BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33585.1

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944569 jgi|Araly1|944569|scaffold_700798.1                        645    0.0  


> Ahg944569 jgi|Araly1|944569|scaffold_700798.1
Length=466

 Score =  645 bits (349),  Expect = 0.0
 Identities = 430/469 (92%), Gaps = 6/469 (1%)
 Strand=Plus/Plus

Query  33   AGAGCTCTTTTATTAAACACTATGGCCTCATCTAAAATGTTCTTAGTCGCTTCTCTCCTC  92
            |||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct  1    AGAGCTCTTTTATT-AACACTATGGCTTCATCTAAAATCTTCTTCGTCGCTTCTCTCCTC  59

Query  93   ATGGCTCTGATGTTCTCCTCTATGATCACTTCAAGCCGCGCTGCACAACAATTTACGAAG  152
            || |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct  60   ATAGCTCTGATGTTCCCCTCCATGATCACTTCAAGCCGCGCCGCACAACAATTTACGGAG  119

Query  153  AAACAAACGTTAAAACCGAAGTATTTTAGACCGCGTTTCCCTCAATTTCCGAGACCCGGC  212
            |||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||
Sbjct  120  AAACAAACGTTAAAACCGAAATTTTTTAGACCCCGTTTCCCTCAATTTCCTAGACCCGGC  179

Query  213  TTTCCGAA-CAATCCAGCATTACCCAGTTTTCCTCAGTTCCCAAGACCCGGTTTTCCAAC  271
            ||||| || ||||||| || ||||||||||||||||||| ||||||||| ||||||||||
Sbjct  180  TTTCC-AAGCAATCCAACAGTACCCAGTTTTCCTCAGTTTCCAAGACCCAGTTTTCCAAC  238

Query  272  TAATCCCATGCCTTTCCCTCAATTCCCTAGACCCGGTTTTCCGAGCAATCCTACACCCGA  331
            |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| 
Sbjct  239  TAATCCTATGCCGTTCCCTCAATTTCCGAGACCCGGTTTTCCGAGCAATCCTACACCCG-  297

Query  332  GTTT-CCTCAGTTTCCGGGGCAAAGTTTTCCAAAATTCCCATTCTCATCTCCTTTCTCTC  390
            |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  298  GTTTTCCTCAGTTTCCGGGGCAAGGTTTTCCAAAATTCCCATTCCCATCTCCTTTCCCTC  357

Query  391  AATATCCGAAGCCCGCAATGCCTGGATCGCCCGTTACGGCCCTCTCTGCTCCCCC-TCTC  449
            ||| |||||| ||||||| |||||||||||||| | || |||||||| ||||||| ||||
Sbjct  358  AATTTCCGAAACCCGCAACGCCTGGATCGCCCGCTCCGCCCCTCTCTACTCCCCCCTCTC  417

Query  450  TCCCTGGAACTCCAACTTCCATCCCTTAAGTTGTCTCCTCCAAACTTAA  498
            |||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct  418  TCCCTGCAACTCCGACTTCCATCCCTTGAGTTGTCTCCTCCAAACTTAA  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28630310667


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5