BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33610.1 Length=733 Score E Sequences producing significant alignments: (Bits) Value Ahg491323 jgi|Araly1|491323|fgenesh2_kg.7__756__AT1G55990.1 464 4e-130 Ahg935435 jgi|Araly1|935435|scaffold_403423.1 451 3e-126 > Ahg491323 jgi|Araly1|491323|fgenesh2_kg.7__756__AT1G55990.1 Length=438 Score = 464 bits (251), Expect = 4e-130 Identities = 360/408 (88%), Gaps = 25/408 (6%) Strand=Plus/Plus Query 298 GGAATGGATGGGAGATTAGTTGGAAGAGAAGGAATGGATGGAATATTAGTCGGAAGAGAA 357 ||||||||||||||| |||| ||||||||||||||||| || | |||||||||||||||| Sbjct 49 GGAATGGATGGGAGACTAGTCGGAAGAGAAGGAATGGACGGGAGATTAGTCGGAAGAGAA 108 Query 358 GGAATTGTTGTTGGAAATGAAGGCAAAGTTGGCATTGGAGGCATTGCC-GTGGGAATGGT 416 ||||||||||| |||||||||||||||||||||| |||||||||| || |||||||| || Sbjct 109 GGAATTGTTGTCGGAAATGAAGGCAAAGTTGGCACTGGAGGCATT-CCAGTGGGAATTGT 167 Query 417 GGGAAGATTTGGTTGTGGCAAAGCTGATGGCATTGGAAATGGAGACATTGCAGTGGGCAT 476 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 168 TGGAAGATTTGGTTGTGGCAAAGCTGATGGCAATGGAAATGGAGACATTGCAGTGGGCAT 227 Query 477 TGTGGGGAGAGTTGGTAAAGACGGTTGTGGCAACGTCGATGGCAATGGAGGTAGTCCCAT 536 |||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| Sbjct 228 TGTGGGAAGAGTTGGTAAAGATGGTTGTGGCAACGTTGATGTCAATGGAGGTAGTCCCAT 287 Query 537 TGTTGGAATAGGCAGATTTGGGATTTGAGGAAGAGGTTGTTGTTGGAGAAGGCGGCGTGA 596 |||||| || ||||||||||| | | || | ||||||||||||||||||| Sbjct 288 TGTTGGGATTGGCAGATTTGG-A----A--------TT-T-GTTGGAGAAGGCGGCGTGA 332 Query 597 GGCTGAGCAAGTGTTGATCATCATAGAGGAAGAGAGGCACACTA-GAAAAGCAATGCGGA 655 |||||||| |||||||||||||||||||||||||||| ||||| |||| |||||| | | Sbjct 333 TGCTGAGCATGTGTTGATCATCATAGAGGAAGAGAGGCTCACTAAGAAA-GCAATGAGAA 391 Query 656 AGAGCTTGTATGATGCCATT--T-TGCTT-TGGTTG-TGAATCTCTAA 698 |||||||||||||||||||| | || | || ||| ||||||||||| Sbjct 392 AGAGCTTGTATGATGCCATTGATCTGGGTGTG-TTGATGAATCTCTAA 438 Score = 121 bits (65), Expect = 9e-27 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 220 ATAGTTCAAGGACTCGAAGTAGTTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG 279 ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 ATAATTCAAGGACTCGATGTAGCTGCAGAAGGCGGGGGAGAGAAGAACGGAATGGATGGG 60 Query 280 AGACTAGTCGGCAGAGA 296 ||||||||||| ||||| Sbjct 61 AGACTAGTCGGAAGAGA 77 > Ahg935435 jgi|Araly1|935435|scaffold_403423.1 Length=430 Score = 451 bits (244), Expect = 3e-126 Identities = 319/356 (90%), Gaps = 1/356 (0%) Strand=Plus/Minus Query 324 AGAA-GGAATGGATGGAATATTAGTCGGAAGAGAAGGAATTGTTGTTGGAAATGAAGGCA 382 |||| ||||||||||| | ||||||||||||||||| |||| |||| |||| |||||||| Sbjct 372 AGAACGGAATGGATGGGAGATTAGTCGGAAGAGAAGAAATTATTGTCGGAAGTGAAGGCA 313 Query 383 AAGTTGGCATTGGAGGCATTGCCGTGGGAATGGTGGGAAGATTTGGTTGTGGCAAAGCTG 442 ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| || Sbjct 312 AAGTTGGCATTGGAGGCATTGTAGTGGGAATTGTGGGAAGGTTTGGTTGTGGCAAAGTTG 253 Query 443 ATGGCATTGGAAATGGAGACATTGCAGTGGGCATTGTGGGGAGAGTTGGTAAAGACGGTT 502 ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||| Sbjct 252 ATGGCATTGGAAATGGAGACATTACAGTGGGCATTGTGGGAAGAGTTGGTAGAGATGGTT 193 Query 503 GTGGCAACGTCGATGGCAATGGAGGTAGTCCCATTGTTGGAATAGGCAGATTTGGGATTT 562 ||||||| || |||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 192 GTGGCAAAGTTGATGGCAATGGAGGTAGTCCCATTGTCGGGATAGGCAGATTTGGAATTT 133 Query 563 GAGGAAGAGGTTGTTGTTGGAGAAGGCGGCGTGAGGCTGAGCAAGTGTTGATCATCATAG 622 |||||||||| ||||| || ||||| |||||||| ||||||||||||||||| | | Sbjct 132 GAGGAAGAGGCTGTTGCTGAAGAAGTTTACGTGAGGCCGAGCAAGTGTTGATCATGGTGG 73 Query 623 AGGAAGAGAGGCACACTAGAAAAGCAATGCGGAAGAGCTTGTATGATGCCATTTTG 678 |||||||||| | ||||| |||||||||| | |||||||||||||||||||||||| Sbjct 72 AGGAAGAGAGACTCACTAAAAAAGCAATGAGAAAGAGCTTGTATGATGCCATTTTG 17 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26991025236 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5