BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33590.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491325 jgi|Araly1|491325|fgenesh2_kg.7__758__AT4G33590.1 2296 0.0
Ahg491324 jgi|Araly1|491324|fgenesh2_kg.7__757__AT4G33600.1 636 0.0
> Ahg491325 jgi|Araly1|491325|fgenesh2_kg.7__758__AT4G33590.1
Length=1524
Score = 2296 bits (1243), Expect = 0.0
Identities = 1435/1529 (94%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 1 AAACTAAACAGATTCTGCCTCACTCTATTTGATTCACAATGACAACTAAAGCTAGTGTTT 60
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 AAACTAAACTGATTCTGCTTCACTCTATTTGATTCATAATGACAACTAAAGCTAGTGCTT 60
Query 61 GGCGAAGGCTAGTTACTTGCTTATCCTCTCTTAAGTTCTACTTGAACGTCTTGTGCCTCG 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GGCGAAGGCTAGTTACTTGCTTATCCTCCCTTAAGTTCTACTTGAACGTCTTGTGCCTCG 120
Query 121 TTGTCACTGTTTTTGTTCTTCTCCAAATCTGTTCATTTCAAATTACTCAACGTTCTCTTT 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TTGTCACTGGTTTTGTTCTTCTCCAACTCTGTTCATTTCAAATTACTCAACGTTCTCTTT 180
Query 181 CACTCCCTCCTGCACTCTTGACGTATCTGAAACA-CAATCATGAAGAAGTATCAGAGAAC 239
|||||||||| ||||||||||||||||||| ||| | | | |||| || |||| ||||||
Sbjct 181 CACTCCCTCCGGCACTCTTGACGTATCTGAGACACCGA-CCTGAACAATTATCCGAGAAC 239
Query 240 AAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCCGTGACATTCCTTCCACTCAAAGAC 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 AAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCGGTGACATTCCTTCCACTCAAAGAC 299
Query 300 TATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCTATGAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCTATGAT 359
Query 360 AATCAAACCAAAGGTGAGGCTCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAGGAAGG 419
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 AACCAAACCAAAGGTGAGGCGCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAGGAAGG 419
Query 420 CTTTTGTGTTTGAAAGGGGTTGATGAACATGATGGGTCATGGAACTCCTACG-CGCTGGC 478
|||||||| ||||||||||||||||| ||||||||||||||||||| ||||| | |||||
Sbjct 420 CTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTACGTC-CTGGC 478
Query 479 TTGGCCTGAAGCTCTTCCTACCAATGCCATTCTTCAGGATGGCTTGACGTTTGTCTCTTA 538
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 479 TTGGCCTGAAGCTCTTCCAACCAATGCCATTCTTCAGGAGGGCTTGACGTTTGTTTCTTA 538
Query 539 CAATCAATATGATTATGGTAACTTGTGGCATGGACTAACGGCAGTAGTTCCATTTATTGC 598
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 539 CAATCAATATGATTATGGTAACTTGTGGCATGGACTAACGGCAGCAGTCCCATTTGTTGC 598
Query 599 TTGGAGCTTAAGAAATCAATGTGAAAAGCCTCAAAAATGGGTTTTATACCACTGGGGAGA 658
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGGAGCTTAAGAAACCAATGCGAAAAGCCTCAAAAATGGGTTTTATACCACTGGGGAGA 658
Query 659 ACTAAGGTTCGGAATGGGGCATTGGCTGAGCGAGATAGTCACAGCCACTTACGGTCAAGA 718
|||||||||||| |||||||| ||| ||||||||||| ||||| | | |||||||||||
Sbjct 659 ACTAAGGTTCGGGATGGGGCACTGGTTGAGCGAGATAATCACATCGATTTACGGTCAAGC 718
Query 719 ACCGGACTTTTTACGGTTTGTTGATGATGATAAGCCTGTTTGTTTCGAGAAGGCGGTTGT 778
||| |||||||||| |||||||||| | |||||||| || ||||||||||||||||||||
Sbjct 719 ACCAGACTTTTTACAGTTTGTTGATCAGGATAAGCCGGTCTGTTTCGAGAAGGCGGTTGT 778
Query 779 TATGAGACATAATGAAGGTGGAATGTCAAGGGAGAGAAGAATGGAAGCTTTTGATCTCAT 838
||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 779 TATGAGACACAATGAAGGTGGAATGTCAAGGGAGAGAAGAATAGAGGTTTTTGATCTCAT 838
Query 839 TAGATGCAAAGCGAGGAATTACTGTAATATCAGCTCATCTGTGGCATCAAAACCGCGAAT 898
|||||||||||||||||| |||||||||||||||||||| | | |||| |||||| ||||
Sbjct 839 TAGATGCAAAGCGAGGAACTACTGTAATATCAGCTCATCGGAGACATCCAAACCGAGAAT 898
Query 899 CGGTATGACATTACTATTGAGAACCGGAGCCAGATCTTTCAGAAATGAATCAATGGTGAT 958
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 899 CGGTATGACATTGCTATTGAGAACTGGAGCCAGATCTTTCAGAAATGAGTCAGTGGTGAT 958
Query 959 TGATGTCTTTAAGAAAGAGTGTAAGAGAGTAGATGGGTGTGAAATTAGTGTTTCATATTC 1018
|||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 959 TGATGTATTTAAGAGAGAGTGTAAGAGAGTAGATGGGTGTGAACTTAATGTTTCATATTC 1018
Query 1019 GAATAATCTATCATTTTGTGAGCAAGTGGAGCTAATGAAGAAGACCGATGTGTTAGTGTC 1078
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 GAATAATCTAACATTTTGTGAGCAAGTGGAGCTAATGAAGAAGACCGATGTGTTAGTATC 1078
Query 1079 ACCGCACGGTGCACAACTCACTAACTTGTTTCTAATGGATAAAAATAGTAGTGTAATGGA 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACCACACGGTGCACAACTCACTAACTTGTTTCTAATGGATAAAAATAGTAGTGTAATGGA 1138
Query 1139 GTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCAGCTTGTGTTCCAATGGGG 1198
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 GTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCAGCTTGTATTCCAATGGGG 1198
Query 1199 AGCTAATTGGTCAGGGATGAGACACGAAGGCTCTTGGCACGACCCGGTTGGCGAAATATG 1258
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1199 AGCTAATTGGTCAGGGATGAGACATGAAGGCTCTTGGCATGACCCGGTGGGCGAAATATG 1258
Query 1259 TCAATTCCCCGATACAGACAGGCGGTGTATGTCCATCTACAAGAACGCTATGATTGGATA 1318
|||||||||| |||| || ||||| |||||||| ||||| |||||||||| ||| |||||
Sbjct 1259 TCAATTCCCCTATACGGATAGGCGATGTATGTCGATCTATAAGAACGCTAAGATCGGATA 1318
Query 1319 CAATGAGACTTATTTTGGCGAGTGGGCAAGAAGAGTTTTGGGTAAGTTTAGCATAAGAGA 1378
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 CAATGAGACTTATTTTGGTGAGTGGGCAAGAAGAGTTTTGCGTAAGTTTAGCATAAGAGA 1378
Query 1379 GATGAAAGAGCTTGCAGAGTGCAACCACAGTAATAGTTCAATATTAGATGTATGTAGTTG 1438
|||||||||||| ||||||||||||||| |||||||||| | | |||||||||||||||
Sbjct 1379 GATGAAAGAGCTAGCAGAGTGCAACCACGGTAATAGTTCG-T-T-AGATGTATGTAGTTG 1435
Query 1439 ATATTCAATGTAAAATCTACATTATAACCATATGACAATTTGATGAGGCAGGGTCAGTTC 1498
||||||||||| || ||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 1436 ATATTCAATGTGAAGTCTACATTATATCCATCTGACAATTTGATGAGGCATGGTCAGTTC 1495
Query 1499 TAAGTCTTATGGATTTGTTTTGTTGATAC 1527
||| |||||||||| ||||||||||||||
Sbjct 1496 TAAATCTTATGGATATGTTTTGTTGATAC 1524
> Ahg491324 jgi|Araly1|491324|fgenesh2_kg.7__757__AT4G33600.1
Length=1359
Score = 636 bits (344), Expect = 0.0
Identities = 585/699 (84%), Gaps = 26/699 (4%)
Strand=Plus/Plus
Query 66 AGGCTAGTTACTTGCTTATCCTCTCTTAAGTTCTACTTGAACGTCTTGTGCCTCGTTGTC 125
|||||||||||||||||| |||| | |||||||| ||||||||||||||| || || |||
Sbjct 25 AGGCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCCTTGAACGTCTTGTGTCTTGTCGTC 84
Query 126 ACTGTTTTTGTTCTTCTCCAAATCTGTTCATTTCAAATTACTCAACGTTCTC-TTTCACT 184
|| |||||||||||||| |||||||| |||||||| ||||| |||| | | ||| |||
Sbjct 85 ACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCACATTACCCAAC-AGCCCATTTTACT 143
Query 185 CCCTCCTGCACTCTTGACGTATCT----G-A-AAC-AC-A-ATCATG-A-AGA-AGTATC 232
|||||| |||| || || ||||| | | ||| || | | | || | | | | ||||
Sbjct 144 TCCTCCTTCACTATTCACATATCTGAAAGAACAACAACAAGAACCTGAACAAATAATATC 203
Query 233 AGAGAACAAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCCGTGACATTCCTTCCACT 292
|||||| ||||||||| |||||||||||| |||||||| || || ||||||||||| ||
Sbjct 204 TGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGTGAGTCGGTAACATTCCTTCCTCT 263
Query 293 CAAAGA-CTATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTC 351
||||| || ||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 264 GAAAGACCT-TCGTTTTTCAAACAAACCACTCGAAGGTCATACTTGGTTTATGAGCTCTC 322
Query 352 TCTATGATAATCAAACCAAAGGTGAGGCTCAGTATCAAGAATTTCCTTCAGATTCTTCGA 411
|||| ||||| ||||| |||||||| | ||| |||||||||||||||||||| ||||| |
Sbjct 323 TCTACGATAACCAAACAAAAGGTGAAGTTCAATATCAAGAATTTCCTTCAGAATCTTCAA 382
Query 412 AAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAACATGATGGGTCATGGAACTCCTACG 471
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 383 AAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTATG 442
Query 472 CGCTGGCTTGGCCTGAAGCTCTTCCTACCAATGCCATTCTTCAGGATGGCTTGACGTTTG 531
| |||||||||||| |||||||||| |||||||| ||| ||||| || ||||| ||||
Sbjct 443 CACTGGCTTGGCCTCAAGCTCTTCCGGTCAATGCCAGTCTCCAGGAGGGATTGACATTTG 502
Query 532 TCTCTTACAATCAATAT-GATTATGGTAACTTGTGGCATGGACTAACGGC-AGTAGTTCC 589
| || || ||||| || | ||| |||||| |||||||||||||| | || | | || ||
Sbjct 503 TTTCCTATAATCATTACAG-TTACGGTAACATGTGGCATGGACTATCCGCCA-TGGTCCC 560
Query 590 ATTTATTGCTTGGAGCTTAAGAAATCAATGTGAAAAG-CCTCAAAAATGGGTTTTATACC 648
||| ||||||||||||||||||| ||||| |||| | ||||||| |||||||||||||
Sbjct 561 GTTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAA-GTCCTCAAAGGTGGGTTTTATACC 619
Query 649 ACTGGGGAGAACTAAGGTTCG-GAATGGGGCATTGGCTGAGCGAGATAGTCACAGCCACT 707
| ||||||||||| |||||| || ||||| | ||| |||| |||||| | ||||| |||
Sbjct 620 ATTGGGGAGAACTCAGGTTCAAGA-TGGGGAACTGGTTGAGTGAGATAATAACAGCTACT 678
Query 708 TACGGTCAAGAAC-CGGACTTTTTACGGTTTGTTGATGA 745
|||||||| |||| | | ||||||||||||||||||||
Sbjct 679 TACGGTCA-GAACACCAAATTTTTACGGTTTGTTGATGA 716
Score = 588 bits (318), Expect = 4e-167
Identities = 484/564 (86%), Gaps = 12/564 (2%)
Strand=Plus/Plus
Query 809 GGAGAGAAGAATGGAAGCTTTTGATCTCATTAGATGCAAAGCGAGGAATTACTGTAATAT 868
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 729 GGAGAGAAGAATGGAAGCCTTTGATCTCATTAGATGCAAAGCGAGAAAATACTGTAACAT 788
Query 869 CAGCTCATCTGTGGCATCAAAACCGCGAATCGGTATGACATTACTATTGAGAACCGGAGC 928
|||| || | ||||| || ||||||| ||||||||||| ||| ||||||||||| |
Sbjct 789 AAGCTTGTCCCAGACATCAGAATCGCGAATAGGTATGACATTGCTAATGAGAACCGGA-C 847
Query 929 C-AGATCTTTC-AGAAATGAATCAATGGTGATTGATGTCTTTAAGAAAGAGTGTAAGAGA 986
| ||||| ||| || ||||| ||| ||||||||||||||||||| |||||||| |||
Sbjct 848 CAAGATCGTTCAAG-AATGAGTCAGCCGTGATTGATGTCTTTAAGAGGGAGTGTAAAAGA 906
Query 987 GTAGATGGGTGTGAAATT--AGTGTTTCATATTCGAATAATCTATCATTTTGTGAGCAAG 1044
|| || ||||||| |||| || ||||| ||||| ||||||||| |||||||||||||||
Sbjct 907 GTTGAAGGGTGTG-AATTGAAG-GTTTCTTATTCAAATAATCTAACATTTTGTGAGCAAG 964
Query 1045 TGGAGCTAATGAAGAA-GACCGATGTGTTAGTGTCACCGCACGGTGCACAACTCACTAAC 1103
||||||| ||||| || ||| ||||| ||||| ||||| || |||||||| || ||||||
Sbjct 965 TGGAGCTGATGAA-AATGACTGATGTTTTAGTATCACCACATGGTGCACAGCTTACTAAC 1023
Query 1104 TTGTTTCTAATGGATAAAAATAGTAGTGTAATGGAGTTTTTCCCCAAAGGATGGCTTAAG 1163
||| |||||||||||| ||||||||| || ||||| ||| |||| |||||||||| ||||
Sbjct 1024 TTGGTTCTAATGGATAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAG 1083
Query 1164 CTTGCAGGAGTTGGCCAGCTTGTGTTCCAATGGGGAGCTAATTGGTCAGGGATGAGACAC 1223
|||||||||||||| |||||||||| |||||||||||||| ||||||||| ||| |||||
Sbjct 1084 CTTGCAGGAGTTGGTCAGCTTGTGTACCAATGGGGAGCTAGTTGGTCAGGAATGCGACAC 1143
Query 1224 GAAGGCTCTTGGCACGACCCGGTTGGCGAAATATGTCAATTCCCCGATACAGACAGGCGG 1283
|||||||| ||||| || || | ||| ||||||||||| || |||||||| || |||||
Sbjct 1144 GAAGGCTCGTGGCATGATCCAGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGA 1203
Query 1284 TGTATGTCCATCTACAAGAACGCTATGATTGGATACAATGAGACTTATTTTGGCGAGTGG 1343
|||||||| |||| ||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1204 TGTATGTCGGTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGG 1263
Query 1344 GC-AAGAAGAGTTTTGGGTAAGTT 1366
|| || ||| ||||||||||||||
Sbjct 1264 GCGAA-AAGTGTTTTGGGTAAGTT 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5