BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33710.1 Length=765 Score E Sequences producing significant alignments: (Bits) Value Ahg497527 jgi|Araly1|497527|fgenesh2_kg.746__1__AT4G33710.1 865 0.0 Ahg491309 jgi|Araly1|491309|fgenesh2_kg.7__742__AT4G33710.1 808 0.0 Ahg952452 jgi|Araly1|952452|scaffold_74600001.1 789 0.0 > Ahg497527 jgi|Araly1|497527|fgenesh2_kg.746__1__AT4G33710.1 Length=555 Score = 865 bits (468), Expect = 0.0 Identities = 527/556 (95%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 50 aaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60 Query 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169 ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| Sbjct 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCGACAGGACTACCTCGATGTACACAA 120 Query 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229 ||||||||||||||||||| |||||||||||||||||||||||||||| || || | ||| Sbjct 121 CCATGCTCGAGACGACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCAATA 180 Query 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289 |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | Sbjct 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCGTTCACTCAGACTCAGG 240 Query 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGGGCGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300 Query 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360 Query 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420 Query 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCCTCCCGGTAA 480 Query 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588 ||||||||| ||| ||||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 481 TGTTAGGGGCCGTTGGCCTTACTAAGTATATGTGTACGCTGACGAATA-AAACTTGTCCA 539 Query 589 TAGAGGACGTGTGTGT 604 |||||||||||||||| Sbjct 540 TAGAGGACGTGTGTGT 555 > Ahg491309 jgi|Araly1|491309|fgenesh2_kg.7__742__AT4G33710.1 Length=539 Score = 808 bits (437), Expect = 0.0 Identities = 506/540 (94%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 50 aaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60 Query 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169 ||||||||||||||||||||||||||||||| ||| | |||||||||| | ||||||||| Sbjct 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCCAAAAGACTACCTCGCTGTACACAA 120 Query 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229 || |||||||||| ||||| |||||||||||||||||||||||||||| || || ||||| Sbjct 121 CCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCGATA 180 Query 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCAAACACTCAAACTCACG 240 Query 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300 Query 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360 Query 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420 Query 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTTTCCTCCTGGTAA 480 Query 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588 | ||||||| ||| ||||||||||| | ||||||||||| |||||| | ||||||||||| Sbjct 481 TATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGACGAATA-AAACTTGTCCA 539 > Ahg952452 jgi|Araly1|952452|scaffold_74600001.1 Length=541 Score = 789 bits (427), Expect = 0.0 Identities = 505/543 (93%), Gaps = 3/543 (1%) Strand=Plus/Plus Query 33 CAACTAAGaaaaaaaataaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTG 92 ||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 CAACTAAGATAAAAAA-AAAAATGAAGATGTTTAACTCTCTTCAAACCCTAGTACTATTG 59 Query 93 GCATTAGCTCTTGTCCTAGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGAC 152 || ||||||||| |||||||||||| ||||||||||||||||||||||| || | ||||| Sbjct 60 GCGTTAGCTCTTTTCCTAGCTTTTGTAGTTCCACTGAAAGCCCAAGACCAGCCAAAAGAC 119 Query 153 TACCTTGATGTACACAACCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCAT 212 ||||| | ||||||||||| |||||||||| ||||| ||||||||||||||||||||||| Sbjct 120 TACCTCGCTGTACACAACCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCAT 179 Query 213 GCGGGAGCAGCCCGATACGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTC 272 ||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 180 GCGGGGGCGGCGCGATACGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTC 239 Query 273 ATTCACTCAAACTCACGCGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 332 | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 240 AAACACTCAAACTCACGCGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 299 Query 333 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCG 392 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 300 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCG 359 Query 393 AACACATGCCGTGCTGGAAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCA 452 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 AACACATGTCGTGCTGGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTC- 418 Query 453 GA-GTGGGTTGGATGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 511 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GAAGTGGGTTGGGTGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 478 Query 512 CTATTCTCATCCTGGTAATGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGA 571 ||||| || |||||||||| ||||||| ||| ||||||||||| | ||||||||||| || Sbjct 479 CTATTTTCCTCCTGGTAATATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGA 538 Query 572 CGA 574 ||| Sbjct 539 CGA 541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28210958580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5