BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33510.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1 2536 0.0
> Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1
Length=1727
Score = 2536 bits (1373), Expect = 0.0
Identities = 1529/1604 (95%), Gaps = 11/1604 (1%)
Strand=Plus/Plus
Query 15 GAACTAGTCGTCAATCGAAATCCCAAAGATCAGCGATGGTGACTCTAAACGCTTCTTCTC 74
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1 GAACTAGTCGTCAATCAAAATCCCAAAG--CA---ATGGTGACTCTAAACGCTTCTTCTC 55
Query 75 CTCTCACGACCAAGTCGTTCCTCCCCTACCGTCACGCTCCTCGCCGTCCAATCTCTTTCT 134
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 56 CTCTCACGACCAAGTCATTCCTCCCCTACCGTCACGCTCCTCGCCGTCCGATCTCTTTCT 115
Query 135 CCCCTGTCTTCGCCGTTCATTCGACTGACCCCAAGAAATCTACCCAATCAGCCTCCGCTT 194
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCCCTGTTTTCGCCGTTCATTCGACTGACCCCAAGAAATCTACCCAATCAGCCTCCGCTT 175
Query 195 CGGTTAAATGGAGTCTAGAGAGTTGGAAGTCGAAGAAAGCTTTGCAATTGCCGGATTATC 254
||| | |||||||| |||| |||||||| |||| |||||||||||||||||||| ||||
Sbjct 176 CGGCTGAATGGAGTATAGACAGTTGGAAATCGATGAAAGCTTTGCAATTGCCGGCGTATC 235
Query 255 CTGATCAGAAGGATGTTGATTCGGTTCTACAGACGCTTTCTTCTTTTCCTCCTATAGTTT 314
|||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 236 CTGACCAGAAGGATCTCGATTCGGTTCTACAGACGCTTTCTTCTTTCCCTCCTATAGTTT 295
Query 315 TCGCTGGTGAGGCTAGGAAACTAGAGGATAAGCTTGGTCAAGCGGCTATGGGTCAAGCCT 374
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 296 TCGCTGGTGAGGCGAGGAAACTAGAGGATAAGCTTGGTCAAGCGGCCATGGGTCAGGCCT 355
Query 375 TTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAATTTAACGCTAATAACATTA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAATTTAACGCTAATAACATTA 415
Query 435 GAGACACCTTTAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTAC 494
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAGATACCTTCAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTAC 475
Query 495 CAGTTATCAAGGTGGGAAGAATGGCTGGTCAGTTTGCGAAGCCGAGATCAGACCCATTTG 554
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 476 CAGTTATCAAGGTGGGAAGAATGGCTGGTCAGTTTGCCAAGCCGAGATCGGACCCATTTG 535
Query 555 AGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAGGAGATAACATAAATGGTGATGCTT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAGGAGATAACATAAATGGTGATGCTT 595
Query 615 TTGATGAGAAATCGAGGATTCCTGATCCTCATAGGATGGTTAGAGCGTACACACAGTCTG 674
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 596 TTGATGAGAAATCCAGGATTCCTGATCCTCATAGGATGGTTAGAGCCTACACACAATCTG 655
Query 675 TGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 TGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAAAGAG 715
Query 735 TTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGGTACCGTGAAT 794
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TTAGCCAGTGGAATCTTGATTTCACCCAACATAGTGAACAGGGTGACAGGTACCGTGAAT 775
Query 795 TGGCTAATAGAGTTGATGAGGCTTTGGGATTCATGGGTGCAGCTGGACTTACTAGTGCTC 854
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |
Sbjct 776 TGGCTAATAGAGTTGATGAGGCTTTAGGATTCATGGGTGCAGCTGGACTTACCAATGCAC 835
Query 855 ACCCGATCATGACTACTACTGAGTTTTGGACATCCCATGAGTGTTTGTTATTGCCTTATG 914
|||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 836 ACCCCATCATGACTACTACTGAGTTTTGGACTTCCCATGAGTGTTTGTTACTGCCTTATG 895
Query 915 AGCAAGCACTCACAAGAGAGGATTCAACATCTGGACTTTACTATGATTGCTCTGCGCACA 974
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 AGCAAGCACTCACAAGAGAGGATTCCACATCTGGACTTTACTATGATTGCTCTGCGCACA 955
Query 975 TGCTTTGGGTTGGAGAACGAACTCGCCAACTTGATGGTGCTCATGTTGAGTTTCTGAGGG 1034
|||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 956 TGCTTTGGGTTGGAGAGCGAACTCGCCAACTCGATGGTGCCCATGTTGAGTTTCTGAGAG 1015
Query 1035 GAATCGCTAACCCCCTCGGAATCAAGGTGAGTGATAAAATGGTCCCTAGTGAACTGGTTA 1094
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAATCGCTAACCCCCTTGGAATCAAGGTGAGTGATAAAATGGTCCCTAGTGAACTGGTTA 1075
Query 1095 AGCTGATAGAGATACTAAACCCTCAGAACAAGCCTGGAAGGATTACGGTTATAGTGAGAA 1154
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1076 GGCTGATAGAGATACTAAACCCTCAGAACAAGCCTGGAAGGATTACAGTTATTGTGAGAA 1135
Query 1155 TGGGAGCTGAGAATATGCGGGTCAAGCTTCCTAATTTGATCAGAGCAGTCCGTGGAGCCG 1214
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1136 TGGGAGCTGAGAATATGCGGGTTAAGCTTCCTAATTTGATCAGAGCAGTACGAGGAGCCG 1195
Query 1215 GTCAGATTGTGACTTGGGTTAGTGATCCAATGCACGGAAACACAATCATGGCTCCTGGTG 1274
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 GTCAGATAGTGACTTGGGTTAGTGATCCAATGCATGGAAACACAATCATGGCTCCTGGTG 1255
Query 1275 GGCTAAAAACTCGTTCTTTCGATGCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTCC 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 GGCTAAAAACTCGTTCTTTCGATGCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTGC 1315
Query 1335 ATGATCAAGAAGGGAGTTTCCCTGGCGGGGTTCATTTAGAAATGACTGGTCAAAACGTGA 1394
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1316 ATGATCAAGAAGGGAGTTTCCCTGGTGGGGTTCATTTAGAAATGACAGGGCAAAACGTGA 1375
Query 1395 CAGAATGTGTCGGAGGGTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACA 1454
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CAGAATGCGTTGGAGGGTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACA 1435
Query 1455 CTCACTGTGACCCAAGACTCAACGCATCTCAGTCTCTGGAGCTTGCATTCATCATTGCAG 1514
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 CTCATTGTGACCCAAGGCTCAACGCCTCTCAGTCTCTGGAGCTTGCATTCATCATTGCAG 1495
Query 1515 AGCGTCTGCGAAAGAGAAGGCTTGGTTCCGGGAATCTTCCGTCATCTATTGGAGTCTAGA 1574
||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1496 AGCGTCTACGAAAGAGAAGGCTTGGTTCGGGGAA------GTCATCTATTGGAGTCTAGA 1549
Query 1575 GAACAAGAAAATACTTATCCGAGCTAGGATGTGTGTGTATAGAG 1618
||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct 1550 GAATAAGAAAATACTTGTCCGAGTTAGGATGTGTGTGTATAGAG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5