 600
Query 641 TAAGACCTCCTGGGCACCACGCCGTGCCAAAAGGTCCGATGGGGTTCTGTGTTTTTGGTA 700
|||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 601 TAAGACCTCCAGGACACCACGCCGTGCCAAAAGGTCCAATGGGGTTCTGCGTTTTTGGTA 660
Query 701 ATGTGGCAATCGCAGCTCGTCATGCCCAACGCACACATGGTCTGAAGCGCATCTTCATAA 760
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 661 ATGTGGCAATCGCAGCTCGTCACGCCCAACGCACACATGGTCTGAAGCGCGTCTTCATAA 720
Query 761 TTGACTTCGATGTTCACCACGGGAATGGCACAAATGATGCATTTACTGAGGACCCTGATA 820
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TTGACTTTGATGTTCACCACGGGAATGGCACAAATGATGCATTTTCTGAGGACCCTGATA 780
Query 821 TATTCTTTTTGTCAACTCATCAGGACGGAAGCTACCCTGGAACAGGGAAAATCAGTGACA 880
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 781 TATTCTTTTTGTCAACTCATCAGGATGGGAGCTACCCTGGGACAGGGAAAATCAGTGACA 840
Query 881 TAGGTAAAGGAAAAGGTGAAGGTACCACTCTAAATTTACCTTTGCCTGGAGGTTCAGGTG 940
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 TAGGTAAAGGAAAAGGTGAAGGTACCACTCTAAATTTACCTTTACCTGGAGGTTCAGGTG 900
Query 941 ATATTGCAATGAGAACCGTTTTTGAAGAAATCATTGTTCCATGTGCTCAACGGTTCAAGC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 ATATTGCAATGAGAACCGTTTTTGAAGAAATCATTGTTCCATGTGCTCAACGGTTTAAGC 960
Query 1001 CAGATATTATTCTTGTTTCTGCTGGGTATGATGCTCATGTCCTGGATCCACTAGCAAATT 1060
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGACCTTATTCTTGTTTCTGCTGGGTATGATGCTCATGTCCTGGATCCACTAGCAAATC 1020
Query 1061 TACAGTTCACGACCGCAACATACTACTCATTGGCAAAAGATAT-AAAGCGGTTAGCAAAA 1119
|||| |||||||| | |||||||||||||||||||| |||||| ||| | |||||| |||
Sbjct 1021 TACAATTCACGACTGGAACATACTACTCATTGGCAAGAGATATTAAA-CAGTTAGCGAAA 1079
Query 1120 GAAGTATGCGGAGGGCGGTGTGTGTTTTTCTTGGAAGGAGGATACAATCTTGAATCACTT 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 GAAGTATGCGGAGGGCGGTGTGTGTTTTTCTTGGAAGGAGGATACAATCTTGAATCGCTT 1139
Query 1180 TCATCATCTGTGGCAGACTCGTTTCGAGCATTGCTTGGAGAAGATAGCTTGGCATCAGAG 1239
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1140 TCATCATCTGTGGCAGACTCGTTTCGAGCATTGCTCGGGGAAGAAAGCTTGGCATCAGAG 1199
Query 1240 TTTGATAACCCAGCTTACTTGTACGATGAACCAATGAGAAAGGTGCGAGATGCAATTCAG 1299
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1200 TTTGATAACCCAGCTTACCTGTATGATGAACCAATGAGAAAGGTGCGAGATGCAATTGAG 1259
Query 1300 AGAGCCAAAAGCATTCATTGCTTATAAGGTGAATTTG 1336
||||||||||| ||||||||||||||||| | |||||
Sbjct 1260 AGAGCCAAAAGTATTCATTGCTTATAAGGAGGATTTG 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5