BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33585.1 Length=776 Score E Sequences producing significant alignments: (Bits) Value Ahg944569 jgi|Araly1|944569|scaffold_700798.1 645 0.0 > Ahg944569 jgi|Araly1|944569|scaffold_700798.1 Length=466 Score = 645 bits (349), Expect = 0.0 Identities = 430/469 (92%), Gaps = 6/469 (1%) Strand=Plus/Plus Query 33 AGAGCTCTTTTATTAAACACTATGGCCTCATCTAAAATGTTCTTAGTCGCTTCTCTCCTC 92 |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 1 AGAGCTCTTTTATT-AACACTATGGCTTCATCTAAAATCTTCTTCGTCGCTTCTCTCCTC 59 Query 93 ATGGCTCTGATGTTCTCCTCTATGATCACTTCAAGCCGCGCTGCACAACAATTTACGAAG 152 || |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| || Sbjct 60 ATAGCTCTGATGTTCCCCTCCATGATCACTTCAAGCCGCGCCGCACAACAATTTACGGAG 119 Query 153 AAACAAACGTTAAAACCGAAGTATTTTAGACCGCGTTTCCCTCAATTTCCGAGACCCGGC 212 |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| Sbjct 120 AAACAAACGTTAAAACCGAAATTTTTTAGACCCCGTTTCCCTCAATTTCCTAGACCCGGC 179 Query 213 TTTCCGAA-CAATCCAGCATTACCCAGTTTTCCTCAGTTCCCAAGACCCGGTTTTCCAAC 271 ||||| || ||||||| || ||||||||||||||||||| ||||||||| |||||||||| Sbjct 180 TTTCC-AAGCAATCCAACAGTACCCAGTTTTCCTCAGTTTCCAAGACCCAGTTTTCCAAC 238 Query 272 TAATCCCATGCCTTTCCCTCAATTCCCTAGACCCGGTTTTCCGAGCAATCCTACACCCGA 331 |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 239 TAATCCTATGCCGTTCCCTCAATTTCCGAGACCCGGTTTTCCGAGCAATCCTACACCCG- 297 Query 332 GTTT-CCTCAGTTTCCGGGGCAAAGTTTTCCAAAATTCCCATTCTCATCTCCTTTCTCTC 390 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 298 GTTTTCCTCAGTTTCCGGGGCAAGGTTTTCCAAAATTCCCATTCCCATCTCCTTTCCCTC 357 Query 391 AATATCCGAAGCCCGCAATGCCTGGATCGCCCGTTACGGCCCTCTCTGCTCCCCC-TCTC 449 ||| |||||| ||||||| |||||||||||||| | || |||||||| ||||||| |||| Sbjct 358 AATTTCCGAAACCCGCAACGCCTGGATCGCCCGCTCCGCCCCTCTCTACTCCCCCCTCTC 417 Query 450 TCCCTGGAACTCCAACTTCCATCCCTTAAGTTGTCTCCTCCAAACTTAA 498 |||||| |||||| ||||||||||||| ||||||||||||||||||||| Sbjct 418 TCCCTGCAACTCCGACTTCCATCCCTTGAGTTGTCTCCTCCAAACTTAA 466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28630310667 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5