BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33620.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944565 jgi|Araly1|944565|scaffold_700794.1 1866 0.0
> Ahg944565 jgi|Araly1|944565|scaffold_700794.1
Length=2376
Score = 1866 bits (1010), Expect = 0.0
Identities = 1173/1253 (94%), Gaps = 6/1253 (0%)
Strand=Plus/Plus
Query 1 ATGACTCTCCGGTCAGTTCAATCCCGAAGTAAGCGGAAACCGATTG-ATGTATTTGATTA 59
|||| |||||| ||||||||||| || ||||||||||| ||| ||| | ||||| |||||
Sbjct 21 ATGAGTCTCCGCTCAGTTCAATCTCGCAGTAAGCGGAAGCCGCTTGCA-GTATTCGATTA 79
Query 60 CTCTGACGAGGATGACCGTGTTGAAGAGGAGTCGAAGAAACTCCTTCGCAAATTCGATTC 119
| |||||||||| || ||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 80 CACTGACGAGGAAGAACGTATTGAAAAGGTGTCGAAGAAACTCCTTCGCAAATTCGATTC 139
Query 120 CCCAGTTACT-AAAAAACAC-CACTGCGCCATCGATAAGTATGAATTCCTTCGATGCTTT 177
|||||||||| ||||||| | || |||||||||||||||||||| ||||||||||| |||
Sbjct 140 CCCAGTTACTGAAAAAAC-CTCA-TGCGCCATCGATAAGTATGACTTCCTTCGATGTTTT 197
Query 178 GCGAAGGATACCCAAAGCGAGAGTAAAGTATTGCAACACATTGTTATTGATGTTGAAGTC 237
||| || | |||||| |||||||||||| | || | |||||||| ||||||| |||||||
Sbjct 198 GCGCAGAAAACCCAAGGCGAGAGTAAAGAACTGGACCACATTGTCATTGATGCTGAAGTC 257
Query 238 CCAGTAAAAGAAGAACCGTCAAGATGTGAACTCAGCGGAGATGGAAATAGTGACCTGATT 297
|||| |||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 258 CCAGCAAAAGAAGAACCGTCAAGGTGTGAACTCAGCGGAGATGGCACTATTGACCTGATT 317
Query 298 GATGTTATCTCCAATGGCTCCCATAGAAGGATTGGAATCGATTCATTAACGTCATCATCT 357
|| || |||||||| ||||||||| |||| |||||| ||||||||| ||| |||||||||
Sbjct 318 GACGTAATCTCCAAAGGCTCCCATGGAAGCATTGGAGTCGATTCATCAACTTCATCATCT 377
Query 358 CTGTCGGAAAATGATGAAGTTTCAACTGGAGAAGCCACAAATCCTGCTTCTGATCCACAT 417
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 378 CTGTCGGAAAATGATGAAGCTTCAACTGGAGAAGCCACAAATCCTGCTCCTGATCCACAT 437
Query 418 GAAGTTGATCCCGAGAATGCACAAGTTCTTATTATCCCTGATGTTATTATATATGGAGAT 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GAAGTTGATCCAGAGAATGCACAAGTTCTTATTATCCCTGATGTTATTATATATGGAGAT 497
Query 478 ATATACTGTACAAACTCGAAGTTAACATTTTCACGCAACTGTATGAATGTTGAAAGTTCT 537
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 498 ATCTACTGTACAAACTCGAAGTTAACATTTTCACGCAACTGTATCAGCGTTGAAAGTTCA 557
Query 538 TCAGTAAATGCAACTAAAGGGACCTTTAGTTGTCAGTGGACAATAGAAGATATCATCAAA 597
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 TCAGTTAATGCAACTAAAGGGACCTTTAGTTCTCAGTGGACAATAGAAGATATCATCAAA 617
Query 598 ATTGAGTCTCAGTGGTGTTTAGAGGTTGAGACTGCCTTTGTTAACGTCCTTCTGAAGTCC 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 618 ATTGAGTCTCAGTGGTGTTTAGAGGTTGAGACTGCCTTTGTCAACGTCCTTCTTAAGTCC 677
Query 658 AGGAAGCCTGAAGGAGTTGATATTGCGAAAGATATTTCAGGAATTGATCTCCTAAAATTT 717
||| |||||||||||||| | | ||| |||||||||||||||||||||||||||||||||
Sbjct 678 AGGGAGCCTGAAGGAGTTCACAGTGCAAAAGATATTTCAGGAATTGATCTCCTAAAATTT 737
Query 718 TCCGTGTATGACCCTAAATGGTCTAAAGAAGTAGAAACCATCAGATCGTTGGACTCGAGA 777
||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 738 TCCGTGTATGACCCTAAATGGTCTAAAGAAGTAGACACCATCAAATCACTGGACTCGAGA 797
Query 778 TACAAGAATATTTGGTTTGACACCATAACAGAGAGCGAGGAAATTGCTTTTAGTGGACAT 837
||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||
Sbjct 798 TACAAGAATATTTGGTTTGACACCATAACCGAAAGCGAGGAAAGTGTTTTTAGTGGACAT 857
Query 838 GATTTGGGAACTTCACTCACCAACCTCGCTGATTCATTTGAAGATCTAGTTTACCCTCAA 897
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 858 GATTTGGGAACTTCACTCACCAATCTCGCTGATTCCTTTGAAGATCTAGTCTACCCCCAA 917
Query 898 GGAGAGCCAGATGCTGTAGTAGTTAGGAAGCAAGACATTGAGCTTCTGAAGCCAAGACGT 957
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 918 GGAGAGCCAGATGCTGTAGTAGTTAGGAAGCAAGATATTGAGCTTCTGAAGCCAAGGCGT 977
Query 958 TTCATCAACGATACAATCATTGATTTTTATATCAAGTACCTTAAGAATCGAATTTCACCG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 TTCATCAACGATACAATCATTGATTTTTATATCAAGTACCTTAAGAATCGAATTCCACCG 1037
Query 1018 AAGGAACGGGGCAGATTCCACTTTTTCAATTGTTTCTTTTTCCGGAAGCTGGCTAACTTA 1077
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1038 AAGGAACGGGGCAGATTCCACTTTTTCAATTGTTTCTTTTTCCGTAAGTTGGCTAACTTA 1097
Query 1078 GACAAAGGTACACCTAGCACGTGTGGAGGAAGGGAAGCATACCAACGTGTGCAGAAGTGG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GACAAAGGTACACCTAGCACGTGTGGAGGAAGGGAAGCATACCAACGTGTGCAGAAGTGG 1157
Query 1138 ACTAAGAATGTGGATCTTTTTGAAAAAGATTATATATTTATTCCTATAAACTGCAGTTTT 1197
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 ACTAAGAATGTGGAACTTTTTGAAAAAGATTATATATTTATTCCTATAAACTGCAGTTTT 1217
Query 1198 CACTGGAGTCTGGTTATCATCTGTCATCCCGGTGAATTGGTTCCTTCTCATGT 1250
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CACTGGAGTCTGATTATCATCTGTCATCCCGGTGAATTGGTTCCTTCTCATGT 1270
Score = 1592 bits (862), Expect = 0.0
Identities = 1018/1091 (93%), Gaps = 19/1091 (2%)
Strand=Plus/Plus
Query 1276 GTCGAAAACCCACAAAGGGTTCCCTGCATCTTGCATCTGGACTCAATTAAAGGAAGCCAC 1335
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GTCGAAAACCCAAAAAGGGTTCCCTGCATCTTGCATCTGGACTCAATTAAAGGAAGCCAC 1328
Query 1336 AAAGGTGGTCTTATAAACATTTTTCCGAGTTACCTACGTGAAGAGTGGAAAGCGAGGCAT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAAGGTGGTCTTATAAACATTTTTCCGAGTTACCTACGTGAAGAGTGGAAAGCGAGGCAT 1388
Query 1396 GAAAACACAACAA-ATGATTCCTCAAGAGCTCCAAATATGCAGTCCATCTCACTTGAGCT 1454
| ||||||||||| | |||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 1389 GGAAACACAACAATA-GATTCCCCAAGAGCTCCAGATATGCTGTCCATCTCACTTGAGCT 1447
Query 1455 CCCGCAGCAAGAGAATTCTTTTGACTGTGGCCTCTTTTTGCTCCACTATTTGGATCTTTT 1514
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1448 CCCGCAGCAAGAGAATTCATTTGACTGTGGCCTCTTTTTGCTCCACTATCTGGATCTTTT 1507
Query 1515 TGTGGCTCAAGCTCCTGCTAAATTCAATCCATCCCTCATCTCAAGATCGGCAAATTTTCT 1574
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct 1508 TGTGGCTCAAGCTCCTGCTAAATTTAACCCATCCCTCATCACAAGATCGGCAAATTTTCT 1567
Query 1575 AACTAGGAATTGGTTTCCTGC-AAAGGAAGCTTCACTTAAGCGTAGAAACATCTTAGAAT 1633
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||
Sbjct 1568 AACTAGGAATTGGTTTCCTGCGAAAG-AAGCTTCACTTAAGCGTAGATACATCTTAGAAT 1626
Query 1634 TGCTTTACAACCTCCACAAAGGTCATGATCCAAGTATTCTTCCAGCTAATTCCAAAAGTG 1693
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TGCTTTACAATCTCCACAAAGGTCATGATCCAAGTATTCTTCCAGCTAATTCCAAAAGTG 1686
Query 1694 AACCACCTCATTGTGGAGTTTCCAACAGGAATGATCAAGAAACTGAAAGTGAGAATGTGA 1753
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1687 AACCACCTCATTGTGGAGTTTCCAACAAGAATGATCAAGAAAGTGAAAGTGAGAATGTGA 1746
Query 1754 TTGAGTGCTGTAACTGGATAAAACCATTTGATGGTTCCTCATCAACCGTTACAGACATTT 1813
||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1747 TTGAGAGCTGTAACTGGAGAAAACCATTTGATTGTTCCTCGTCAACCGTTACAGACATTC 1806
Query 1814 CCCAAACGAAGACTTGCTCGCCGGATCTGATTCTTAGCAAAGAAG-TTTCTTACAGC-GG 1871
||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| || ||
Sbjct 1807 CCCAAACAAAGACTTGCTCGCCAGATCTGATTCTTAGCAAAGAAACTTT-TTAC-GCAGG 1864
Query 1872 AGGTTATGACCCTCCGTCTTCTAAGCTCCGAAAGGTCTTCATGTCACCTATTGTGGAAGA 1931
|||||||||||||| ||| ||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1865 AGGTTATGACCCTCAGTCATCTAAGCTCCGAAAGATCTTTATGTCGCCTATTGTGGAAGA 1924
Query 1932 AGTGCAAGAAAGTTGTGAGAAAAAGGACCATTTGGAAATGGACATACAGAAATCCACTGG 1991
||||||||||||| |||||||||| || || ||| ||||||||||||| |||| |||||
Sbjct 1925 AGTGCAAGAAAGTGGTGAGAAAAAAAACGATATGGCAATGGACATACAGGAATCTACTGG 1984
Query 1992 TCATGAGATAGAAACATTGCGAAAA-GAGGGATGCATGCTTTATATTGAGGACAGTGATG 2050
||| |||||||| ||||||| |||| |||| |||| ||||||||||||||||||||||||
Sbjct 1985 TCACGAGATAGAGACATTGC-AAAATGAGGAATGCCTGCTTTATATTGAGGACAGTGATG 2043
Query 2051 ATGAAGAAGCTGTTTCAGTAGAATACGTCTCTGATTCTCAAGATTCATATGAAGTTGAGA 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 ATGAAGAAGCTGTTTCAGTAGAATACGTCTCTGATTCTCAAGATTCATATGAAGTTGAGA 2103
Query 2111 TGAAAGTAGAAGATGATGATGACGATGAGCTTATAGTTACTGGAGAATCTTCAGGGATTC 2170
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2104 TGAAAGGAGAAGATGATGATGACGATGAGCTTATAGTTACTGGAGAATCCGCAGGGACTC 2163
Query 2171 ATGGAAGCAGAGAAATCAAGTCTGATTCAGCATCGATCGAAA--G-AGTGAACAAAAGTA 2227
|| ||||||||||||||||||||||||| | ||||||||||| | ||||||||| ||||
Sbjct 2164 ATAGAAGCAGAGAAATCAAGTCTGATTCTGTATCGATCGAAAAAGGAGTGAACAAGAGTA 2223
Query 2228 GAGATTCAACTGCTGCCTCTTGTTATAATGACTTTCTTCTTGTGTTATCTGATGATGAGA 2287
|||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2224 GAGATTCAACTGCTGCTTCTTGTTATAATGACCTTCTTCTTGTGTTGTCTGATGATGAGA 2283
Query 2288 GGAGCTCAGACGACAAAGAAAACATCTTAAT-A-A-GTTCAAATGTGATGGCCAA---GC 2341
| |||||||| |||||||||||| ||||||| | | |||||||||| |||||||| ||
Sbjct 2284 GAAGCTCAGAAGACAAAGAAAACTTCTTAATCACAAGTTCAAATGTAATGGCCAAAAAGC 2343
Query 2342 CAAAAACTTGA 2352
|||||||||||
Sbjct 2344 CAAAAACTTGA 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5