BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33690.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491311 jgi|Araly1|491311|fgenesh2_kg.7__744__AT4G33690.1 1291 0.0
> Ahg491311 jgi|Araly1|491311|fgenesh2_kg.7__744__AT4G33690.1
Length=916
Score = 1291 bits (699), Expect = 0.0
Identities = 842/907 (93%), Gaps = 26/907 (3%)
Strand=Plus/Plus
Query 67 CGATTTCGTGAAGCTGCTACTAGATATCTG-TATCTGAGTCAATTCGATTTCGTGATGGA 125
||||| |||||||||||||| | | || ||||||| |||||||||||||||||||||
Sbjct 26 CGATTCCGTGAAGCTGCTAC----T-T-TGATATCTGATTCAATTCGATTTCGTGATGGA 79
Query 126 TCTGGAAACTGAAAATCGAATAGCTTCCATTCTTTTAAGAGAAGCAGCAGAATTGAGGAG 185
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 80 TCTGGAAACTGAAAATCGAATAGCTTCGATTCTTTTAAGAGAAGCAGCAGAATTGAGGAG 139
Query 186 ACAAGCTGAGAAAGATGGCGTCAGAGCATATCTTGAGAAGCCTAATGTAAGGCATCGACC 245
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 140 ACAAGCTGAGAAAGAAGGCGTCAGAGCATATCTTGAGAAGCCTAATGTAAGACATCGACC 199
Query 246 TAACTCTAGATTTCTCACTGCTACAGTTCTTGGTGTTCAGCAAGCAAACAAAGCTGTGGA 305
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 200 TAACTCTAGATTTCTCACGGCTACTGTGCTTGGTGTTCAGCAAGCAAACAAAGCTGTGGA 259
Query 306 AACCAATGAGATGTGGAGTCTTCGGAGTAAAGAGATTGAGTTTGGTGAAAGGCTCAAAAG 365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 260 AACCAATGAGATGTGGAGTCTTCGGAGTAAAGAGATTGAGTTTGATGAAAGGCTCAAAAG 319
Query 366 AAAATCAAGAGATGAGAGCAGCAATGGTCAAAGTGAGCAGAACAATAGGAGGGATTTT-T 424
|||||||||||| |||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 320 AAAATCAAGAGAAGAGAGCAGCAGTTGCCAAAGTGAGCAGAACAATAGGAGGGATTTTCT 379
Query 425 TAAAGAGATGTACTTCAGTTGATGAGAATGTTACTACTACTAGTTTATCACCATCATCAA 484
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 380 T-AAGAGATGTACTTCAGTTGATGAGAATGTTACTACTACTAGTTTATCACCCTCATCAA 438
Query 485 GCCGGAGCAGAAGCAAAAGATGGCAATCAGAGGATGATGATGATGAAGGCTTAGGAGATG 544
|||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 439 GCCGGAGCAGAAACAAAAGATGGCAATCAGA--A-GACGATGATGAAGGCTTAGGAGATG 495
Query 545 TCGAGGTTAAGACTTTTCTCCAATCAAGGGTCAAGCGTGGCAGAGGTTCTGTTGGTGCTA 604
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 496 TCAAGGTTAAGACTTTTCTCCAATCAAGGGTCAAGCGTGGCAGAGGCTCTGTTGGTGCTA 555
Query 605 TGATGGATGAACCGCTACCCTGTCTTCCTGAGAGGGAATTGTCAAGAACTTCTGATACAG 664
|||||||||||| ||||||||||||||| || |||| ||||||||| |||||||||||
Sbjct 556 GGATGGATGAACCATTACCCTGTCTTCCTGTGAAGGAACTGTCAAGAAATTCTGATACAG 615
Query 665 GAGATCGGAAGCTAGTGATTCAGCCAGAGCGATCACCTTTATTGAGACGTAGGACAGATT 724
||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||
Sbjct 616 GAGATCGGAAGCTAGTGCTCCAGCCAGATCGATCACCTTTATTGAGACGTGGGACAGATT 675
Query 725 CTTCTTCTTCCGACGAGGAGGAAGTTTACAAACGGGCTCATagaaagagaaaggagcata 784
||||||||||||| ||||| | ||| ||||| | |||||||||||||||||||||||||
Sbjct 676 CTTCTTCTTCCGATGAGGA-G--GTTCACAAATGTGCTCATAGAAAGAGAAAGGAGCATA 732
Query 785 agaagaaac-t--tagtaagaaacacaagtcaaaagagaagaaaagggataggaagaaga 841
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGAAGAAACTTAGTAGTAAGAAACACAAGTCAAAAGAGAAGAAAAGGGATAGGAAGAAGA 792
Query 842 gaaaaTATGGTAGGGACTAGA---TC-TTTCCGGAC-AAAAGTAATTGCCTTTTTACACC 896
|||||||| |||||||||||| || ||||||||| |||| | |||||| ||||||||
Sbjct 793 GAAAATATTGTAGGGACTAGATCTTCTTTTCCGGACAAAAAAT-ATTGCC--TTTACACC 849
Query 897 GGCAGTGATGTTGTATCCATAAGATGATCATATTTCATTAATTCTTGTATTAGTAAAATG 956
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 850 GGCAGTGATGTTGTATCCATAAGATGATCATATTTCATTAATTCTAGTATTCTTAAAATG 909
Query 957 CGAATAA 963
| |||||
Sbjct 910 CTAATAA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5