BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33550.1

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491330 jgi|Araly1|491330|fgenesh2_kg.7__763__AT4G33550.2          549    8e-156


> Ahg491330 jgi|Araly1|491330|fgenesh2_kg.7__763__AT4G33550.2
Length=499

 Score =  549 bits (297),  Expect = 8e-156
 Identities = 317/327 (97%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  99   ATGGGAAGTGGCATGATAAGGACATTGGTTATTCTAGCAATAGCTTTATTCATGATCGGT  158
            ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  73   ATGGGAAATGGCATGATAAGGACATTGGTTATTCTAGCACTAGCTTTATTCATGATCGGT  132

Query  159  TCCGACAACGTCCACGTGGCAAAAGCCCAGGTCTGTGGAGCTAACTTGTCGGGACTGATG  218
            |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  133  TCCGACAATGTCCACGTGGCAACAGCTCAGGTCTGTGGAGCTAACTTGTCGGGACTGATG  192

Query  219  AACGAATGTCAACGCTACGTCAGCAACGCCGGACCAAATTCTCAGCCGCCGTCTCGGTCT  278
            || ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct  193  AATGAATGTCAACGCTACGTCAGCAACGCCGGACCAAACTCTCCGCCACCGTCTCGGTCT  252

Query  279  TGTTGTGCTCTAATCCGTCCCATTGACGTACCTTGTGCTTGCCGCTACGTTTCAAGGGAT  338
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  253  TGTTGTGCTCTAATCCGTCCCATCGACGTACCTTGTGCTTGCCGCTACGTTTCAAGGGAT  312

Query  339  GTTACGAACTATATTGATATGGACAAAGTGGTTTACGTTGCTCGTTCTTGCGGCAAGAAG  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  GTTACGAACTATATTGATATGGACAAAGTGGTTTACGTTGCTCGTTCTTGCGGCAAGAAG  372

Query  399  ATTCCCTCCGGTTATAAATGTGGAAGT  425
            |||||||||||||||||||||||||||
Sbjct  373  ATTCCCTCCGGTTATAAATGTGGAAGT  399


 Score =  178 bits (96),  Expect = 4e-44
 Identities = 100/102 (98%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  503  GTTACACCATTCCGGCGGCTTAAAAAGGAACGAAACCAACAGAATTTGGATTTGCTATAA  562
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  398  GTTACACCATTCCGGCGGCTTAAAAAGGAAGGAGACCAACAGAATTTGGATTTGCTATAA  457

Query  563  AAATTAATAAAACGTATTAGTATCTGAATAATGATGATGATG  604
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  458  AAATTAATAAAACGTATTAGTATCTGAATAATGATGATGATG  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22568766864


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5