BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33540.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491332 jgi|Araly1|491332|fgenesh2_kg.7__765__AT4G33540.1 1810 0.0
> Ahg491332 jgi|Araly1|491332|fgenesh2_kg.7__765__AT4G33540.1
Length=1215
Score = 1810 bits (980), Expect = 0.0
Identities = 1141/1217 (94%), Gaps = 18/1217 (1%)
Strand=Plus/Plus
Query 33 AGAGACGAGGATCAATCACCATTCTCATGGCTTCAGCTTCTTTCTCTGCGGTTTCTTCGC 92
||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1 AGAGACGAGAATCAATCACCAGTCTCATGGCTTCAGCTTCTTTCCCTGCGATTTCTTCGC 60
Query 93 TCTCGTATCAATTCCGTTCAAAAGAAGCGATCTTTTCATCGAAAGCTTCCTGTTTTAGCT 152
|||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 61 TCTCGTATCACTTCCGTTCAAAAGAAGCCATCTTTTCATCGAAAGCTTCCTCTTTTAGTT 120
Query 153 CGACGGCTTTATCAGGAAGGAGAGT-GTT--TGGATCTATCAAAGCAGCTCAAGTGACAA 209
||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||
Sbjct 121 CGACGGCTTTATCAGGAAGGAGAGTATTTGGTGGATCTGTCAAAGCAGCTCATGTGACAA 180
Query 210 GCCATGAGAATCCTAGAAGACGAACTCAGAACGTCGAAGGAGATATATTTGTTGACAATA 269
||||| |||| ||| || |||| ||||||||||||||||||||||||| || |||||||
Sbjct 181 GCCATCAGAACCCTCGACGACGCTCTCAGAACGTCGAAGGAGATATATTCGTCGACAATA 240
Query 270 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGGATTTATTCACTCGAGTGGACA 329
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 241 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGAAATTATTCACTCGAGTGGACA 300
Query 330 ACATGTCTGCGGTTAC-AAAGCAACCAACTTGTAAGGAGGAAAGACTGAATGCTCTTCAG 388
||||||| |||||||| ||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 301 ACATGTCCGCGGTTACTAAA-CAACCAGCCTGTAAGGAGGAAAGACTGAATGCTCTTCAG 359
Query 389 GCCTTACTATCTTGTCCGACGGGCTCTATTCGCACTCAAACTCCACCTGCTGACATAGGG 448
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GCCTTACTATCATGTCCGACGGGCTCTATTCGCACTGAAACTCCACCTGCTGACATAGGG 419
Query 449 GAAGCTCAAGAGACCTTTCCACTTGTAGTGGACAAAGACACACTTCCTGGCGTTTTTCAT 508
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 420 GAAGCTCAAGAGACCTTTCCACTTGCAGTGGACAAAGACACACTTCCTGGTGTTTTTCAT 479
Query 509 TGTGGATTTCATTCCAAGAAATCGTATGGAGCAACTTCTTACCTGATCCTTCATCGTGAG 568
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 480 TGTGGATTTCATTCCAAGAAATCCTACGGAGCAACTTCCTACCTGATCCTTCATCGTGAG 539
Query 569 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTGGAAAGATCGAGATG 628
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 540 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTCGAAAGATTGAGATG 599
Query 629 AAGGGTGGTGTTCGCTACATGTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 688
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGGTGGTGTTCGCTACATCTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 659
Query 689 TGGGCAGA-CAGATTCAAGTCTACCAGAATTCTGCATTCTGATGATGTTGAACCTTCGAC 747
|||||||| | ||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 660 TGGGCAGATC-GATTCAAGTCTACTAGAATTCTGCATTTTGAAGATGTTGAACCTTCGAC 718
Query 748 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 778
Query 808 ACTTATACACACTCCTGGTCATTCAGAAGGATCAGTGTGCATGTTCCATAAGTCCCTCAA 867
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 779 GCTTATACACACTCCCGGTCATTCAGAAGGATCAGTGTGCCTGTTCCATAAGTCTCTCAA 838
Query 868 GGCATTATTCACTGGCGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 927
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGCATTATTCACTGGAGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 898
Query 928 GTACAATCACGGTTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 987
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTATAATCACGGGTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 958
Query 988 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGACGAGAA 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 959 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGAAGAGAA 1018
Query 1048 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTCCTTTAG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTACTTTAG 1078
Query 1108 CAAATCCGGGAAAGCTTAAGAT-A-----T--GTATGCTGATTCTAAACCGGTTAATCAA 1159
||||||||||||||||||||| | | |||||||||||||| |||||| || |||
Sbjct 1079 CAAATCCGGGAAAGCTTAAGAAGACAAACTTTGTATGCTGATTCTAGACCGGTGAACCAA 1138
Query 1160 ACTAAACCA---GACCGAATGTCTCTACGGCCTGACTGGTCTATGTGTCAGTTAGTTCCC 1216
||||||||| ||| |||||||||| ||| |||||| || | |||||||||||||||||
Sbjct 1139 ACTAAACCACCAGACTGAATGTCTCTTCGGTCTGACTTGTTTGTGTGTCAGTTAGTTCCC 1198
Query 1217 ACGCGAGTGATGTATTT 1233
||| |||||||||||||
Sbjct 1199 ACGTGAGTGATGTATTT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5