BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33720.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491308 jgi|Araly1|491308|fgenesh2_kg.7__741__AT4G33720.1 1048 0.0
> Ahg491308 jgi|Araly1|491308|fgenesh2_kg.7__741__AT4G33720.1
Length=769
Score = 1048 bits (567), Expect = 0.0
Identities = 723/792 (91%), Gaps = 36/792 (5%)
Strand=Plus/Plus
Query 4 TATATAACGTGTTCAATCCTCACTTCaaaaacccacaaaaacttt--ag-----aacgaa 56
|||||||||| ||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1 TATATAACGTATTCAATCCTCACTTCTAAAACCCACAAAAACTTTAAAGTTCTAAACGAA 60
Query 57 aaaagatgaaaatctttaactcatctcaaaacCTATTCTTGGCCATAACCTTTTTCCTTG 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAAAGATGAAAATCTTTAACTCATCTCAAAACCTATTCGTGGCCATAACCTTTTTCCTTG 120
Query 117 TTCTCATAGTTCATCTAAAAGCCCAAGACAGTCCTCAAGACTTTTTGGCAGTTCACAACC 176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTCTCATAGTTCATCTAAAAGCCCAAGACAGTCCTCAAGACTTTTTGGCAGCTCACAACC 180
Query 177 GAGCACGAGCCGAGGTTGGGGTGGGACCCTTAAGATGGGACGAGAAGGTGGCTGCTTATG 236
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCACGCGCTGAGGTTGGGGTGGGTCCCTTAAGATGGGACGAGAAGGTGGCTGCTTATG 240
Query 237 CCCGTAACTATGCTAACCAGCGTAAAGGTGACTGCGCTATGAAACACTCGAGCGGGTCCT 296
|||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 241 CCCGTAGCTATGCGAACCAGCGTAAAGGTGACTGCGCTATGAAACACTCTAGCGGACCCT 300
Query 297 ATGGAGAGAACATCGCTTGGAGCAGCGGTAGCATGACAGGCGTAGCAGCAGTTGACATGT 356
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 301 ATGGAGAGAACATCGCTTGGAGCAGCGGTAGCATGACAGGCGTTGCAGCCGTTAACATGT 360
Query 357 GGGTGGACGAGCAATTTGACTACGATTATGATTCCAATACATGTGCATGGGACAAACAGT 416
||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||
Sbjct 361 GGGTGGACGAGCAATTTGACTACGATTATAATTCCAACACATGTGCTTGGAACAAACAGT 420
Query 417 GTGGCCACTATACTCAGGTTGTGTGGAGAAACTCGGAGAGGTTGGGATGTGCAAAAGTGA 476
|||||||||||||||||||||||||||||||| ||| || | | |||||||||||||| |
Sbjct 421 GTGGCCACTATACTCAGGTTGTGTGGAGAAACACGGCGAAGCTAGGATGTGCAAAAGTCA 480
Query 477 GATGCAACAATGGTCAAACCTTTATCACTTGCAACTACGATCCTCCCGGTAACTGGGTTG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATGCAACAATGGTCAAACCTTTATCACTTGCAACTACGATCCTCCCGGTAACTGGGTTG 540
Query 537 GCGAGTGGCCTTACTAAAAGAAAACTCCATT-TAAATGTTTTCGAATATATGTT-ATCCA 594
||||||||||||||||||| ||| ||||||| ||| |||||| ||||||||||| || ||
Sbjct 541 GCGAGTGGCCTTACTAAAA-AAACCTCCATTGTAA-TGTTTTTGAATATATGTTTATACA 598
Query 595 CATGTATATATGTATTGTTTCCATGTTGTTCAGTTATACCAATCATCTAT----CGTCAG 650
|||| | || ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 599 CATG-A-AT--GTATTGTTTCCATGTTGTTCAGTTATACCAATCATATATATATCGTCAG 654
Query 651 CTAATAAAGATTGGTTTGTGTGGTCCTGGTCCGGTCCGGTCTTCTTTTGTACCACATGTA 710
||||||||||||||||||| || |||||||||| |||| || |||||| |||||
Sbjct 655 CTAATAAAGATTGGTTTGT-----CC-GGTCCGGTCC--TCTT-TT--GTACCATATGTA 703
Query 711 TAATGTATGCGTGGATTTTTATAATGGAATAAGAAAAATGCAATGCTACGGCTTGCACTT 770
| | | ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 704 T--T--A--CGTGGATTTTTATGATGGAATAATAAAAATGCAATGCTACGGCTTGCACTT 757
Query 771 GCTTTGTTTGCT 782
||||||||||||
Sbjct 758 GCTTTGTTTGCT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5