BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33600.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491325 jgi|Araly1|491325|fgenesh2_kg.7__758__AT4G33590.1 1362 0.0
Ahg491324 jgi|Araly1|491324|fgenesh2_kg.7__757__AT4G33600.1 1146 0.0
> Ahg491325 jgi|Araly1|491325|fgenesh2_kg.7__758__AT4G33590.1
Length=1524
Score = 1362 bits (737), Expect = 0.0
Identities = 1142/1332 (86%), Gaps = 49/1332 (4%)
Strand=Plus/Plus
Query 48 CTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCCTTGAACGTCTTGTGTCTTGTCGTCACA 107
||||||||||||||| |||||| |||||||| ||||||||||||||| || || |||||
Sbjct 69 CTAGTTACTTGCTTATCCTCCCTTAAGTTCTACTTGAACGTCTTGTGCCTCGTTGTCACT 128
Query 108 GTTTTTGTTCTTCTTCAAATCTGGTCATTTCACATTACCCAAC-AACCCATTTTACTTCC 166
| |||||||||||| ||| |||| |||||||| ||||| |||| | | ||| ||| ||
Sbjct 129 GGTTTTGTTCTTCTCCAACTCTGTTCATTTCAAATTACTCAACGTTCTC-TTTCACTCCC 187
Query 167 TCCTTCACTATTCACATATCTAAAAGAACAACAACAAGAACCTGAACAAATAAAATCTGA 226
||| |||| || || ||||| || || || | | |||||||| ||| ||| ||
Sbjct 188 TCCGGCACTCTTGACGTATCT--GAG-AC-AC--C--G-ACCTGAAC-AAT--TATCCGA 235
Query 227 GAACGAGACGGCTTACTTGGTGGAGAAACTACGTGAGTCGGTAACATTCCTTCCCCTGAA 286
|||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||| || ||
Sbjct 236 GAACAAGACGGCTTCCTTGGTGGAGAAGCTACGTGAATCGGTGACATTCCTTCCACTCAA 295
Query 287 AGACCT-TCGTTTTTCAAACAAACCACTTGAAGGTCATACTTGGTTTATGAGCTCTCTCT 345
||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 AGA-CTATCGTTTTTCGAACAAACCACTTGAAGGTCATACTTGGTTCATGAGCTCTCTCT 354
Query 346 ACGATAACCAAACAAAAGGTGAGGTTCAATATCAAGAATTTCCTTCGGAATCTTCGAAAG 405
| ||||||||||| |||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 355 ATGATAACCAAACCAAAGGTGAGGCGCAGTATCAAGAATTTCCTTCAGATTCTTCGAAAG 414
Query 406 GAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGATCATGGAACTACTATG-CA 464
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 415 GAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGGTCATGGAACTACTACGTC- 473
Query 465 CTGGCTTGGCCTCAAGCTCTTCCTGTCAATGCCAGTCTCCAGGAGGGATTGACATTTGTC 524
|||||||||||| |||||||||| |||||||| ||| |||||||| ||||| |||||
Sbjct 474 CTGGCTTGGCCTGAAGCTCTTCCAACCAATGCCATTCTTCAGGAGGGCTTGACGTTTGTT 533
Query 525 TCGTATAATCATTACGATTACGGTAA-TATGTGGCATGGACTGTCCGC--CATGGTCCCA 581
|| || ||||| || ||||| ||||| | ||||||||||||| | || || | |||||
Sbjct 534 TCTTACAATCAATATGATTATGGTAACT-TGTGGCATGGACTAACGGCAGCA-G-TCCCA 590
Query 582 TTTGTTGCTTGGAGCTTAAGACACCAGTGCGAAAATCCTCAAAGATGGGTTTTATACCAT 641
||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||
Sbjct 591 TTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAAAGCCTCAAAAATGGGTTTTATACCAC 650
Query 642 TGGGGAGAACTCAGGTTCAAGATGGGGAATTGGTTGAACGAGATAATCACAGCGACTTAC 701
||||||||||| |||||| ||||||| | ||||||| ||||||||||||| ||| ||||
Sbjct 651 TGGGGAGAACTAAGGTTCGGGATGGGGCACTGGTTGAGCGAGATAATCACATCGATTTAC 710
Query 702 GGTCAGAACAC-AGAATTTTTACGGTTTCGT-GATAAGAACAGGCCGGTTTGCTTT-GAG 758
||||| | ||| ||| ||||||| |||| || ||| || | | |||||| || ||| |||
Sbjct 711 GGTCA-AGCACCAGACTTTTTACAGTTT-GTTGATCAGGATAAGCCGGTCTG-TTTCGAG 767
Query 759 AAGGCGGTTGTTATGAGACATAATGAAGGTGGAATGTCAAGGGAGAGAAGAATGGAAGTC 818
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 768 AAGGCGGTTGTTATGAGACACAATGAAGGTGGAATGTCAAGGGAGAGAAGAATAGAGGTT 827
Query 819 TTTGATCTCATTAGATGCAAAGCCAG-ACACTATTGTAACATAAGCTTGTCCGAGACATC 877
||||||||||||||||||||||| || | |||| ||||| || |||| || ||||||||
Sbjct 828 TTTGATCTCATTAGATGCAAAGCGAGGA-ACTACTGTAATATCAGCTCATCGGAGACATC 886
Query 878 AAAATC-ACGAATAGGTATGACATTGCTAATGAGAACCGGA-CCAAGATCATTCAAGAA- 934
||| | | |||| ||||||||||||||| ||||||| ||| ||| |||| |||| |||
Sbjct 887 CAAACCGA-GAATCGGTATGACATTGCTATTGAGAACTGGAGCCA-GATCTTTCA-GAAA 943
Query 935 TGAGTCAGCCGTGATCGATATCTTTAAGAGAGAGTGTAAAA-ATGTAGAAGGGTGTGAA- 992
|||||||| ||||| ||| | ||||||||||||||||| | | ||||| |||||||||
Sbjct 944 TGAGTCAGTGGTGATTGATGTATTTAAGAGAGAGTGTAAGAGA-GTAGATGGGTGTGAAC 1002
Query 993 TTGAAAGTTTCTTATTCAAATAATCTAACATTCTGTGAGCAAGTGGAGCTGATGA-GAAT 1051
|| || ||||| ||||| |||||||||||||| ||||||||||||||||| |||| |||
Sbjct 1003 TT-AATGTTTCATATTCGAATAATCTAACATTTTGTGAGCAAGTGGAGCTAATGAAGAA- 1060
Query 1052 GACCGATGTGTTAGTATCACCACACGGTGCACAACTTACTAATTTGGTTCTAATGGACAG 1111
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
Sbjct 1061 GACCGATGTGTTAGTATCACCACACGGTGCACAACTCACTAACTTGTTTCTAATGGATAA 1120
Query 1112 AAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTGCAGGAGTTGGTCA 1171
||||||||| || ||||| ||| |||| |||||||||| |||||||||||||||||| ||
Sbjct 1121 AAATAGTAGTGTAATGGAGTTTTTCCCCAAAGGATGGCTTAAGCTTGCAGGAGTTGGCCA 1180
Query 1172 GCTTGTGTACCAATGGGGAACTAGGTGGTCAGGAATGAGACATGAAGGCTCGTGGCATGA 1231
|||||| | |||||||||| ||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1181 GCTTGTATTCCAATGGGGAGCTAATTGGTCAGGGATGAGACATGAAGGCTCTTGGCATGA 1240
Query 1232 CCCGGATGGG-GAAATATGTCAGTTTCCCGATACTGATAGGCGATGTATGTCGTCCGTCT 1290
||||| |||| ||||||||||| || ||| |||| |||||||||||||||||| |||
Sbjct 1241 CCCGG-TGGGCGAAATATGTCAATTCCCCTATACGGATAGGCGATGTATGTCGA---TCT 1296
Query 1291 ATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGGCAAAAAGTGTTT 1350
||||||||| || ||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1297 ATAAGAACGCTAAGATCGGATACAATGAGACTTATTTTGGTGAGTGGGCAAGAAGAGTTT 1356
Query 1351 TGGGTAAGTTTA 1362
|| |||||||||
Sbjct 1357 TGCGTAAGTTTA 1368
> Ahg491324 jgi|Araly1|491324|fgenesh2_kg.7__757__AT4G33600.1
Length=1359
Score = 1146 bits (620), Expect = 0.0
Identities = 693/728 (95%), Gaps = 6/728 (1%)
Strand=Plus/Plus
Query 21 ATGACTAAACGCAGCGTTTCAAGGAATCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCC 80
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTAAACGCAGCGTTTCAAGGAGGCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCC 60
Query 81 TTGAACGTCTTGTGTCTTGTCGTCACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCAC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAACGTCTTGTGTCTTGTCGTCACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCAC 120
Query 141 ATTACCCAACAACCCATTTTACTTCCTCCTTCACTATTCACATATCTAAAAGAACAACAA 200
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATTACCCAACAGCCCATTTTACTTCCTCCTTCACTATTCACATATCTGAAAGAACAACAA 180
Query 201 CAAGAACCTGAACAAATAAAATCTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGT 260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGAACCTGAACAAATAATATCTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGT 240
Query 261 GAGTCGGTAACATTCCTTCCCCTGAAAGACCTTCGTTTTTCAAACAAACCACTTGAAGGT 320
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GAGTCGGTAACATTCCTTCCTCTGAAAGACCTTCGTTTTTCAAACAAACCACTCGAAGGT 300
Query 321 CATACTTGGTTTATGAGCTCTCTCTACGATAACCAAACAAAAGGTGAGGTTCAATATCAA 380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CATACTTGGTTTATGAGCTCTCTCTACGATAACCAAACAAAAGGTGAAGTTCAATATCAA 360
Query 381 GAATTTCCTTCGGAATCTTCGAAAGGAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCAT 440
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GAATTTCCTTCAGAATCTTCAAAAGGAAGGCTTTTGTGTTTGAAAGGGGTTGATGAGCAT 420
Query 441 GATGGATCATGGAACTACTATGCACTGGCTTGGCCTCAAGCTCTTCCTGTCAATGCCAGT 500
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GATGGGTCATGGAACTACTATGCACTGGCTTGGCCTCAAGCTCTTCCGGTCAATGCCAGT 480
Query 501 CTCCAGGAGGGATTGACATTTGTCTCGTATAATCATTAC-GATTACGGTAATATGTGGCA 559
||||||||||||||||||||||| || |||||||||||| | ||||||||| ||||||||
Sbjct 481 CTCCAGGAGGGATTGACATTTGTTTCCTATAATCATTACAG-TTACGGTAACATGTGGCA 539
Query 560 TGGACTGTCCGCCATGGTCCCATTTGTTGCTTGGAGCTTAAGACACCAGTGCGAAAATCC 619
|||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||
Sbjct 540 TGGACTATCCGCCATGGTCCCGTTTGTTGCTTGGAGCTTAAGAAACCAATGCGAAAGTCC 599
Query 620 TCAAAGATGGGTTTTATACCATTGGGGAGAACTCAGGTTCAAGATGGGGAATTGGTTGAA 679
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 TCAAAGGTGGGTTTTATACCATTGGGGAGAACTCAGGTTCAAGATGGGGAACTGGTTGAG 659
Query 680 CGAGATAATCACAGCGACTTACGGTCAGAACAC-AGAATTTTTACGGTTTCGT-GATAAG 737
|||||||| ||||| ||||||||||||||||| | |||||||||||||| || ||| ||
Sbjct 660 TGAGATAATAACAGCTACTTACGGTCAGAACACCA-AATTTTTACGGTTT-GTTGATGAG 717
Query 738 AACAGGCC 745
|||| |||
Sbjct 718 AACAAGCC 725
Score = 946 bits (512), Expect = 0.0
Identities = 596/636 (94%), Gaps = 7/636 (1%)
Strand=Plus/Plus
Query 800 GGAGAGAAGAATGGAAGTCTTTGATCTCATTAGATGCAAAGCCAGACACTATTGTAACAT 859
||||||||||||||||| |||||||||||||||||||||||| ||| | || ||||||||
Sbjct 729 GGAGAGAAGAATGGAAGCCTTTGATCTCATTAGATGCAAAGCGAGAAAATACTGTAACAT 788
Query 860 AAGCTTGTCCGAGACATCAAAATCACGAATAGGTATGACATTGCTAATGAGAACCGGACC 919
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 789 AAGCTTGTCCCAGACATCAGAATCGCGAATAGGTATGACATTGCTAATGAGAACCGGACC 848
Query 920 AAGATCATTCAAGAATGAGTCAGCCGTGATCGATATCTTTAAGAGAGAGTGTAAAA-ATG 978
|||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| | |
Sbjct 849 AAGATCGTTCAAGAATGAGTCAGCCGTGATTGATGTCTTTAAGAGGGAGTGTAAAAGA-G 907
Query 979 TAGAAGGGTGTGAATTGAAAGTTTCTTATTCAAATAATCTAACATTCTGTGAGCAAGTGG 1038
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 908 TTGAAGGGTGTGAATTGAAGGTTTCTTATTCAAATAATCTAACATTTTGTGAGCAAGTGG 967
Query 1039 AGCTGATGAGAATGACCGATGTGTTAGTATCACCACACGGTGCACAACTTACTAATTTGG 1098
||||||||| |||||| ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct 968 AGCTGATGAAAATGACTGATGTTTTAGTATCACCACATGGTGCACAGCTTACTAACTTGG 1027
Query 1099 TTCTAATGGACAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTG 1158
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TTCTAATGGATAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTG 1087
Query 1159 CAGGAGTTGGTCAGCTTGTGTACCAATGGGGAACTAGGTGGTCAGGAATGAGACATGAAG 1218
|||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||
Sbjct 1088 CAGGAGTTGGTCAGCTTGTGTACCAATGGGGAGCTAGTTGGTCAGGAATGCGACACGAAG 1147
Query 1219 GCTCGTGGCATGACCCGGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGATGTA 1278
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GCTCGTGGCATGATCCAGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGATGTA 1207
Query 1279 TGTCGTCCGTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGG 1338
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TGTCG---GTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGG 1264
Query 1339 CAAAAAGTGTTTTGGGTAAGTTTAA-AGAAAGAAAGATGGCAAATGTTGTAGGACGCAAA 1397
| |||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||
Sbjct 1265 CGAAAAGTGTTTTGGGTAAGTT-AAGAGAAAAAAAGATGGAAAATGTTCTAGGACGCAAC 1323
Query 1398 CACAGTTATGGTTCGCTAGATGGATGTTGGTGTTGA 1433
||||||||||||||||||||||||||||||||||||
Sbjct 1324 CACAGTTATGGTTCGCTAGATGGATGTTGGTGTTGA 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5