BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33565.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328381 jgi|Araly1|328381|fgenesh1_pm.C_scaffold_7000608 1315 0.0
> Ahg328381 jgi|Araly1|328381|fgenesh1_pm.C_scaffold_7000608
Length=948
Score = 1315 bits (712), Expect = 0.0
Identities = 875/953 (92%), Gaps = 13/953 (1%)
Strand=Plus/Plus
Query 232 ATGAGGTTCCTTCACAGATTTCTGTTGGAGGATATGCCCAAAGAAACCTTTTCGGACTCT 291
||||| ||||||||||||||||||||||||||| || |||| |||||||| ||||||||
Sbjct 1 ATGAGATTCCTTCACAGATTTCTGTTGGAGGATGTGTCCAACGAAACCTTATCGGACTCG 60
Query 292 CTCTGTAAAAATAATTGCATCCAAGAGTTGAAAACTCTAGGATACTGTTCATCCTATTGT 351
|||||||| ||||||| ||||||||||||||| | |||||| ||| |||||||||||
Sbjct 61 ATCTGTAAATTTAATTGCCTCCAAGAGTTGAAAAGTAAAGGATATTGTCCATCCTATTGT 120
Query 352 CTTGACGAGTGTCCTTCCATCTGCGAGATCGTCGTAATTTCAGGTCTTT-CACCACCTGC 410
|||||||||||||| || |||||||||||||||||| || ||||| ||| | |||||| |
Sbjct 121 CTTGACGAGTGTCCATCAATCTGCGAGATCGTCGTAGTTACAGGT-TTTACTCCACCTCC 179
Query 411 AGAGATCCACCACGACGATAACTTAAAGAGGATCTTGATCATCTCTGCTTCATCTATCAT 470
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTGATCCACCACGACGACAACTTAAAGAGGATCTTGATCATCTCTGCTTCATCTATCAT 239
Query 471 CACAACTCTGTTTCTCCTTACTTTACTTGTTCTCTGCTTCAAGTTTTACTATAGGAGGAG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACAACTCTGTTTCTCCTTACTTTACTTGTTCTCTGCTTCAAGTTTTACTATAGGAGGAG 299
Query 531 AAGATCA-A-TAA-CAACATCAAGAAGATGGAGTATGGAAGAAGCTAGGAATTGGGATTT 587
||||| | | | | ||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 300 AAGATTAGAATTAGCAATATCAAGAAGATGGAGCATGGAAGAAGCTAGGAATTGGGACTT 359
Query 588 TGATGGACCAGCACCTGTTATTGTTGATCATCCGATTTGGCATATCAGAACCATAGGGTT 647
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 360 GGATGGACCAGCACCGGTTATCGTCGATCATCCGATTTGGCATATCAGAACCATAGGATT 419
Query 648 GAATCCAACGGTTATAAGTTCCATCAAAGTTTGTCAGTATAGTAAAAAAGATGGTGTTGT 707
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GAATCCAACGGTTATAAGTTCGATCAAAGTTTGCCAGTATAGTAAAAAAGATGGTGTTGT 479
Query 708 GGAAGGAACTGATTGCTCCGTTTGTTTAAGCGAATTCGAAGAAGAAGAGACGCTTAGATT 767
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAAGGAACTGATTGTTCGGTTTGTTTAAGCGAATTCGAAGAAGAAGAGACGCTTAGATT 539
Query 768 GTTACCAAAGTGTAAACATGCTTTTCATCTTTATTGTATTGATACTTGGCTTAGATCACA 827
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GTTACCAAAGTGTAAACACGCTTTTCATCTTTCTTGTATTGATACTTGGCTTAGATCACA 599
Query 828 CACCAATTGTCCGCTTTGTCGTGCTCCTATCGTTGAGGCCAACACAATGATTGATGATCA 887
|||||||||||||||||||||||||||||| || | ||||||||| ||||||||||| ||
Sbjct 600 CACCAATTGTCCGCTTTGTCGTGCTCCTATAGTCGTGGCCAACACGATGATTGATGACCA 659
Query 888 TAGTGAGGGGCTAGAGGAGATAAGTGTGA-TGATTCCAGAAGAAA---ATGGAGATGATA 943
||||||||| ||||| ||||| |||||| | ||||||||||||| |||||||| |||
Sbjct 660 TAGTGAGGGTCTAGATGAGATCCGTGTGAGT-ATTCCAGAAGAAATCGATGGAGATAATA 718
Query 944 CCGATGAAGAAATCGAGGAAGAAAGAGATGGCTTTGTTAGTAATATTAGTAGAGATCATG 1003
|||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||
Sbjct 719 TCGATGAAGAAATCGAGGAAGAAAGAGATGGGTTTGCTAGTAATATTAGTAGGGAACATG 778
Query 1004 GTGAGTCACAACAACAGCGAGTGAGACGATCAGTGTCGTTGGATTCGTTATCGGGTTTAA 1063
||||||| || || |||||||||||||||||||||||||| |||| ||| || ||||
Sbjct 779 GTGAGTCGCAGCA---GCGAGTGAGACGATCAGTGTCGTTGGGCTCGTCATCAGGATTAA 835
Query 1064 GGGTAAGTGAAGTTGTTGTGGGTAGAGAAAAGGAGAAGTTGAAGAGAGGCAATAATATTG 1123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 GGGCAAGTGAAGTTGTTGTGGGTAGAGAAAAGGAGAAGTTGAAGAGAGGCAATAACATTG 895
Query 1124 GATCTGGGAGGTCAAGTTTATTGAAGAGATCTATCTCTTACAGTGGAAAGTAG 1176
|||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 GATCTGGGTGGTCAAGTTTCTTGAAGAGATCTATCTCTTACAGTGGAAAGTAG 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5