BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33495.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328389 jgi|Araly1|328389|fgenesh1_pm.C_scaffold_7000616 1796 0.0
> Ahg328389 jgi|Araly1|328389|fgenesh1_pm.C_scaffold_7000616
Length=3213
Score = 1796 bits (972), Expect = 0.0
Identities = 1056/1098 (96%), Gaps = 0/1098 (0%)
Strand=Plus/Plus
Query 152 GATCGAGTTCGTGACCATGGCTACGACAATTACATGGAAGTGGAGaaaaaaaTCCGCAAA 211
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 2116 GATCGAGTTCGTGACCATGGCTACGACAACTACATGGAAGTCGAGAAGAAAATCCGTAAA 2175
Query 212 GTCGTCAAATTTCACAGCTTGATTCTCTCTCAACCCAACCACACAATCGCAATCTCTCTT 271
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2176 GTCATCAAATTTCACAGCTTGATTCTCTCTCAACCCAACAACACAATCGCAATCTCTCTT 2235
Query 272 CTAGACACGCTCGCTCGTCGTCTAGGTCTCGGCTTCAAGCAACACGAACCAGGTGCTTTT 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 CTAGACACGCTCGCTCGTCGTCTAGGTCTCGGCTTCAAGCAACACGAACCAGGTGCTTTC 2295
Query 332 CTCCTCAAGTTCCCACACGTGTTTGAGATATACGAGCACCCAGTTCAAAGAATCCTCTAT 391
|||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 2296 CTCCTCAAATTCCCACACGTATTCGAGATTTACGAGCACCCAGTTCAAAGAATCCTCTAC 2355
Query 392 TGTCGATTAACCCGTAAAGCTTTGGATCAAATCCGTCACGAACACGAAGCTGTTCTCGAC 451
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 2356 TGTCGATTAACCCGTAAAGCTTTGGATCAAATCCGTCACGAGCACGAAGCTGTTCTCGCC 2415
Query 452 CAAATACCCGACGCCGTGACCCGGTTGAGGAAACTCGTTATGATGTCGAATACGGGTCGG 511
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2416 CAAATACCCGACGCCGTGACCCGGTTGCGGAAACTCGTTATGATGTCGAATACGGGTCGG 2475
Query 512 ATCCGTCTTGAACATGTCAGGATTGCTCGGACTGAGTTTGGACTCCCTGAAGATTTCGAG 571
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 ATTCGTCTTGAACATGTCAGGATTGCTCGGACTGAGTTTGGACTCCCTGAAGATTTCGAG 2535
Query 572 TACTCTGTGATTCTGAAACATCCACAGTTCTTTAGACTCATTGATGGTGAAGAGACTCGA 631
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 2536 TACTCTGTGATTCTGAAACATCCTCAGTTCTTTAGGCTCATTGATGCTGAAGAGACTCGA 2595
Query 632 GATAAGTACATTGAGATTGTGGAAAAGGATCCTAATTTATCGATTTGTGCAATAGAGAGA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 GATAAGTACATTGAGATTGTGGAAAAGGATCCTAATTTATCGATTTGTGCAATAGAGAGA 2655
Query 692 GTTAGAGAGATTGAGTATAGAACAAAAGGAATTGATGCAGAGGATGTTCGATTCTCATTC 751
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2656 GTTAGAGAGATTGAGTATAGAACAAAGGGAATTGATGCAGAGGATGTTCGATTCTCATTC 2715
Query 752 GTTGTGAATTTTCCTCCTGGATTTAAGATTGGAAAGTATTTTCGAATTGCTGTTTGGAAA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 GTTGTGAATTTTCCTCCTGGATTTAAGATTGGAAAGTATTTTCGAATTGCTGTTTGGAAA 2775
Query 812 TGGCAGAGGCTTCCTTATTGGTCACCGTATGAGGATATATCGGGTTACGATTTGAGATCG 871
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2776 TGGCAGAGGCTTCCTTATTGGTCACCCTATGAGGATATTTCGGGTTACGATTTGAGATCG 2835
Query 872 ATGGAAGCGCAGAATCGATTAGAGAAGAGATCTGTTGCTTGTATTCATGAATTGCTGTCT 931
|||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 2836 ATGGAAGCCCAGAATAGATTAGAGAAGAGAGCTGTTGCTTGTATCCATGAATTGCTTTCG 2895
Query 932 TTGACTGTGGAGAAGAAGATCACGCTTGAGAGAATTGCTCATTTTAGGAATGTGATGAAT 991
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2896 TTGACTGTGGAGAAGAAGATCACTCTTGAGAGAATTGCTCATTTTAGGAATGTTATGAAT 2955
Query 992 TTGCCTAAGAAATTGAAAGAGTTTCTTTTGCAACATCAGGGGATATTTTACATATCGACT 1051
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2956 TTGCCTAAGAAGTTGAAAGAGTTTCTTCTGCAACATCAAGGGATATTTTACATATCGACT 3015
Query 1052 CGAGGAAATTACGGGAAGCTTCATACGGTGTTTCTTAGAGAGGGGTATAAGAGAGGGGAA 1111
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3016 CGTGGGAATTACGGGAAGCTTCATACGGTGTTTCTTAGAGAGGCGTATAAGAGAGGGGAA 3075
Query 1112 TTGGTAGAACCGAATGATGTTTATTTAGCTAGGAGGAGATTAGCTGAGCTTGTTTTGATG 1171
||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 3076 TTGGTTGAACCAAATGATGTGTATTTAGCTAGGAGGAGATTAGCTGAGCTTGTGTTGATG 3135
Query 1172 AGTCCTAGAAAGGCTAAGGTTGATGCAGAGTTGGTTCGCTACAGAGATGGATTGGATGAT 1231
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3136 AGTCCTAGAAAGGCTAAGGTTGATGCAGAGTTGGTTAGCTACAGAAATGGATTGGATGAT 3195
Query 1232 GAAGATGATGTCGAATGA 1249
||||||||||||||||||
Sbjct 3196 GAAGATGATGTCGAATGA 3213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5