BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33710.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497527 jgi|Araly1|497527|fgenesh2_kg.746__1__AT4G33710.1 865 0.0
Ahg491309 jgi|Araly1|491309|fgenesh2_kg.7__742__AT4G33710.1 808 0.0
Ahg952452 jgi|Araly1|952452|scaffold_74600001.1 789 0.0
> Ahg497527 jgi|Araly1|497527|fgenesh2_kg.746__1__AT4G33710.1
Length=555
Score = 865 bits (468), Expect = 0.0
Identities = 527/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 50 aaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60
Query 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCGACAGGACTACCTCGATGTACACAA 120
Query 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229
||||||||||||||||||| |||||||||||||||||||||||||||| || || | |||
Sbjct 121 CCATGCTCGAGACGACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCAATA 180
Query 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289
|||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |
Sbjct 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCGTTCACTCAGACTCAGG 240
Query 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGGCGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300
Query 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360
Query 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420
Query 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCCTCCCGGTAA 480
Query 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588
||||||||| ||| ||||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 481 TGTTAGGGGCCGTTGGCCTTACTAAGTATATGTGTACGCTGACGAATA-AAACTTGTCCA 539
Query 589 TAGAGGACGTGTGTGT 604
||||||||||||||||
Sbjct 540 TAGAGGACGTGTGTGT 555
> Ahg491309 jgi|Araly1|491309|fgenesh2_kg.7__742__AT4G33710.1
Length=539
Score = 808 bits (437), Expect = 0.0
Identities = 506/540 (94%), Gaps = 2/540 (0%)
Strand=Plus/Plus
Query 50 aaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTGGCATTAGCTCTTGTCCT 109
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAAATGAAGATGTTTAACTCTCCTCAAACCCTAGTACTATTGGCGTTAGCTCTTGTCCT 60
Query 110 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGACTACCTTGATGTACACAA 169
||||||||||||||||||||||||||||||| ||| | |||||||||| | |||||||||
Sbjct 61 AGCTTTTGCAGTTCCACTGAAAGCCCAAGACGGGCCAAAAGACTACCTCGCTGTACACAA 120
Query 170 CCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCATGCGGGAGCAGCCCGATA 229
|| |||||||||| ||||| |||||||||||||||||||||||||||| || || |||||
Sbjct 121 CCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCGATA 180
Query 230 CGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTCATTCACTCAAACTCACG 289
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 181 CGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTCAAACACTCAAACTCACG 240
Query 290 CGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 349
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAGT 300
Query 350 GAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCGAACACATGCCGTGCTGG 409
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCGAACACATGTCGTGCTGG 360
Query 410 AAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCAGAGTGGGTTGGATGTGC 469
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 361 AAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGGAGTGGGTTGGGTGTGC 420
Query 470 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTCTCATCCTGGTAA 529
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 421 CAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTTTCCTCCTGGTAA 480
Query 530 TGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGACGAA-AGAAACTTGTCCA 588
| ||||||| ||| ||||||||||| | ||||||||||| |||||| | |||||||||||
Sbjct 481 TATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGACGAATA-AAACTTGTCCA 539
> Ahg952452 jgi|Araly1|952452|scaffold_74600001.1
Length=541
Score = 789 bits (427), Expect = 0.0
Identities = 505/543 (93%), Gaps = 3/543 (1%)
Strand=Plus/Plus
Query 33 CAACTAAGaaaaaaaataaaaaTGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTG 92
||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 CAACTAAGATAAAAAA-AAAAATGAAGATGTTTAACTCTCTTCAAACCCTAGTACTATTG 59
Query 93 GCATTAGCTCTTGTCCTAGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGAC 152
|| ||||||||| |||||||||||| ||||||||||||||||||||||| || | |||||
Sbjct 60 GCGTTAGCTCTTTTCCTAGCTTTTGTAGTTCCACTGAAAGCCCAAGACCAGCCAAAAGAC 119
Query 153 TACCTTGATGTACACAACCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCAT 212
||||| | ||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 120 TACCTCGCTGTACACAACCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCAT 179
Query 213 GCGGGAGCAGCCCGATACGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTC 272
||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GCGGGGGCGGCGCGATACGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTC 239
Query 273 ATTCACTCAAACTCACGCGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 332
| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 240 AAACACTCAAACTCACGCGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 299
Query 333 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCG 392
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCG 359
Query 393 AACACATGCCGTGCTGGAAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCA 452
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 AACACATGTCGTGCTGGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTC- 418
Query 453 GA-GTGGGTTGGATGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 511
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAGTGGGTTGGGTGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 478
Query 512 CTATTCTCATCCTGGTAATGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGA 571
||||| || |||||||||| ||||||| ||| ||||||||||| | ||||||||||| ||
Sbjct 479 CTATTTTCCTCCTGGTAATATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGA 538
Query 572 CGA 574
|||
Sbjct 539 CGA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5