BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33625.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491320 jgi|Araly1|491320|fgenesh2_kg.7__753__AT4G33625.1 1273 0.0
> Ahg491320 jgi|Araly1|491320|fgenesh2_kg.7__753__AT4G33625.1
Length=873
Score = 1273 bits (689), Expect = 0.0
Identities = 760/794 (96%), Gaps = 5/794 (1%)
Strand=Plus/Plus
Query 159 TCACCGGGAAATTGGTTTTAGATGGATAGGACTGAGGAAATCGAAGAATCCCCCGCCGGA 218
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 83 TCACCGGGAAATCGGTTTCAGATGGATAGGCCTGAGGAAATCGAAGAATCCCCCGCCGGA 142
Query 219 CCTTCTTCCGGATCCGCGAAATTGAAGCTCGGAAACAGAGCAGATCCTTTCCTTGTTGTT 278
||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 143 CCTTCTTCCGGATCCGCGAAATTGAAGCTCGCAAACAGAACAGACCCTTTCCTTGTTGTT 202
Query 279 TGTAGATGCTTCAGCCTCGTTACCTCTCTCATCGCCATTCTCTGTGTTGTCGTTAACGTT 338
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 203 TGTAGATGCTTCAGCGTTGTTACCTCTCTCATCGCCATTCTCTGTGTTGTCGTTAATGTT 262
Query 339 CTCGCTGCCGTTCGCTCCTTCCGTGACAGCCACGATCTCTTCGATGGAATATTCCGGTGT 398
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 263 CTCGCTGCCGTTCGCTCCTTCCGAGACAGCCACGATCTCTTCGATGGAATATTCCGGTGT 322
Query 399 TATGCTGTGGTGATTGCTTGTTTTGTTGTTCTCGTTGAGACTGAATGGGGTTTCATTCTC 458
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 323 TATGCTGTGGTGATTGCTTGTTTTGTTGTTCTCGTTGAGACAGAATGGGGTTTCATTCTC 382
Query 459 AAATTTTCCAAGGTTCTTGAATACTGGGCTGGTAGAGGAATGCTTCAAATTTTTGTTGCT 518
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 383 AAATTTTCCAAGGTTCTTGAATTCTGGGCTGGTAGAGGAATGCTTCAGATTTTTGTTGCT 442
Query 519 GTGATGACAAGAGCTTTCCCTGACTATATGACTCAAAAGAAGGATCTCCTGCTTCTACAG 578
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 443 GTGATGACAAGAGCTTTCCCTGATTATATGACTCAAAAGAAGGATCTCCTGCTTCTACAG 502
Query 579 AACATCGCAAGCTACTTGCTTCTTGCTTGTGGTGTTATCTATGTCATTTCTGGAGTTCTC 638
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 503 AACATCGCTAGCTACTTGCTTCTTGCTTGTGGTGTTATCTATGTCATTTCAGGAGTTCTC 562
Query 639 TGCATCGGCTTTCTGAAGCGTGCTCGACAGCAAAAGGAAGTTTCAAGAGAACAAGCAGTC 698
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 563 TGCATCGGCTTTCTGAAGCGTGCTCGACAGCAGAAGGAAGTTTCAAGAGAACAAGCCGTC 622
Query 699 AAGGATCTTGAGGAGATAGCCCGACGCAAGGAAGAGTTGGAACAATTGCTCCTGGAGCAT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAGGATCTTGAGGAGATAGCCCGACGCAAGGAAGAGTTGGAACAATTGCTCCTGGAGCAT 682
Query 759 CAGAGTAGAGACGAAGACGTGTGAATGTGAATGGACGACGACATCAGTTTCTTTTTGTAT 818
| ||||||||| || |||||||||||||||||||||||| | || ||||||||||||||
Sbjct 683 CGGAGTAGAGATGACGACGTGTGAATGTGAATGGACGAC-A--TCTGTTTCTTTTTGTAT 739
Query 819 TAAAGCATTGTGTGAGCTCTCGGTTTTCATCCTCCCACTTGGATAATAACAGCAGATTCT 878
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 740 TAAAGGATTGTGTGAGCTCTCTGTTTTCATCCTCCCACTTGGCTAATAACAGCAGATTCC 799
Query 879 TTTGTTTTTTGTCTGTTGAAAAACAAAGCTTTGATACTGGTCGTATAAGAGAC--GAGCA 936
|||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 800 TTTGTTTTTTGTGTGTTGAAAAACTAAGCTTTGATACTTGTCGTATAAGAGACAAGAGCA 859
Query 937 CTATTGAATATAAA 950
||||||||||||||
Sbjct 860 CTATTGAATATAAA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5