BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33480.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491340 jgi|Araly1|491340|fgenesh2_kg.7__773__AT4G33480.1 2104 0.0
> Ahg491340 jgi|Araly1|491340|fgenesh2_kg.7__773__AT4G33480.1
Length=1337
Score = 2104 bits (1139), Expect = 0.0
Identities = 1286/1354 (95%), Gaps = 22/1354 (2%)
Strand=Plus/Plus
Query 1 AAGTAGAAATTTAGTTTTGACTGTTGTGAAGTTTCTTCTTACTCGAAAAAATCACAACTT 60
||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 1 AAGTAGAAATTTAGTTTTGACTGTTGTTAAGTGCCTTCTTACTCG-AAAAATCACAACTT 59
Query 61 TACCACAAATATCTCCGTTGCCGGCGAAATCACTTTGCTCACTCTCTCAACTTTGAAAGG 120
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 60 TACCACAAATATCTCCGTTGCCGGCGAATTCAC-TTGCTCACTCTCTCAACTCTGAAAGA 118
Query 121 AGACTCAAGTTTCTCACTTTCTCTCTTCCATGGCTTTCTCATACTCTTTAACTTCTCCGT 180
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 119 AGACCCAAGTTTCTCTCTTTCTCTCTTCCATGGCTTTCTCATACTCCTTAACTTCACCAT 178
Query 181 CACCAAATTCGACTCTCTCCTATTCCAGTACCCATCAATTTCTCAACCCGTCTTCTTCGT 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CACCAAATTCGACTCTCTCCTATTCCAATACCCATCAATTTCTCAACCCGTCTTCTTCGT 238
Query 241 TTCCCGTCTCGTTATCAGTCTCATCTCCGAAGAATACCCGCCATCTTCGTCTCCTCATCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCCCGTCTCGTTATCAGTCTCATCTCCGAAGAATACCCGCCATCTTCGTCTCCTCATCA 298
Query 301 CCTCCGCTTTGAATCCACAGACGGGACAGCCGACGAAGAAGGCCTCCACCGGTAGTGATA 360
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 299 CCTCTGCTTTGAATCCACAGACGGGACAGCCGACGAAGAAGGCCTCTACTGGTAGTGATA 358
Query 361 AGAGTAGTACGAACAAGAAACGTAAGAAAAAGGGGAAAATTGCGAAACCTGTGGAGGATT 420
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 359 ATAGTAGTACGAACAAGAAACGTAAGAAAAAGGGGAAAACTGCGAAACCTGTGGAGAATT 418
Query 421 GGGAATTGAGAGATTCAGAAGACGCTTTTGAGGAAGATGATGATGCCGATTATTCTTCTT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGAATTGAGAGATGCAGAAGACGCTTTTGAGGAAGATGATGATGCCGATTATTCTTCTT 478
Query 481 CTTCGAGTTCTCTAGCAACTTTTAACTCTCCTCCTACCATACCCAAACCACCTGCTGGGT 540
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CTTCGAGGTCTCTTGCAACATTTAACTCTCCTCCTACCATACCCAAACCACCTGCTGGCT 538
Query 541 TTGTGATTAATGAAACTGGTAGGGTTCTTATGGCCTCTAAGAAGCGTATCACCACTGTGA 600
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 TTGTGATTGATGAAACTGGTAGGGTTCTTATGGCCTCTAAGAAGCGTATCGCCACTGTGA 598
Query 601 TTGATCCAACAAACAATAGCCCTTTGGATTGTGTGATAAGAAGAGTATTTACAAGTAGTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGATCCAACAAACAATAGCCCTTTGGATTGTGTGATAAGAAGAGTATTTACAAGTAGTA 658
Query 661 AAGGAGAGGATTGTATGCTTCTTTGCCCTGTGGATACGCCAGTTCAGATTTTGAAGAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGGAGAGGATTGTATGCTTCTTTGCCCTGTGGATACGCCAGTTCAGATTTTGAAGAGCA 718
Query 721 CAAATATTGATGGATGGTCAGCTGTCAGTGATGAAGAGGTCGAATCTCTTCTTCCTGCTG 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 CAAATATTGATGGATGGTCAGCTGTCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCTG 778
Query 781 CTGCTTATGCTCTTGCAAAGATCCATATGCATCTAGTACACAGCGGGTTCTGTTACACTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGCTTATGCTCTTGCAAAGATCCATATGCATCTAGTACACAGCGGGTTCTGTTACACTG 838
Query 841 CAAGGGGAGGCTTTTGCTACACGGAAGATAATGTCTTTGATTTTCGCACAGATGATGGCC 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAGGGGAGGCTTTTGCTACACTGAAGATAATGTCTTTGATTTTCGCACAGATGATGGCC 898
Query 901 AAGATGTTGAAGGCTTGCCAACTGAAGGGGTTGAGATTACGTGTTTCCATCTGGATGGAT 960
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGGATGTTGAAGGCTTGCCAACTGAAGGGGTTGAGATTACGTGTTTCCATCTGGATGGAT 958
Query 961 CACACTATATGGTCTACACACCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCAAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 CACACTATATGGTCTACACACCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCAGA 1018
Query 1021 ATGGGCTGCTGCAAATCGCTGATGATGAACTCTTAGACGATCCAGCTGTGATCAGCGCCA 1080
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1019 ATGGGCTGCTGCAAATCGCTGATGATGAGCTGTTAGACGATCCAGCTGTGATCAGCGCCA 1078
Query 1081 TAGACGAGGAAACCGAATTCAATGCCTTGGTGGAGGAAGAGGCGGCTCTCCTGGAATCAC 1140
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1079 TAGATGAGGAAACCGAATTCAATGCCTTGGTGGAGGAAGAGGCGGCTCTACTGGAGTCAC 1138
Query 1141 TGCTTGGGGAAAGAATTTGATGTTTTCATAGGGACTACTTAGCTTTCTTTTTGTATTCCA 1200
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1139 TGCTTGGGGAAAGAATTTAATGTCTTCATAGGGACTACTTAGCTTTCTTTCTGTATTCCA 1198
Query 1201 TAATTGCAATGCCATGTAATCTAAATTTTCTCTTAGAAAAACTCATTTTGCCTTTCCAAA 1260
||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 1199 TAATTGCAATGCCTTGTAATTTAAAATTTCTCTTATAAAAACTCATTTTGCCTTTCCAAA 1258
Query 1261 TCTCTCTTGTTGACAATTGGGTTCGATCATTACCGAAACAGAAGTCCCTCCAAATGACCA 1320
||||| | || ||||||| || |||| |||||||||||||||||||||
Sbjct 1259 TCTCT-T-GTGGACAATTA----CG---------GAAATAGAAGTCCCTCCAAATGACCA 1303
Query 1321 TGCACCT--A---CTTGTAAACCGAAGGATTCTT 1349
||||||| | ||| ||||||||||||| |||
Sbjct 1304 TGCACCTTTAGTACTTATAAACCGAAGGATCCTT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5