BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33700.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1 2586 0.0
Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1 1166 0.0
> Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1
Length=1668
Score = 2586 bits (1400), Expect = 0.0
Identities = 1572/1652 (95%), Gaps = 24/1652 (1%)
Strand=Plus/Plus
Query 76 TAATCAGATATTTTCTGGGCTTCAC-TTT-AACTCTCTTCGTGCTTGGTTTTCCGATCTT 133
||||||||||||||||||||||||| ||| || |||||| ||||||| ||||||||||||
Sbjct 24 TAATCAGATATTTTCTGGGCTTCACTTTTAAAGTCTCTTTGTGCTTGATTTTCCGATCTT 83
Query 134 AGTCGTTACTAATTGAGTCGGAGACTGTTCATTTCCTGA-TTCTGAAGAAAG-------- 184
| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 84 TGCCGTTACTAATTGAGTCGGAGACTGTTCATTTCCTGACTT-TGAAGAAAGTTTTCAAC 142
Query 185 TTTTGGAGAAGGAGAAGATGTCAACTCTGCGAGTGAGCTAGGGTTTAGTGTGTTTTCCGA 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 143 TTTTGGAGAAGGAGAAGATGTCAAGTCTGCGAGTGAGCTAGGGTTTAGTGTGTTTTCTGA 202
Query 245 TTT-TTGAGCTCTTGGGGATTGTTG-TTTTCTCTTAAAGAGTCGATTTTGAATGGCGGTG 302
||| ||||||| |||||||||| || |||| |||||||||| ||||||||||||||||||
Sbjct 203 TTTCTTGAGCTTTTGGGGATTG-TGATTTTATCTTAAAGAGGCGATTTTGAATGGCGGTG 261
Query 303 GAGTATGTATGTTGCAGCCCAAACTTCTTTATACATATAGCTGTGATTGTGTTTCTTGTC 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 262 GAGTATGTATGTTGCAGCCCAAACTTCTTCATACATATAGCTGTGATTGTGTTTCTTGTC 321
Query 363 TTGTTCGCTGGACTCATGTCTGGCTTAACATTGGGTCTTATGTCTTTGAGTCTCGTTGAT 422
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 322 TTGTTCGCTGGACTTATGTCTGGTTTAACATTGGGTCTTATGTCTCTGAGTCTCGTTGAT 381
Query 423 CTTGAAGTTCTCGCTAAATCCGGTACACCTGAACATCGTAAATATGCAGCAAAGATATTG 482
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 382 CTTGAAGTTCTCGCTAAATCGGGTACACCCGAACATCGTAAATATGCTGCAAAGATATTG 441
Query 483 CCAGTGGTAAAGAATCAGCACT-TGTTGCTTGTCACTTTACTTATATGCAATGCAGCTGC 541
|||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 442 CCAGTGGTGAAGAATCAGCA-TCTGTTGCTTGTCACTTTACTTATATGCAACGCAGCTGC 500
Query 542 TATGGAGACGCTTCCTATTTTTCTTGATGGCCTTGTGACGGCATGGGGTGCCATTTTGAT 601
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TATGGAGACGCTCCCTATTTTTCTTGATGGCCTTGTGACGGCATGGGGTGCCATTTTGAT 560
Query 602 TTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCTCAGTCGATTTGTTCACGTTA 661
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 561 TTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCGCAGTCAATTTGCTCACGCTA 620
Query 662 TGGTTTAGCGATTGGTGCAACAGTGGCTCCGTTTGTCCGTGTCCTAGTCTTTATCTGCTT 721
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 621 TGGTTTGGCGATTGGTGCAACAGTGGCTCCGTTTGTTCGTGTCCTAGTCTTTATCTGCTT 680
Query 722 ACCTGTTGCATGGCCAATAAGCAAGTTGCTGGACTTTCTATTGGGTCATCGTCGTGCAGC 781
|||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||
Sbjct 681 ACCTGTTGCATGGCCAATTAGCAAGCTGCTGGACTTTCTATTGGGTCATCGCCGAGCAGC 740
Query 782 GCTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATGGAAATGAGGCT-GGAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 741 ACTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATGGAAATGAGGCTGGGAA 800
Query 841 AGGGTGGGGAGTTGACTCATGACGAAACGACAATCATTGCAGGAGCTCTTGAACTCTCTG 900
| ||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct 801 A-GGTGGAGAGTTGACTCATGATGAAACGACAATCATCGCAGGAGCTCTCGAACTGTCTG 859
Query 901 AGAAAATGGTCAAAGATGCAATGACACCAATATCGGATATCTTTGTGATTGATATCAATG 960
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 860 AGAAAATGGTCAAGGATGCAATGACACCAATATCTGATATCTTTGTGATTGATATCAATG 919
Query 961 CCAAACTAGACAGAGACTTGATGAACTTGATTCTTGAGAAAGGGCATAGCAGAGTTCCAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CCAAACTAGACAGAGACTTGATGAACTTGATTCTTGAGAAAGGGCATAGCAGAGTTCCAG 979
Query 1021 TATACTATGAGCAGCCAACTAACATAATCGGCCTTGTTCTGGTGAAGAACTTATTAACTA 1080
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 980 TATACTATGAGCAGCCAACTAACATAATCGGCCTTGTTCTGGTAAAGAACTTATTGACTA 1039
Query 1081 TCAACCCAGATGAAGAAATACCTGTCAAGAATGTCACGATAAGAAGGATTCCAAGAGTTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TCAACCCAGATGAAGAAATACCTGTCAAGAATGTCACGATAAGAAGGATTCCAAGAGTTC 1099
Query 1141 CAGAAATCTTGCCTTTATATGACATATTGAACGAATTCCAGAAAGGACTCAGCCACATGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CAGAAATCTTGCCTTTATATGACATATTGAACGAATTCCAGAAAGGACTCAGCCACATGG 1159
Query 1201 CTGTTGTTGTAAGACAGTGTGACAAAATCCACCCATTACCTTCTAAAAATGGGAGTGTTA 1260
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CTGTTGTTGTGAGACAGTGCGACAAAATCCACCCATTACCTTCTAAAAATGGGAGTGTTA 1219
Query 1261 AGGAAGCCCGAGTGGATGTGGATAGTGAGGGAACTCCTACTCCTCAGGAGAGAATGTTAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 AGGAAGCCCGAGTGGATGTGGATAGTGAGGGAACTCCTACTCCTCAGGAGAGAATGTTAA 1279
Query 1321 GGACAAAAAGATCGCTTCAAAAGTGGAAGAGCTTTCCGAATCGAGCAAGTTCGTTTAAAG 1380
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1280 GGACGAAAAGATCGCTTCAAAAGTGGAAGAGCTTTCCGAATCGAGCAAATTCGTTTAAAG 1339
Query 1381 GAGGGTCAAAGAGCAAGAAGTGGTCAAAAGACAATGATGCAGACATCCTGCAATTGAATG 1440
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1340 GAGGGTCAAAGACCAAGAAGTGGTCAAAAGACAATGATACAGACATCCTGCAACTGAATG 1399
Query 1441 GCAATCCGCTGCCTAAACTTGCTGAGGAAGAAGAAGCAGTCGGAATCATTACGATGGAGG 1500
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1400 GCAATCCGCTGCCTAAACTTGCTGAGGAAGAAGAAGCTGTCGGAATCATTACAATGGAGG 1459
Query 1501 ATGTCATTGAAGAACTTCTGCAGGAGGAGATCTTTGACGAAACTGATCACCATTTTGAAG 1560
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1460 ATGTCATTGAAGAACTTCTGCAGGAGGAAATCTTTGACGAAACTGATCACCATTTTGAAG 1519
Query 1561 ACTCCTAACACAGAGTGCATGACCACTGAACTGGTTATGAATGTCGAAAACTTTAGTCTT 1620
|||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1520 ACTCCTAACACA-A-TGCATTACCACTAAACTGGTTATGAATGTCGAAAACTTTAGTCTT 1577
Query 1621 TGTTTTCAACTTTCAAACT--GTCACTTGTCCGGCGAATGTGTATCAATGTAGGCATGAA 1678
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1578 TGTTTTCAACTTTCAAACTTTGTCACTTGTCCGGCGAATGTGTATCAATATAGGCATGAA 1637
Query 1679 CAACAACTTTTTCTATGGTTTCAAGATGTTTT 1710
|| || | ||| ||||||||||||||||||||
Sbjct 1638 CAGCATCGTTT-CTATGGTTTCAAGATGTTTT 1668
> Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1
Length=1441
Score = 1166 bits (631), Expect = 0.0
Identities = 1098/1315 (83%), Gaps = 66/1315 (5%)
Strand=Plus/Plus
Query 294 ATGGCGGTGGAGTATGTATGTTGCAGCCCAAACTTCTTTATACATATAGCTGTGATTGTG 353
||||||||||| |||| ||||||| | | |||||||||||||||| | |||||| |||
Sbjct 1 ATGGCGGTGGAATATGAATGTTGCGGGACGGACTTCTTTATACATATCGGTGTGATAGTG 60
Query 354 TTTCTTGTCTTGTTCGCTGGACTCATGTCTGG-CTTAACATTGGGTCTTATGTCTTTGAG 412
|| || || |||||||||||||| ||||| || ||| || ||||||||||||||| ||||
Sbjct 61 TTACTAGTGTTGTTCGCTGGACTAATGTCCGGTCTT-ACTTTGGGTCTTATGTCTATGAG 119
Query 413 TCTCGTTGATCTTGAAGTTCTCGCTAAATCCGGTACA-CCTGAACATCGTAAAT-ATGCA 470
||||||||||||||||||||| |||||||||||||| || | | ||||| | ||||
Sbjct 120 TCTCGTTGATCTTGAAGTTCTTACTAAATCCGGTACACCCAG-AGATCGT-CTTCATGCT 177
Query 471 GCAAAGATATTGCCAGTGGT-AAAGAATCAGCA-CTTGTTGC-TTGTCACTTTACTTATA 527
| |||||||||||| || || ||| |||||||| ||| |||| |||| |||||||| |||
Sbjct 178 GAAAAGATATTGCCGGTTGTGAAA-AATCAGCATCTT-TTGCTTTGT-ACTTTACTGATA 234
Query 528 TGCAATGCAGCTGCTATGGAGACGCTTCCTATTTTTCTTGATGGC-CTTGTGACGGCATG 586
|| ||||||||||||||||||||||||||||| || ||||||| | ||||||||||| ||
Sbjct 235 TGTAATGCAGCTGCTATGGAGACGCTTCCTATATTCCTTGATG-CTCTTGTGACGGCTTG 293
Query 587 GGGTGCCATTTTGATTTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCTCAGTC 646
||||||||||||||||||||| || || |||||| ||||||||||||| |||||||||||
Sbjct 294 GGGTGCCATTTTGATTTCAGTGACGTTAATTCTTTTCTTTGGTGAGATCATACCTCAGTC 353
Query 647 -GATTTGTTCACGTTATGGTTTAGCGATTGGTGCAACAGTGGCTCCGTTTGTCCGTGTCC 705
| ||||||| | | |||| || ||||||||||||||| ||||||| ||||| ||||| |
Sbjct 354 AG-TTTGTTCCCATCATGGGTTGGCGATTGGTGCAACAATGGCTCCATTTGTTCGTGTTC 412
Query 706 TAGTCTTTATCTGCTTACCTGTTGCATGGCCAATAAGCAAGTTGCTGGACTTTCTATTGG 765
|||||| ||||||||||| ||||||||||| || || ||| |||||||||||||| |||
Sbjct 413 TAGTCTGGATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTGGACTTTCTACTGG 472
Query 766 GTCATCGTCGTGCAGCGCTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATG 825
||||| |||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 473 GTCATGGTCGTGTAGCCCTTTTCCGAAGAGCTGAGCTTAAAACACTTGTGGATTTGCATG 532
Query 826 GAAATGAGGC-TGG---AAA--------GG--G-T--GGG-G-AG--TTGACTCATGACG 864
|||||||||| | ||| || | | ||| | || ||||| ||||| |
Sbjct 533 GAAATGAGGCATCATTCAAATTCTTTCAGGCTGGTAAGGGTGGAGAGTTGACACATGATG 592
Query 865 AAACGACAATCATTGCAGGAGCTCTTGAACTCTCTGAGAAAATGG-TCAAAGATGCAATG 923
|||| ||||||||||| |||||||||||||| |||| |||||||| | ||||||||||||
Sbjct 593 AAACAACAATCATTGCCGGAGCTCTTGAACTATCTGGGAAAATGGCT-AAAGATGCAATG 651
Query 924 ACACCAATATCGGATATCTTT-GTGATTGATATCAATGCCAAACTAGACAGAGACTTGAT 982
|||||||| || || | |||| ||||||||||||||||||||||||||||| || |||||
Sbjct 652 ACACCAATTTCTGACA-CTTTTGTGATTGATATCAATGCCAAACTAGACAGGGAATTGAT 710
Query 983 GAACTTGATTCTTGAGAAAGGGCATAGCAGAGTTCCAGTATACTATGAGCAGCCAACTAA 1042
||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||
Sbjct 711 GAATTTGATTCTTGAGAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAA 770
Query 1043 CATAATCGGCCTTGTTCTGGTGAAGAACTTATTAACTATCAACCCAGATGAAGAAATACC 1102
|||||| || |||||| |||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 771 CATAATTGGACTTGTTTTGGTAAAGAACTTACTAACTATCAACCCAGATGATGAAATACA 830
Query 1103 TGTCAAGAATGTCACGATAAGAAGGATTCCAAGAGTTCCAGAAATCTTGCCTTTATATGA 1162
||||||||||| || ||| |||||||||||||||||||||||| ||| || ||||||||
Sbjct 831 AGTCAAGAATGTGACAATACGAAGGATTCCAAGAGTTCCAGAAACCTTACCGTTATATGA 890
Query 1163 CATATTGAACGAATTCCAGAAAGGAC-TCAGCCACATGGCTGTTGTTGTAAGACAGTGTG 1221
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 891 TATATTGAACGAATTCCAGAAAGGACAT-AGCCACATGGCTGTTGTTGTGAGACAGTGTG 949
Query 1222 ACAAAATCCACCCATTAC-C--T--T----CTAAAAATGGGAGTGTTAAGGAAGCCCGAG 1272
|||||||||||||||||| | | | || ||| | || ||| || |||| | |||
Sbjct 950 ACAAAATCCACCCATTACACAATAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAG 1009
Query 1273 TGGATGTGGATAGTGAGGGAACTCCTACTCCTCAGGAGAGAATGTTAAGGACAAAAAGAT 1332
|||||||||||| |||| || ||| | | ||||| | || ||||| || || | ||
Sbjct 1010 TGGATGTGGATAATGAGAGA--TCC--C-CA-CAGGAAACAAAGTTAAAGAGAAGGACAT 1063
Query 1333 CGCTTCA-AAAGTGGAAGAGCTTTCCGAATCGAGCAAGTTCGTTTAAAGGAGGGTCAAAG 1391
| ||||| ||| |||||||||||||| || ||||||| ||||||||||| |||||| | |
Sbjct 1064 CACTTCAGAAA-TGGAAGAGCTTTCCAAACCGAGCAAATTCGTTTAAAGCAGGGTCGAGG 1122
Query 1392 AGCAAGAAGTGGTCAAAAGACAATGATGCAGACATCCTGCAA-TTGAATGG-CAATCCGC 1449
||||||| |||||| ||||| |||||| | ||||| |||||| || || | || ||| |
Sbjct 1123 AGCAAGAGGTGGTCCAAAGATAATGATACTGACATTCTGCAACTT-AACGAACA-TCCAC 1180
Query 1450 TGCCTAAA-CTTGCTGAGGAAGAAGAAGCAGTCGGAATCATTACGATGGAGGATGTCATT 1508
| || ||| || | |||||| ||||| || || || |||||||| ||||| |||||||||
Sbjct 1181 TTCC-AAAGCTAGATGAGGAGGAAGATGCTGTTGGTATCATTACCATGGAAGATGTCATT 1239
Query 1509 GAAGAACTTCTGCAGGAGGAGATCTTTGACGAAACTGATCACCATTTTGAAGACT 1563
||||||||| | ||||| ||||| || || || || ||||| |||||||||||||
Sbjct 1240 GAAGAACTTTTACAGGAAGAGATATTCGATGAGACGGATCATCATTTTGAAGACT 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5