BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33560.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491329 jgi|Araly1|491329|fgenesh2_kg.7__762__AT4G33560.1          499    7e-141


> Ahg491329 jgi|Araly1|491329|fgenesh2_kg.7__762__AT4G33560.1
Length=409

 Score =  499 bits (270),  Expect = 7e-141
 Identities = 357/397 (90%), Gaps = 14/397 (4%)
 Strand=Plus/Plus

Query  1    ACATTGTCCAAAGATCAATACACACTGTTTTAAGAAGAATTTGaaaagaaaaagaaaaaa  60
            |||||||||||||||||||||||||||||||||| |||| ||    || ||||| |||||
Sbjct  1    ACATTGTCCAAAGATCAATACACACTGTTTTAAG-AGAA-TT----AG-AAAAG-AAAAA  52

Query  61   aGAAGATGAATGCCGGAAAGCAAGCTTCGTGGGCGGTGGCGACGGCGATCGCAGCCGTGG  120
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  53   AGAAGATGAACGCCGGAAAGCAAGCTTCGTGGGCGGTGGCGACGGCGATTGCAGCCGTGG  112

Query  121  AAGTGCTAAAAGACCAAGGCGTTGCTCGGTGGAACTACCTTTTCCGCTTACTCCACAAAG  180
            |||| ||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct  113  AAGTACTAAAGGACCAAGGCGTTGCTCGATGGAACTACCCTCTCCGCTTACTCCACAAAG  172

Query  181  AAGCAATGGCTCGCGTCCGTACCATTACAGTCCCATCTCGTCCCTCTCCTCCTACGTCTT  240
            ||||||||||||| ||||||||||| ||||||||||||| || |||||||| ||||||||
Sbjct  173  AAGCAATGGCTCGTGTCCGTACCATCACAGTCCCATCTCCTCACTCTCCTCGTACGTCTT  232

Query  241  CATCTTCG-GCTACTTCCATCAGATCCAAACCTTTGTCCACCACACCCTTTGAGACATCC  299
            ||  ||||  | | || |||||||||||||||  || | || ||||||||||||| ||| 
Sbjct  233  CAGATTCGACCGA-TTTCATCAGATCCAAACCCATGACGACTACACCCTTTGAGAAATCT  291

Query  300  TTTGAGAAAGCTATGGGTCTTAGCTGCTTTGGTCCCACCACCGTTAGATTCTAGATCTCT  359
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  TTTCAGAAAGCTATGGGTCTTAGCTGCTTTGGTCCCACCACCGTTAGATTCTAGATCTCT  351

Query  360  ATGTACTGTGTTGTATGTACGCAAATCAGAATGTGCA  396
            ||||||| ||||| |   |||||||||||||||||||
Sbjct  352  ATGTACTCTGTTG-A---ACGCAAATCAGAATGTGCA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5