BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33670.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491313 jgi|Araly1|491313|fgenesh2_kg.7__746__AT4G33670.1 1790 0.0
Ahg914989 jgi|Araly1|914989|Al_scaffold_0001_5243 209 3e-53
> Ahg491313 jgi|Araly1|491313|fgenesh2_kg.7__746__AT4G33670.1
Length=1149
Score = 1790 bits (969), Expect = 0.0
Identities = 1073/1123 (96%), Gaps = 8/1123 (1%)
Strand=Plus/Plus
Query 104 ATCCTATCAACAATGACGAAAATAGAGCTTCGAGCTTTGGGGAACACAGGGCTTAAGGTT 163
||||| || |||||||||||||| ||||||||| ||||||| ||||| || ||||||||
Sbjct 31 ATCCTTTCCACAATGACGAAAATGGAGCTTCGACCTTTGGGTAACACTGGACTTAAGGTA 90
Query 164 AGCGCCGTTGGTTTTGGTGCCTCTCCGCTCGGAAGTGTCTTCGGTCCAGTCGCCGAAGAT 223
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 91 AGCGCCGTTGGTTTCGGTGCCTCGCCGCTCGGAAGTGTCTTCGGTCCAGTCGCCGAAGAT 150
Query 224 GATGCCGTCGCCACCGTGCGCGAGGCTTTCCGTCTCGGTATCAACTTCTTCGACACCTCC 283
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 GATGCCGTCGCCACCATGCGCGAGGCTTTCCGTCTCGGTATCAACTTCTTCGACACCTCC 210
Query 284 CCGTATTATGGAGGAACACTGTCTGAGAAAATGCTTGGTAAGGGACTAAAGGCTTTGCAA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CCGTATTATGGAGGAACACTGTCTGAGAAAATGCTTGGTAAGGGACTAAAGGCTTTGCAA 270
Query 344 GTCCCTAGAAGTGACTACATTGTGGCTACTAAGTGTGGTAGATATAAAGAAGGTTTTGAT 403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 271 GTCCCTAGAAGTGACTACATTGTGGCGACTAAGTGTGGTAGATATAAAGAAGGTTTTGAT 330
Query 404 TTCAGTGCTGAGAGAGTAAGAAAGAGTATTGACGAGAGCTTGGAGAGGCTTCAGCTTGAT 463
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 331 TTCAGTGCTGAGAGAGTAAGAAAGAGTATCGACGAGAGCTTGGAGAGGCTTCAGCTTGAT 390
Query 464 TATGTTGACATACTTCATTGCCATGACATTGAGTTCGGGTCTCTTGATCAGATTGTGAGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TATGTTGACATACTTCATTGCCATGACATTGAGTTCGGGTCTCTTGATCAGATTGTGAGT 450
Query 524 GAAACAATTCCTGCTCTTCAGAAACTGAAACAAGAGGGGAAGACCCGGTTCATTGGTATC 583
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 451 GAAACAATTCCTGCTCTTCAGAAACTGAAACAGGAGGGGAAGACCAGGTTCATTGGTATC 510
Query 584 ACTGGTCTTCCGTTAGATATTTTCACTTATGTTCTTGATCGAGTGCCTCCAGGGACTGTC 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 511 ACTGGTCTTCCGTTAGATATTTTCACTTATGTTCTTGATCGAGTGCCTCCAGGGACAGTC 570
Query 644 GATGTGATATTGTCATACTGTCATTACGGCGTTAATGATTCGACGTTGCTGGATTTACTA 703
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 571 GATGTGATATTATCATACTGTCATTACGGCGTTAATGATTCGACGTTGCTGGATTTGCTA 630
Query 704 CCTTACTTGAAGAGCAAAGGTGTGGGTGTGATAAGTGCTTCTCCATTAGCAATGGGCCTC 763
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 631 CCTTACTTGAAGAGCAAAGGTGTGGGTGTGATAAGTGCGTCCCCATTGGCAATGGGTCTC 690
Query 764 CTTACAGAACAAGGTCCTCCTGAATGGCACCCTGCTTCCCCTGAGCTCAAGTCTGCAAGC 823
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 691 CTTACAGAACAAGGTCCTCCTGAATGGCACCCCGCTTCCCCTGAGCTCAAGACTGCATGC 750
Query 824 AAAGCCGCAGTTGCTCACTGCAAATCAAAGGGCAAGAAGATCACAAAGTTAGCTCTGCAA 883
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 751 AAAGCCGCAGTTTCTCACTGCAAATCAAAGGGTAAGAAGATCACAAAGTTAGCTCTGCAA 810
Query 884 TACAGTTTAGCAAACAAGGAGATTTCGTCGGTGTTGGTTGGGATGAGCTCTGTCTCACAG 943
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 811 TACAGTTTAGCAAACAAGGAGATTTCATCAGTGTTGGTTGGGATGAGCTCTGTCTCGCAG 870
Query 944 GTAGAAGAAAATGTTGCAGCAGTTACAGAGCTTGAAAGTCTGGGGATGGATCAAGAAACT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GTAGAAGAAAATGTTGCAGCAGTTACAGAGCTTGAAAGTCTGGGGATGGATCAAGAAACT 930
Query 1004 CTGTCTGAGGTTGAAGCTATTCTCGAGCCTGTAAAGAATCTGACATGGCCAAGTGGAATC 1063
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 931 CTGTCTGAGGTTGAAGCTATTTTAGAGCCTGTAAAGAATCTGACATGGCCAAGTGGAATC 990
Query 1064 CATCAGAACTAAAAGAAGCTCTTTGTGTTTCTGGTAAACTCTTGTCTTGCTTCTTGTAAT 1123
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 991 CATCAGAACTAAAA-AAGCTCTTTGTGTTTCTGGGAAACTCTTGTCATGCTTCTTGTAAT 1049
Query 1124 GCTTATGCATTCGTTGTTGTGTCATTGTGTTAATA-A---GAGTGTAAGTTTGGTTGGTA 1179
| || | ||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 1050 GTTTCGGTATTCGTTGT-GT--CATTGTGTTAATATATAAGAGTGTAAGTTTGGTTGGTA 1106
Query 1180 TGATTAATAAAGTTTCTTAGATATCAAAATCAGTCGGAACATC 1222
||||||||||| |||||||||||||||||| | || |||||||
Sbjct 1107 TGATTAATAAAATTTCTTAGATATCAAAATTAATCTGAACATC 1149
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 52 ACAAGTGTTGTCTTCTCGCGTCTCTCATCAA 82
|||||||||||||||||||||||||||||||
Sbjct 1 ACAAGTGTTGTCTTCTCGCGTCTCTCATCAA 31
> Ahg914989 jgi|Araly1|914989|Al_scaffold_0001_5243
Length=237
Score = 209 bits (113), Expect = 3e-53
Identities = 127/134 (95%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 813 AGTCTGCAAGCAAAGCCGCAGTTGCTCACTGCAAATCAAAGGGCAAGAAGATCACAAAGT 872
|||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 80 AGTCTGCATGCAAAGCCGCAGTTGTTCACTGCAAATCAAAGGGTAAGAAAATCACAAAGT 139
Query 873 TAGCTCTGCAATACAGTTTAGCAAACAAGGAGATTTCGTCGGTGTTGGTTGGGATGAGCT 932
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 140 TAGCTCTGCAATACAGTTTAGTAAACAAGGAGATTTCATCGGTGTTGATTGGGATGAGCT 199
Query 933 CTGTCTCACAGGTA 946
||||||||||||||
Sbjct 200 CTGTCTCACAGGTA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5