BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33510.1 Length=1821 Score E Sequences producing significant alignments: (Bits) Value Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1 2536 0.0 > Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1 Length=1727 Score = 2536 bits (1373), Expect = 0.0 Identities = 1529/1604 (95%), Gaps = 11/1604 (1%) Strand=Plus/Plus Query 15 GAACTAGTCGTCAATCGAAATCCCAAAGATCAGCGATGGTGACTCTAAACGCTTCTTCTC 74 |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 1 GAACTAGTCGTCAATCAAAATCCCAAAG--CA---ATGGTGACTCTAAACGCTTCTTCTC 55 Query 75 CTCTCACGACCAAGTCGTTCCTCCCCTACCGTCACGCTCCTCGCCGTCCAATCTCTTTCT 134 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 56 CTCTCACGACCAAGTCATTCCTCCCCTACCGTCACGCTCCTCGCCGTCCGATCTCTTTCT 115 Query 135 CCCCTGTCTTCGCCGTTCATTCGACTGACCCCAAGAAATCTACCCAATCAGCCTCCGCTT 194 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 CCCCTGTTTTCGCCGTTCATTCGACTGACCCCAAGAAATCTACCCAATCAGCCTCCGCTT 175 Query 195 CGGTTAAATGGAGTCTAGAGAGTTGGAAGTCGAAGAAAGCTTTGCAATTGCCGGATTATC 254 ||| | |||||||| |||| |||||||| |||| |||||||||||||||||||| |||| Sbjct 176 CGGCTGAATGGAGTATAGACAGTTGGAAATCGATGAAAGCTTTGCAATTGCCGGCGTATC 235 Query 255 CTGATCAGAAGGATGTTGATTCGGTTCTACAGACGCTTTCTTCTTTTCCTCCTATAGTTT 314 |||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 236 CTGACCAGAAGGATCTCGATTCGGTTCTACAGACGCTTTCTTCTTTCCCTCCTATAGTTT 295 Query 315 TCGCTGGTGAGGCTAGGAAACTAGAGGATAAGCTTGGTCAAGCGGCTATGGGTCAAGCCT 374 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 296 TCGCTGGTGAGGCGAGGAAACTAGAGGATAAGCTTGGTCAAGCGGCCATGGGTCAGGCCT 355 Query 375 TTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAATTTAACGCTAATAACATTA 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAATTTAACGCTAATAACATTA 415 Query 435 GAGACACCTTTAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTAC 494 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GAGATACCTTCAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTAC 475 Query 495 CAGTTATCAAGGTGGGAAGAATGGCTGGTCAGTTTGCGAAGCCGAGATCAGACCCATTTG 554 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 476 CAGTTATCAAGGTGGGAAGAATGGCTGGTCAGTTTGCCAAGCCGAGATCGGACCCATTTG 535 Query 555 AGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAGGAGATAACATAAATGGTGATGCTT 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AGGAGAAAGATGGTGTGAAGCTGCCGAGTTACAGAGGAGATAACATAAATGGTGATGCTT 595 Query 615 TTGATGAGAAATCGAGGATTCCTGATCCTCATAGGATGGTTAGAGCGTACACACAGTCTG 674 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 596 TTGATGAGAAATCCAGGATTCCTGATCCTCATAGGATGGTTAGAGCCTACACACAATCTG 655 Query 675 TGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAGAGAG 734 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 656 TGGCTACGTTGAATCTCTTGAGAGCATTTGCTACTGGAGGTTATGCAGCTATGCAAAGAG 715 Query 735 TTAGCCAGTGGAACCTTGATTTCACGCAACATAGTGAACAGGGTGACAGGTACCGTGAAT 794 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 716 TTAGCCAGTGGAATCTTGATTTCACCCAACATAGTGAACAGGGTGACAGGTACCGTGAAT 775 Query 795 TGGCTAATAGAGTTGATGAGGCTTTGGGATTCATGGGTGCAGCTGGACTTACTAGTGCTC 854 ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| | Sbjct 776 TGGCTAATAGAGTTGATGAGGCTTTAGGATTCATGGGTGCAGCTGGACTTACCAATGCAC 835 Query 855 ACCCGATCATGACTACTACTGAGTTTTGGACATCCCATGAGTGTTTGTTATTGCCTTATG 914 |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 836 ACCCCATCATGACTACTACTGAGTTTTGGACTTCCCATGAGTGTTTGTTACTGCCTTATG 895 Query 915 AGCAAGCACTCACAAGAGAGGATTCAACATCTGGACTTTACTATGATTGCTCTGCGCACA 974 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 896 AGCAAGCACTCACAAGAGAGGATTCCACATCTGGACTTTACTATGATTGCTCTGCGCACA 955 Query 975 TGCTTTGGGTTGGAGAACGAACTCGCCAACTTGATGGTGCTCATGTTGAGTTTCTGAGGG 1034 |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct 956 TGCTTTGGGTTGGAGAGCGAACTCGCCAACTCGATGGTGCCCATGTTGAGTTTCTGAGAG 1015 Query 1035 GAATCGCTAACCCCCTCGGAATCAAGGTGAGTGATAAAATGGTCCCTAGTGAACTGGTTA 1094 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 GAATCGCTAACCCCCTTGGAATCAAGGTGAGTGATAAAATGGTCCCTAGTGAACTGGTTA 1075 Query 1095 AGCTGATAGAGATACTAAACCCTCAGAACAAGCCTGGAAGGATTACGGTTATAGTGAGAA 1154 ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1076 GGCTGATAGAGATACTAAACCCTCAGAACAAGCCTGGAAGGATTACAGTTATTGTGAGAA 1135 Query 1155 TGGGAGCTGAGAATATGCGGGTCAAGCTTCCTAATTTGATCAGAGCAGTCCGTGGAGCCG 1214 |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 1136 TGGGAGCTGAGAATATGCGGGTTAAGCTTCCTAATTTGATCAGAGCAGTACGAGGAGCCG 1195 Query 1215 GTCAGATTGTGACTTGGGTTAGTGATCCAATGCACGGAAACACAATCATGGCTCCTGGTG 1274 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1196 GTCAGATAGTGACTTGGGTTAGTGATCCAATGCATGGAAACACAATCATGGCTCCTGGTG 1255 Query 1275 GGCTAAAAACTCGTTCTTTCGATGCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTCC 1334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1256 GGCTAAAAACTCGTTCTTTCGATGCAATCAGGGCGGAATTGAGAGCGTTCTTCGACGTGC 1315 Query 1335 ATGATCAAGAAGGGAGTTTCCCTGGCGGGGTTCATTTAGAAATGACTGGTCAAAACGTGA 1394 ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct 1316 ATGATCAAGAAGGGAGTTTCCCTGGTGGGGTTCATTTAGAAATGACAGGGCAAAACGTGA 1375 Query 1395 CAGAATGTGTCGGAGGGTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACA 1454 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 CAGAATGCGTTGGAGGGTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACA 1435 Query 1455 CTCACTGTGACCCAAGACTCAACGCATCTCAGTCTCTGGAGCTTGCATTCATCATTGCAG 1514 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1436 CTCATTGTGACCCAAGGCTCAACGCCTCTCAGTCTCTGGAGCTTGCATTCATCATTGCAG 1495 Query 1515 AGCGTCTGCGAAAGAGAAGGCTTGGTTCCGGGAATCTTCCGTCATCTATTGGAGTCTAGA 1574 ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1496 AGCGTCTACGAAAGAGAAGGCTTGGTTCGGGGAA------GTCATCTATTGGAGTCTAGA 1549 Query 1575 GAACAAGAAAATACTTATCCGAGCTAGGATGTGTGTGTATAGAG 1618 ||| |||||||||||| |||||| |||||||||||||||||||| Sbjct 1550 GAATAAGAAAATACTTGTCCGAGTTAGGATGTGTGTGTATAGAG 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68371989775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5