BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33660.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491314 jgi|Araly1|491314|fgenesh2_kg.7__747__AT4G33660.1          418    2e-116


> Ahg491314 jgi|Araly1|491314|fgenesh2_kg.7__747__AT4G33660.1
Length=446

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 277/300 (92%), Gaps = 10/300 (3%)
 Strand=Plus/Plus

Query  71   TTTCTATTCAAAAACTTTAGTTTTGAGt-tttttttttCTTG--TATACTTCTC--CCCA  125
            |||||||||||||||| |||| |||| | ||||||||| |||  || | |||||   |||
Sbjct  31   TTTCTATTCAAAAACTATAGTGTTGAATCTTTTTTTTT-TTGCTTA-AATTCTCTGGCCA  88

Query  126  AAATATGAGCGATCCCAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG  185
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  89   AAATATGAGCGATCCGAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG  148

Query  186  TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTAtcctccaccaccgccaccgcctcc  245
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  149  TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTACCCTCCACCACCGCCACCGCCGCC  208

Query  246  tcctccaccaccaccacGAAAAGTTGGTTTTCTTGAAGGACTATTAGCAGCTCTGTGTTG  305
            ||| ||||||| | |  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  209  TCCACCACCAC-AGC--GAAAAGTTGGTTTTCTTGAAGGACTATTAGCGGCTCTGTGTTG  265

Query  306  TTGCTGCTTGGTGGATGAATGTTGCTGTGACCCGACCATTATATGCTTTGATTAAGTTTT  365
            ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  266  TTGCTGCTTGGTGGATGAATGTTGCTGCGACCCGACCATTATATGCATTGATTAAGTTTT  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5