BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33650.2
Length=2985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1 4377 0.0
Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2 1879 0.0
> Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1
Length=2902
Score = 4377 bits (2370), Expect = 0.0
Identities = 2636/2762 (95%), Gaps = 28/2762 (1%)
Strand=Plus/Plus
Query 235 AAATCCGATCCAACGATGACTATTGAAGAAGTTTCCGGTGAGACTCCTCCGTCTACGCCT 294
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 AAATCCGATCCATCGATGACTATTGAAGAAGTTTCCGGTGAGACTCCTCCGTCTACGCCT 141
Query 295 CCTTCTTCTTCTACGCCTTCTCCGTCTTCCTCCACCACCAACGCCGCGCCGTTGGGATCC 354
| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 142 -C--CTTCTTCTACGCCACCTCCGTCTTCTTCCACCACCAACGCCGCGCCGTTGGGATCC 198
Query 355 TCTGTGATTCCGATTGTAAACAAGCTACAAGACATATTCGCTCAGCTCGGAAGCCAGTCT 414
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 199 TCCGTGATTCCGATTGTAAATAAGCTACAGGACATATTCGCTCAGCTCGGAAGCCAGTCT 258
Query 415 ACGATCGCGCTTCCTCAGGTTGTTGTTGTTGGAAGCCAAAGCAGTGGCAAGTCTAGCGTC 474
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 259 TCGATCGCGCTTCCTCAGGTTGCTGTTGTTGGAAGCCAGAGCAGTGGCAAGTCTAGCGTC 318
Query 475 CTTGAAGCACTCGTCGGCCGTGACTTTCTCCCTCGTGGTAATGATATCTGCACGCGTCGT 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 319 CTTGAAGCACTCGTCGGCCGTGACTTTCTCCCTCGTGGAAATGATATCTGCACGCGTCGT 378
Query 535 CCTCTTGTTCTCCAGCTCCTCCAGACTAAAAGCCGCGCTAATGGCGGATCCGATGATGAG 594
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 379 CCTCTTGTTCTCCAGCTCGTCCAGACTAAAAGCCGCTCCAATGGCGGATCCGATGATGAG 438
Query 595 TGGGGGGAGTTTCGTCACCTTCCT---GAAACTCGTTTCTATGATTTCTCTGAGATTCGT 651
||||||||||||| |||||||||| || |||||| |||||||||||||||||||||||
Sbjct 439 TGGGGGGAGTTTCTTCACCTTCCTCCAGACACTCGTATCTATGATTTCTCTGAGATTCGT 498
Query 652 CGAGAAATTGAGGCTGAGACGAATAGATTAGTTGGAGAGAACAAAGGTGTAGCAGATACA 711
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 499 CGAGAAATTGAGGCTGAGACGAATAGATTAGCAGGAGAGAACAAAGGTGTAGCAGATAAA 558
Query 712 CAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGAACATCACGCTTGTGGATCTGCCT 771
|||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 559 CAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGGATATCACACTTGTGGATCTCCCT 618
Query 772 GGTATTACCAAGGTGCCAGTTGGTGACCAGCCATCCGACATTGAAGCACGTATAAGAACG 831
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 619 GGTATAACCAAGGTGCCAGTTGGTGACCAGCCAACCGACATTGAAGCACGTATAAGAACG 678
Query 832 ATGATCTTGTCTTACATCAAG-CAAGATACTTGCTTGATATTGGCTGTTACCCCTGCTAA 890
||||||||||||||||||||| | || |||||| |||||||||||||||||||| || ||
Sbjct 679 ATGATCTTGTCTTACATCAAGTC-AGCTACTTGTTTGATATTGGCTGTTACCCCCGCAAA 737
Query 891 TACCGATCTAGCAAACTCTGATGCCCTTCAAATTGCTAGCATTGTAGATCCTGATGGTCA 950
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TACCGATTTAGCAAACTCTGATGCCCTTCAAATTGCTAGCATTGTAGATCCTGATGGTCA 797
Query 951 CAGAACGATAGGTGTAATCACAAAGTTGGATATTATGGACAAAGGTACTGATGCTCGAAA 1010
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 CAGAACGATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTACTGATGCTCGAAA 857
Query 1011 ACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTG 1070
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GCTCCTACTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTG 917
Query 1071 CCAGGAGGATATTTTGCTAAACCGCACAGTCAAGGAAGCACTTCTCGCAGAGGAGAAGTT 1130
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 918 CCAGGAGGATATTTTGCTAAACCGCACAGTCAAGGAAGCACTTGTCGCAGAGGAGAAATT 977
Query 1131 CTTCCGGAGTCACCCGGTTTACCATGGTCTTGCCGATCGTTTGGGTGTTCCTCAGCTAGC 1190
|||||| |||| || ||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 978 CTTCCGTAGTCGTCCTGTTTACCATGGTCTTACCGATCGTTTGGGTATCCCTCAGCTAGC 1037
Query 1191 AAAGAAGTTAAATCAGATCCTTGTTCAACATATCAAGGTCTTGCTTCCGGATTTGAAGTC 1250
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1038 AAAGAAGTTAAATCAGATCCTTGTTCAACATATCAAGGTCCTGCTTCCGGATTTGAAGTC 1097
Query 1251 GCGGATAAGTAATGCTTTGGTTGCTACAGCAAAAGAGCATCAGAGCTATGGTGAATTAAC 1310
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1098 GCGGATAAGTAATGCTTTGGTTGCTACAGCAAAGGAGCATCAGAGCTATGGTGAAATAAC 1157
Query 1311 AGAATCAAGGGCTGGGCAAGGAGCTCTTCTCCTCAACTTTCTCTCCAAATACTGTGAAGC 1370
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1158 AGAATCAAGGGCTGGTCAAGGAGCTCTTCTCCTCAACTTTCTCTCTAAATACTGTGAAGC 1217
Query 1371 ATACTCTTCATTGCTGGAAGGGAAAAGTGAAGAAATGTCTACGTCAGAGCTCTCTGGAGG 1430
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1218 ATACTCTTCATTGCTGGACGGGAAAAGTGAAGAAATGTCTACGTCCGAGCTCTCTGGAGG 1277
Query 1431 AGCAAGAATTCACTATATTTTCCAGTCAATCTTTGTTAAGAGTTTGGAGGAGGTTGATCC 1490
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AGCAAGAATTCATTATATTTTCCAGTCAATCTTTGTTAAGAGTTTGGAGGAGGTTGATCC 1337
Query 1491 ATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAG 1550
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATGCGAAGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAG 1397
Query 1551 ATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTTAGGAGGCAGATATCTCG 1610
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 ATCCGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTTAGGAGGCAGATATCTCG 1457
Query 1611 TTTGTTAGATCCTAGCCTTCAGTGTGCCCGGTTCATTTTTGAAGAGCTAATAAAGATTAG 1670
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1458 TTTGTTAGATCCTAGCCTTCAGTGTGCTAGGTTCATTTTTGATGAGCTAATAAAGATTAG 1517
Query 1671 CCATAGATGTATGATGAATGAGTTACAACGATTTCCAGTCCTACGAAAGCGCATGGATGA 1730
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1518 CCATAGATGTATGATGAATGAGTTACAACGATTCCCAGTCCTGCGAAAGCGCATGGATGA 1577
Query 1731 GGTTATCGGGGATTTCCTGCGAGAAGGTCTTGAACCCTCAGAAGCAATGATCGGGGATAT 1790
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 GGTTATCGGGGATTTCCTGCGAGAAGGTCTTGAACCCTCAGAAGCAATGATTGGGGATAT 1637
Query 1791 CATTGATATGGAGATGGATTACATAAACACTTCACATCCAAATTTTATTGGTGGAACCAA 1850
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1638 CATTGATATGGAGATGGATTACATAAACACTTCTCATCCAAATTTTATTGGTGGAACCAA 1697
Query 1851 GGCCGTGGAAGCTGCAATGCATCAAGTGAAGTCTTCGAGGATTCCCCATCCTGTGGCACG 1910
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GGCCGTGGAAGTTGCAATGCAACAAGTGAAGTCTTCGAGGATTCCCCATCCTGTGGCACG 1757
Query 1911 ACCAAAGCAGGACACTGTGGAGCCTGATAGAACATCTTCTTCCACGAGTCAAGTGAAATC 1970
||| || ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1758 ACC-AA--AGGACACCGTGGAGCCTGATAGAACATCTTCTTCCGCGAGTCAGGTGAAATC 1814
Query 1971 TAGATCGTTTCTCGGCAGGCAAGCTAATGGAATTGTTACTGATCAGGGAGTTGTATCTGC 2030
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 TAGATCTTTTCTCGGCAGGCAAGCTAATGGAATTGTTACTGATCAGGGAGTTGTATCTGC 1874
Query 2031 AGATGCTGAAAAAGCT-CAACCTGCTGCAAATGCGAGTGATACAAGGTGGGGTATCCCTT 2089
|||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1875 AGATGCTGAAAAAGCTGC-ACCAGCTGCAAATGCGAGTGATACAAGATGGGGTATCCCTT 1933
Query 2090 CAATTTTCCGAGGGGGTGATACTAGAGCAGTTACTAAAGATAGCTTATTAAACAAACCAT 2149
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1934 CAATTTTCCGAGGGGGTGATACTCGAGCAGTTACTAAAGATAGCTTATTAAACAAACCAT 1993
Query 2150 TCAGTGAAGCTGTTGAGGATATGTCTCACAACTTATCCATGATCTATCTAAAGGAGCCCC 2209
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1994 TCAGTGAAGCTGTTGAGGATATGTCTCACAACCTATCGATGATCTATCTAAAGGAGCCCC 2053
Query 2210 CAGCTGTCTTGAGGCCAACCGAAACCCATTCAGAACAGGAAGCAGTTGAGATTCAGATAA 2269
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 CAGCTGTCTTGAGGCCATCCGAAACCCATTCAGAACAGGAAGCAGTTGAGATTCAGATAA 2113
Query 2270 CAAAGCTGTTACTAAGATCATACTATGACATTGTAAGGAAGAATATTGAGGACTCGGTAC 2329
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 CAAAGCTGTTACTAAAATCATACTATGACATTGTAAGGAAGAATATTGAGGACTCGGTAC 2173
Query 2330 CAAAAGCAATCATGCATTTCCTGGTAAACCACACAAAACGTGAGCTGCATAACGTCTTCA 2389
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2174 CAAAAGCAATCATGCATTTCCTGGTAAACCACACGAAACGTGAGCTGCATAACGTCTTCA 2233
Query 2390 TCAAGAAGCTTTACAGGGAGAACTTGTTTGAAGAAATGTTGCAAGAGCCAGATGAGATAG 2449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 TCAAGAAGCTTTACAGGGAGAACTTGTTTGAAGAAATGTTGCAAGAGCCAGATGAGATAG 2293
Query 2450 CAGTTAAGAGGAAACGCACACAAGAGACTCTCCACGTTCTTCAGCAAGCTTACAGGACAC 2509
|||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||
Sbjct 2294 CAGTTAAGAGGAAACGAACGCAGGAGACTCTTCACGTTCTTCAGCAAGCTTACAGGACAC 2353
Query 2510 TAGATGAGTTGCCACTGGAAGCAGATTCGGTGTCAGCAGGAATGTCAAAACATCAGGAGT 2569
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354 TAGATGAGCTGCCACTGGAAGCAGATTCGGTGTCAGCAGGAATGTCAAAACATCAGGAGT 2413
Query 2570 TACTGACATCTTCAAAGTATTCGACAAGCAGCTCATACTCGGCATCTCCAAGTACGACAA 2629
|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 2414 TACTGACATCCTCAAAGTATTCCACAAGCAGCTCATACTCAGCATCACCAAGTACAACAA 2473
Query 2630 GAAGATCGAGAAGAGCAGGAGATCAACACCAAAATGGATACGGATTCTAACATGATCCAA 2689
||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2474 GAAGATCAAGAAGAGGAGGAGATCAACACCAAAATGGATACGGATTCTAACGTGATCCAA 2533
Query 2690 ATATCTCGAATATCTCTCGACTGTGATAACGCATTTCATTCATTTAATGGCTCTTTCAGG 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2534 ATATCTCGAATATCTCTCGACTGTGATAACGCATTTCATTCATTTAATGGCTCTTTCAGG 2593
Query 2750 TTTTGGTATTAAATTATGTGTTGGTCATATGAAGAATTTATATAGGAAACCAGTACACAG 2809
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 2594 TTTTGGTATTAAATTATGTGTTGGTCAAATGAAGAAGTTATATAGGAAACCGGTACACAG 2653
Query 2810 TGTGGGTTTTGGTCCTTTTGGACTCTGCATTGGTTGACTTGATAAGGGAGTGAAAGGTGA 2869
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2654 TGTGGGTTTTGGTCCTTTTGGACTCTGCATTGGTTGACT-GATAAGGGAGTGAAAGGTGA 2712
Query 2870 TATAGtttttttttCCAATTTGTTTCAAATGCTCCCCC-----TGCAACAATAACGGGAA 2924
|||||| ||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2713 TATAGTGTTT----CCAGTTTGTTTCAAATGCTCCCCCCCCCCTGCAACAATAACGGGAA 2768
Query 2925 GCAAACACCTTTCACTCTAAAtttttttttGGGGAATGTTTAA-TCAATAAGTTATATTA 2983
|||||| | ||||||||| | || |||| ||| |||| |||| | ||||||||||||||
Sbjct 2769 GCAAACTCTTTTCACTCTTA-TTATTTT--GGG-AATGGTTAAATTAATAAGTTATATTA 2824
Query 2984 CA 2985
||
Sbjct 2825 CA 2826
> Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2
Length=2735
Score = 1879 bits (1017), Expect = 0.0
Identities = 1836/2222 (83%), Gaps = 93/2222 (4%)
Strand=Plus/Plus
Query 352 TCCTCTGTGATTCCGATTGTAAACAAGCTACAAGACATATTCGCTCAGCTCGGAAGCCAG 411
||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 149 TCCTCCGTGATTCCAATTGTTAACAAGCTTCAAGACATATTCGCTCAGCTAGGAAGCCAA 208
Query 412 TCTACGATCGCGCTTCCTCAGGTTGTTGTTGTTGGAAGCCAAAGCAGTGGCAAGTCTAGC 471
|| |||||||||||||| || || | ||| || ||||| |||||||||||||| || |||
Sbjct 209 TCGACGATCGCGCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAATCCAGC 268
Query 472 GTCCTTGAAGCACTCGTCGGCCGTGACTTTCTCCCTCGTGGTAATGATATCTGCACGCGT 531
|| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 269 GTTCTCGAAGCACTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATCTGCACGCGC 328
Query 532 CGTCCTCT-TGTTCTCCAGCTCCTCCAGACTAAAAGCCGCGCT--AATGGCGGATCCGAT 588
|| ||||| | ||||||||| | ||||| ||| || |||| |||| |||||||||
Sbjct 329 CGACCTCTCCG-TCTCCAGCTTGTTCAGAC-GAAA-CCTCGCTCCGATGGTGGATCCGAT 385
Query 589 GATGAGTGGGGGGAGTTTCGTCA-C-C-TTCCTG--AAACTCGTTTCTATGATTTCTCTG 643
|| |||||||| ||||||| ||| | | ||||| ||| ||| |||| ||||||||||
Sbjct 386 GAAGAGTGGGGAGAGTTTCTTCACCACGATCCTGTTAAA--CGTATCTACGATTTCTCTG 443
Query 644 AGATTCGTCGAGAAATTGAGGCTGAGACGAATAGATTAGT-TGGAGAGAACAAAGGTGTA 702
|||||||||| || |||||||| ||||| |||||| || | ||||||||||||||||||
Sbjct 444 AGATTCGTCGTGAGATTGAGGCGGAGACTAATAGAGTA-TCAGGAGAGAACAAAGGTGTA 502
Query 703 GCAGATACACAGATTCGTCTT-AAAAT-TTCTTCACCTAATGTATTGAACATCACG-CTT 759
|||||| | |||| || || ||||| || |||||||||||| ||| | |||| | |||
Sbjct 503 TCAGATATTCCGATTGGT-TTGAAAATATT-TTCACCTAATGTTTTGGATATCA-GTCTT 559
Query 760 GTGGATCTGCCTGGTATTACCAAGGTGCCAGTTGGTGACCAGCCATCCGACATTGAAGCA 819
|||||||| |||||||| || ||||| || |||||||| |||||| | ||||| |||||
Sbjct 560 GTGGATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAACTGACATCGAAGCG 619
Query 820 CGTATAAGAACGATGATCTTGTCTTACATCAAGCAAGATA-CTTGCTTGATA-TTGGCTG 877
||||||||||||||||||||| ||||||| ||| || || | ||||||||| || ||||
Sbjct 620 CGTATAAGAACGATGATCTTGACTTACATTAAGGAATCTAGC-TGCTTGATACTT-GCTG 677
Query 878 TTACCCCTGCTAATACCGATCTAGCAAACTCTGATGCCCTT-CAAATTGCTA-GCATTG- 934
|||||||||||||||||||| ||||||| || |||| | || ||||| || | | | ||
Sbjct 678 TTACCCCTGCTAATACCGATTTAGCAAATTCAGATG-CATTACAAATCGC-AGGAAATGC 735
Query 935 TAGATCCTGATGGTCACAGAACGATAGGTGTAATCACAAAGTTGGATATTATGGACAAAG 994
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 736 T-GATCCTGATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAG 794
Query 995 GTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGG 1054
||||||||||||| || | |||||||||||| | ||||||||||||||||||||||
Sbjct 795 GTACTGATGCTCGGAATCACCTTCTTGGAAAAACAATACCTCTTCGACTTGGATACGTGG 854
Query 1055 GAGTTGTAAATCGTTGCCAGGAGGATATTTTGCTAAACCGCA-CAGTCAAGGAAGCACTT 1113
|||||||||||||| | || |||||||||||| | ||||| | || ||||||| || |||
Sbjct 855 GAGTTGTAAATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCA-TCAAGGATGCTCTT 913
Query 1114 CTCGCAGAGGAGAAGTTCTTCCGGAGTCACCCGGTTTACCAT-GGTCTTGCCGATCGTTT 1172
| |||||||| |||||||| | |||| || | |||| | ||||| | ||||||||
Sbjct 914 ATTGCAGAGGAAAAGTTCTTTCTTAGTCGTCCAGCTTAC-AGCGGTCTCACAGATCGTTT 972
Query 1173 GGGTGTTCCTCAGCTAGCAAAGAAGTTAAATCAGATCCTTGTTCAACATATCAAGGT-CT 1231
|||||| ||||| | |||||||| ||||||||| ||||||| ||||| ||||||| ||
Sbjct 973 GGGTGTCCCTCAATTGGCAAAGAAATTAAATCAGGTCCTTGTCCAACACATCAAGGCACT 1032
Query 1232 TGCTTCCGGATTTGAAGTCGCGGAT-AAGTAATGCTTTGGTTGCTACAGCAAAAGAGCAT 1290
|||||| |||| ||||| | || || ||||| ||| ||||||||||||| ||| ||
Sbjct 1033 -GCTTCCTAATTTAAAGTCACATATCAAC-AATGCATTGTTTGCTACAGCAAAGGAGTAT 1090
Query 1291 CAGAGCTATGGTGA-ATTAACAGAATCAAGGGCTGGGCAAGGAGCTCTTCTCCTCAACTT 1349
|||||||||| || || |||||| || |||| ||| ||||||||||||||||||| ||
Sbjct 1091 GAGAGCTATGGGGATAT-AACAGAGTCCAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTT 1149
Query 1350 TCTCTCCAAA-TACTGTGAAGCATACTCTTCATTGCTGGAAGGGAAAAGTGAAGAAATGT 1408
| | | |||| ||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1150 TAT-TACAAAATACTGTGAAGCATACTCCTCAACCCTGGAAGGGAAAAGTAAAGAAATGT 1208
Query 1409 CTACGTCAGAGCTCTCTGGAGGAGCAAGAATTCACTATAT-TTTCCAGTCAATCTTTGTT 1467
| || || |||||||| || ||||||||||||| ||| || |||| | ||| ||||||||
Sbjct 1209 CAACATCTGAGCTCTCGGGTGGAGCAAGAATTCTCTACATCTTTCAA-TCAGTCTTTGTT 1267
Query 1468 AAGAGTTTGGAGGAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCA 1527
||||| || |||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 1268 AAGAGCTTAGAGGAGGTTGATCCATGCGAAGACTTAACAGCTGATGATATTCGGACTGCA 1327
Query 1528 ATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTT 1587
|| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1328 ATACAAAATGCAACTGGTCCCAGATCTGCAATATTTGTTCCAGATGTTCCATTTGAAGTT 1387
Query 1588 CTTGTTAGGAGGCAGATATCTCGTTTGTTAGATCCTAGCCTTCAGTGTGCCCGGTTCATT 1647
||||| |||||||| ||||||||||| ||||||| ||||||||||| || |||||||
Sbjct 1388 CTTGTCAGGAGGCAAATATCTCGTTTACTAGATCCCAGCCTTCAGTGCGCTAGGTTCATC 1447
Query 1648 TTTGAAGAGCTAATAAAGATTAGCCAT-AGATGTATGATGA-ATGAGTTACAACGATTTC 1705
||||| |||||| |||||||||| ||| || |||||||||| | |||||||| || || |
Sbjct 1448 TTTGATGAGCTAGTAAAGATTAGTCATCAG-TGTATGATGACA-GAGTTACAGCGCTTCC 1505
Query 1706 CAGTCCTACGAAAGCGCATGGATGAGGTTATCGGGGA-TTTCCTGCGAGAAGGTCTTGAA 1764
||||||| | ||||||||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 1506 CAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTC-TGCGAGAAGGTCTTGAA 1564
Query 1765 CCCTCAGAAGCAATGATCGGGGATATCATTGATATGGAGATGGATTACATAAACACTTCA 1824
|| ||| | ||||||||| | ||| | ||||| ||||||||||||||||||||||| |||
Sbjct 1565 CCTTCACAGGCAATGATCCGAGATCTTATTGAAATGGAGATGGATTACATAAACACCTCA 1624
Query 1825 CATCCAAATTTTATTGGTGGAACCAAGGCCGTGGAAGCT-GCAATGCATCAAGTGAAGTC 1883
|| ||||||||||| || |||||||| |||||||| ||| |||||||| | ||| || ||
Sbjct 1625 CACCCAAATTTTATCGGGGGAACCAAAGCCGTGGA-GCTTGCAATGCAACTAGTTAAATC 1683
Query 1884 TTCGAGGATTCCCCATCCTGTGGCACGACCAAAGCAGGACACTGTGGAGCCTGATA-GAA 1942
||| |||||||| |||||||| || || |||| | | ||||||||||||||| | ||
Sbjct 1684 TTCAAGGATTCCGCATCCTGTTGCGCGGCCAA-GT-G-ACACTGTGGAGCCTGCGAAGA- 1739
Query 1943 CATCTTCTTCCACGAGTCAAGTGAAATCTAGATCGTTTCTCGGCAGGCAAGCTAATGGAA 2002
|| |||||| |||||||| | ||| | |||| ||||||||| | |||||||||||||
Sbjct 1740 CAACTTCTTTTGCGAGTCAAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGGAA 1799
Query 2003 TTGTTACTGATC-AGGGAGTTGTATCTGCAGATGCTGAAAAAGCT-CAACCTGCTGCAAA 2060
| | | | || | | | | | ||||||||||||| | || || || |||| |||
Sbjct 1800 TCGG-AGT--TCCA---ACT-GCA---GCAGATGCTGAAAGATCTGCA-CCAGCTGGAAA 1848
Query 2061 -TGCGAGTGATACAAGGTGGGGTATCCCTTCAATTTTCCGAGGGGG-TGATACT-AGAGC 2117
| | || || | | ||| | || | ||||||||||| |||| |||| | || ||
Sbjct 1849 CT-CAAG--ATGGA-G-TGGT-T-TCTCATCAATTTTCCG-GGGGAATGATGGTCAG-GC 1899
Query 2118 AGTTACT-AAAGATAGCTTATTAAACAAACCATTCAGTGAAGCTGTTGAGGATATGTCTC 2176
|| | || ||| ||||| || |||||||||| ||||| ||||||| | | ||| ||| ||
Sbjct 1900 AGCTGCTGAAA-ATAGCCTACTAAACAAACCGTTCAGCGAAGCTGCTCAAGATGTGTATC 1958
Query 2177 ACAACTTATCCATGATCTATCTAAAGGAGCCCCCAGCTGTCTTGAGGCCAACCGAAACCC 2236
| ||||| || | |||||| |||||||||| ||| | | ||||| || | ||||| |
Sbjct 1959 AGAACTTGTCAACAATCTATTTAAAGGAGCCTCCAACCATTTTGAGATCATCGGAAACTC 2018
Query 2237 ATTCAGAACAGGAAGCAGTTGAGATTCAGATAACAAAGCTGTTACT-AAGATCATACTAT 2295
||||||||||||| |||||||||||||||||||||||||| ||| | || ||| ||||||
Sbjct 2019 ATTCAGAACAGGAGGCAGTTGAGATTCAGATAACAAAGCTATTATTGAA-ATCCTACTAT 2077
Query 2296 GACATTGTAAGGAAGAATATTGAGGACTCGGTACCAAAAGCAATCATGCATTTCCTGGTA 2355
|||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| ||||||
Sbjct 2078 GACATTGTAAGGAAGAATGTTGAGGACTTGGTCCCAAAAACAATCATGCATTTTCTGGTA 2137
Query 2356 AACCACACAAAACGTGAGCTGCATAACGTCTTCATCAAGAAGCTTTACAGGGAGAACTTG 2415
|| |||| |||||||||||||| || || |||||| |||||||||||||||||||||||
Sbjct 2138 AATTACACGAAACGTGAGCTGCACAATGTTTTCATCGAGAAGCTTTACAGGGAGAACTTG 2197
Query 2416 TTTGAAGAAATGTTGCAAGAGCCAGATGAGATAGCAGTTAA-GAGGAAACGCACACAAGA 2474
|||||||| || || |||||||||||||| |||| | ||| |||||||||||| | ||
Sbjct 2198 ATTGAAGAACTGCTGAAAGAGCCAGATGAGTTAGC-GATAAAGAGGAAACGCACGCTGGA 2256
Query 2475 GACTCTCCACGTTCTTCAGCAAGCTTA-CAGGACACTAGATGAGTTGCCACT-GGAAGCA 2532
|||||| | | |||||||||| ||| | | ||||| |||| ||| |||| || |||||||
Sbjct 2257 GACTCTTCGCATTCTTCAGCAGGCTAATC-GGACATTAGACGAGCTGCC-CTTGGAAGCA 2314
Query 2533 GA 2534
||
Sbjct 2315 GA 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112709034955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5