BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33580.2
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944570 jgi|Araly1|944570|scaffold_700799.1 1535 0.0
Ahg948431 jgi|Araly1|948431|scaffold_800318.1 442 3e-123
Ahg932737 jgi|Araly1|932737|scaffold_400725.1 438 4e-122
Ahg923187 jgi|Araly1|923187|scaffold_104468.1 438 4e-122
Ahg936902 jgi|Araly1|936902|scaffold_501093.1 431 7e-120
Ahg925718 jgi|Araly1|925718|scaffold_201279.1 431 7e-120
Ahg931164 jgi|Araly1|931164|scaffold_303621.1 287 2e-76
> Ahg944570 jgi|Araly1|944570|scaffold_700799.1
Length=957
Score = 1535 bits (831), Expect = 0.0
Identities = 916/957 (96%), Gaps = 5/957 (1%)
Strand=Plus/Plus
Query 170 CTTTACTCTCTAGACCTTTTTCATGGCAGCCACTCCCACACACTTCTCTGTCTCCCATGA 229
|||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1 CTTTACTCTCTAGAGCTCTTTCATGGCAGCTACTCCCACTCACTTCTCTGTCTCCCATGA 60
Query 230 TCCTTTTTCTTCCACGTCTCTCCTTAATCTCCAAACTCAAGCGATCTTTGGTCCCAATCA 289
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 61 TCCTTCTTCTTCCACGTCTCTCCTTAATCTGCAAACCCAAGCGATCTTTGGTCCCAAGCA 120
Query 290 CAGTTTAAA-GACAACCCAGTTGAGAATTCCAGCTTCTTTCAGAAGAAAAGCTACAAACT 348
|| |||||| || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 121 CAATTTAAAGGA-AACCCAGTTGAGAATTCCAGCTTCTTTCAGAAGAAAAGATTTAAACT 179
Query 349 TGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTAATGGGGTTGCAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTAATGGGGTTGCAA 239
Query 409 TTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGTTCCTGGCCTTCA 468
|| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGTTCCTCGCCTTCA 299
Query 469 AGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGGCAGATGCTCAAG 528
|||||| ||||||||| |||| ||||||| |||||||||||| |||||||||||||||
Sbjct 300 AGAAGCATAAGTACAT---GGATAACTTTGATCACTACAAAAATTTGGCAGATGCTCAAG 356
Query 529 CTCCAAAGTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCTTCTGCTGTCCTGG 588
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 CTCCAAAGTTTCTGGTGATTGCTTGTGCAGACTCTAGGGTTTGTCCTTCTGCTGTCCTGG 416
Query 589 GATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTCCATATG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 417 GATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTTCATTTG 476
Query 649 AGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTAATGTGG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTAATGTGG 536
Query 709 AAAACATCTTAGTCATTGGTCATAGCCGGTGTGGAGGAATTCAAGCTTTAATGAAAATGG 768
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 AAAACATCTTAGTCATTGGTCATAGCCGCTGTGGAGGAATTCAAGCTTTAATGAAAATGG 596
Query 769 AAGACGAAGGAGATTCCAGAAGTTTCATACACAACTGGGTAGTTGTGGGAAAGAAGGCAA 828
||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 597 AAGACGAAGTAGACTCCAGAAGTTTCATACAAAACTGGGTAGTTGTGGGGAAGAAGGCAA 656
Query 829 AGGAAAGCACAAAAGCTGTTGCTTCAAACCTCCATTTTGATCATCAGTGCCAACATTGTG 888
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 AGGAAAGCACAAAAGCTGTTGCTTCAAACCTCCATTTTGATAATCAGTGCCAACATTGTG 716
Query 889 AAAAGGCATCGATAAATCATTCATTAGAAAGGCTGCTTGGGTACCCGTGGATAGAAGAGA 948
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 AAAAGGCGTCTATAAATCATTCATTAGAAAGGCTGCTTGGTTACCCGTGGATAGAAGAGA 776
Query 949 AAGTGCGGCAAGGTTCACTGTCTCTCCATGGTGGATACTATAATTTTGTTGATTGTACGT 1008
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 777 AAGTGCGGCAAGGGTCACTGTCTCTCCATGGTGGGTACTATAATTTTGTTGATTGTACAT 836
Query 1009 TCGAGAAATGGACAGTGGATTATGCAGCAAGCAGAGGTAAGAAGAAGGAAGGCAGTGGAA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCGAGAAATGGACAGTGGATTATGCAGCAAGCAGAGGTAAGAAGAAGGAAGGCAGTGGAA 896
Query 1069 TCGCTGTTAAAGACCGGTCAGTTTGGTCTTGACTTACGACTATCTCAATCTTCATAG 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCGCTGTTAAAGACCGGTCAGTTTGGTCTTGACTTACGACTATCTCAATCTTCATAG 953
> Ahg948431 jgi|Araly1|948431|scaffold_800318.1
Length=409
Score = 442 bits (239), Expect = 3e-123
Identities = 339/382 (89%), Gaps = 27/382 (7%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
Query 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
Query 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
|||||| ||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 166 CAGATGTTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
Query 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
Query 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
Query 685 TCTCTGTGAATACTCTTAATGT 706
||||||||||||||||||||||
Sbjct 346 TCTCTGTGAATACTCTTAATGT 367
> Ahg932737 jgi|Araly1|932737|scaffold_400725.1
Length=763
Score = 438 bits (237), Expect = 4e-122
Identities = 337/380 (89%), Gaps = 27/380 (7%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
Query 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
Query 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
|||||| ||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 166 CAGATGTTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
Query 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
Query 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
Query 685 TCTCTGTGAATACTCTTAAT 704
||||||||||||||||||||
Sbjct 346 TCTCTGTGAATACTCTTAAT 365
> Ahg923187 jgi|Araly1|923187|scaffold_104468.1
Length=628
Score = 438 bits (237), Expect = 4e-122
Identities = 337/380 (89%), Gaps = 27/380 (7%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
Query 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
Query 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
| |||||||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 166 CGGATGCTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
Query 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
Query 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
Query 685 TCTCTGTGAATACTCTTAAT 704
||||||||||||||||||||
Sbjct 346 TCTCTGTGAATACTCTTAAT 365
> Ahg936902 jgi|Araly1|936902|scaffold_501093.1
Length=652
Score = 431 bits (233), Expect = 7e-120
Identities = 331/374 (89%), Gaps = 23/374 (6%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
Query 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
|||| ||||||||||||| | | | | | | ||||| | || | || || |
Sbjct 121 TCCTCGCCTTCAAGAAGC---A-T--A--A--G-T-ACTTT-TATGCT-C-AAGCTC-CG 164
Query 517 CAGATGCTCAAGCTCCAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCT 575
|| || | ||| ||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 165 AAG-TG-T-AAG---CAACAGTTTCTGGTGATCGCTTGTGCAGACTCTAGGGTTTGTCCT 218
Query 576 TCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTA 635
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 219 TCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACATTGCAAATTTA 278
Query 636 GTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 695
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 338
Query 696 ACTCTTAATGTGGA 709
||||||||||||||
Sbjct 339 ACTCTTAATGTGGA 352
> Ahg925718 jgi|Araly1|925718|scaffold_201279.1
Length=652
Score = 431 bits (233), Expect = 7e-120
Identities = 331/374 (89%), Gaps = 23/374 (6%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
Query 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
|||| ||||||||||||| | | | | | | ||||| | || | || || |
Sbjct 121 TCCTCGCCTTCAAGAAGC---A-T--A--A--G-T-ACTTT-TATGCT-C-AAGCTC-CG 164
Query 517 CAGATGCTCAAGCTCCAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCT 575
|| || | ||| ||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 165 AAG-TG-T-AAG---CAACAGTTTCTGGTGATCGCTTGTGCAGACTCTAGGGTTTGTCCT 218
Query 576 TCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTA 635
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 219 TCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACATTGCAAATTTA 278
Query 636 GTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 695
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 338
Query 696 ACTCTTAATGTGGA 709
||||||||||||||
Sbjct 339 ACTCTTAATGTGGA 352
> Ahg931164 jgi|Araly1|931164|scaffold_303621.1
Length=742
Score = 287 bits (155), Expect = 2e-76
Identities = 205/227 (90%), Gaps = 12/227 (5%)
Strand=Plus/Plus
Query 488 GGATGACTTTGAACACTACAAAAATCTGGCAGATGCTCAAGCT-C----------CAA-A 535
|||| |||| ||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 116 GGATAACTTAGAACACTACAAAAATTTGGCAGATGCTCAAGCTCCGAAGTGTAAGCAACA 175
Query 536 GTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCTTCTGCTGTCCTGGGATTCCA 595
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 176 GTTTCTGGTGATCGCTTGTGCAGACTCTAGGGTTTGTCCTTCTACTGTCCTGGGATTCCA 235
Query 596 ACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTCCATATGAGTCTGG 655
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 236 ACCGGGTGATGCATTCACTGTTCGCAACATTGCAAATTTAGTACCTTCATATGAGTCGGG 295
Query 656 ACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTA 702
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTA 342
Score = 187 bits (101), Expect = 2e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
Query 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAG 452
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5