BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33610.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491323 jgi|Araly1|491323|fgenesh2_kg.7__756__AT1G55990.1 464 4e-130
Ahg935435 jgi|Araly1|935435|scaffold_403423.1 451 3e-126
> Ahg491323 jgi|Araly1|491323|fgenesh2_kg.7__756__AT1G55990.1
Length=438
Score = 464 bits (251), Expect = 4e-130
Identities = 360/408 (88%), Gaps = 25/408 (6%)
Strand=Plus/Plus
Query 298 GGAATGGATGGGAGATTAGTTGGAAGAGAAGGAATGGATGGAATATTAGTCGGAAGAGAA 357
||||||||||||||| |||| ||||||||||||||||| || | ||||||||||||||||
Sbjct 49 GGAATGGATGGGAGACTAGTCGGAAGAGAAGGAATGGACGGGAGATTAGTCGGAAGAGAA 108
Query 358 GGAATTGTTGTTGGAAATGAAGGCAAAGTTGGCATTGGAGGCATTGCC-GTGGGAATGGT 416
||||||||||| |||||||||||||||||||||| |||||||||| || |||||||| ||
Sbjct 109 GGAATTGTTGTCGGAAATGAAGGCAAAGTTGGCACTGGAGGCATT-CCAGTGGGAATTGT 167
Query 417 GGGAAGATTTGGTTGTGGCAAAGCTGATGGCATTGGAAATGGAGACATTGCAGTGGGCAT 476
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 168 TGGAAGATTTGGTTGTGGCAAAGCTGATGGCAATGGAAATGGAGACATTGCAGTGGGCAT 227
Query 477 TGTGGGGAGAGTTGGTAAAGACGGTTGTGGCAACGTCGATGGCAATGGAGGTAGTCCCAT 536
|||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 228 TGTGGGAAGAGTTGGTAAAGATGGTTGTGGCAACGTTGATGTCAATGGAGGTAGTCCCAT 287
Query 537 TGTTGGAATAGGCAGATTTGGGATTTGAGGAAGAGGTTGTTGTTGGAGAAGGCGGCGTGA 596
|||||| || ||||||||||| | | || | |||||||||||||||||||
Sbjct 288 TGTTGGGATTGGCAGATTTGG-A----A--------TT-T-GTTGGAGAAGGCGGCGTGA 332
Query 597 GGCTGAGCAAGTGTTGATCATCATAGAGGAAGAGAGGCACACTA-GAAAAGCAATGCGGA 655
|||||||| |||||||||||||||||||||||||||| ||||| |||| |||||| | |
Sbjct 333 TGCTGAGCATGTGTTGATCATCATAGAGGAAGAGAGGCTCACTAAGAAA-GCAATGAGAA 391
Query 656 AGAGCTTGTATGATGCCATT--T-TGCTT-TGGTTG-TGAATCTCTAA 698
|||||||||||||||||||| | || | || ||| |||||||||||
Sbjct 392 AGAGCTTGTATGATGCCATTGATCTGGGTGTG-TTGATGAATCTCTAA 438
Score = 121 bits (65), Expect = 9e-27
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 220 ATAGTTCAAGGACTCGAAGTAGTTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG 279
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATTCAAGGACTCGATGTAGCTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG 60
Query 280 AGACTAGTCGGCAGAGA 296
||||||||||| |||||
Sbjct 61 AGACTAGTCGGAAGAGA 77
> Ahg935435 jgi|Araly1|935435|scaffold_403423.1
Length=430
Score = 451 bits (244), Expect = 3e-126
Identities = 319/356 (90%), Gaps = 1/356 (0%)
Strand=Plus/Minus
Query 324 AGAA-GGAATGGATGGAATATTAGTCGGAAGAGAAGGAATTGTTGTTGGAAATGAAGGCA 382
|||| ||||||||||| | ||||||||||||||||| |||| |||| |||| ||||||||
Sbjct 372 AGAACGGAATGGATGGGAGATTAGTCGGAAGAGAAGAAATTATTGTCGGAAGTGAAGGCA 313
Query 383 AAGTTGGCATTGGAGGCATTGCCGTGGGAATGGTGGGAAGATTTGGTTGTGGCAAAGCTG 442
||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||
Sbjct 312 AAGTTGGCATTGGAGGCATTGTAGTGGGAATTGTGGGAAGGTTTGGTTGTGGCAAAGTTG 253
Query 443 ATGGCATTGGAAATGGAGACATTGCAGTGGGCATTGTGGGGAGAGTTGGTAAAGACGGTT 502
||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||
Sbjct 252 ATGGCATTGGAAATGGAGACATTACAGTGGGCATTGTGGGAAGAGTTGGTAGAGATGGTT 193
Query 503 GTGGCAACGTCGATGGCAATGGAGGTAGTCCCATTGTTGGAATAGGCAGATTTGGGATTT 562
||||||| || |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 192 GTGGCAAAGTTGATGGCAATGGAGGTAGTCCCATTGTCGGGATAGGCAGATTTGGAATTT 133
Query 563 GAGGAAGAGGTTGTTGTTGGAGAAGGCGGCGTGAGGCTGAGCAAGTGTTGATCATCATAG 622
|||||||||| ||||| || ||||| |||||||| ||||||||||||||||| | |
Sbjct 132 GAGGAAGAGGCTGTTGCTGAAGAAGTTTACGTGAGGCCGAGCAAGTGTTGATCATGGTGG 73
Query 623 AGGAAGAGAGGCACACTAGAAAAGCAATGCGGAAGAGCTTGTATGATGCCATTTTG 678
|||||||||| | ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 72 AGGAAGAGAGACTCACTAAAAAAGCAATGAGAAAGAGCTTGTATGATGCCATTTTG 17
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5