BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33730.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944549 jgi|Araly1|944549|scaffold_700778.1 826 0.0
> Ahg944549 jgi|Araly1|944549|scaffold_700778.1
Length=561
Score = 826 bits (447), Expect = 0.0
Identities = 497/521 (95%), Gaps = 4/521 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCATAAGGTTGCTATTGAAACCTTGGTTCTCCTACTTCTCATCAATTACTTGACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTTTCATAAGGTTGCTATTGAAACCTTGGTTCTCCTACTTCTCATCAATTACTTGACA 80
Query 61 CAAATCGATGTTTCCTCCGCACAATACTCTCAGTATCCTCAGTCCCATGAATATCCTGAC 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 81 CAAATCGATGTTTCTTCCGCACAATACTCTCAGTATCCTCAGTCCCATGAATCTCCTGAC 140
Query 121 AGCTACCTTAGACCCCACAACGCAGCCCGAGCCGCGGTCAAAGTCAAGCCTCTAAGATGG 180
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 141 AGCTACCTTAGACCCCATAACGCAGCCCGAGCCGCGGTCAAAGTCAGGCCTCTAAGATGG 200
Query 181 GATTTCGGTATAGCCACTGTGGCTCAGGACTACGCAAACCATCTAGCCTCAGGT-CCATG 239
|| |||||||||||||||||||||||||||||||||||||| |||||| | ||| || ||
Sbjct 201 GACTTCGGTATAGCCACTGTGGCTCAGGACTACGCAAACCAACTAGCCGCCGGTTCC-TG 259
Query 240 CAGTCTTGAACATTCCTCTGGACCATATGGAGAGAATCTTGCATTTGGCAGTGGAGACAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CAGTCTTGAACATTCCTCTGGACCATATGGAGAGAATCTTGCATTTGGCAGTGGAGACAT 319
Query 300 GTCGGCCGCTCAGGCGGTTGCGATGTGGGTACATGAGAAGTCGTACTATGATTTTTACTC 359
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 320 GTCGGCGGCTCAGGCGGTTGCAATGTGGGTAGATGAGAAGTCGTACTATGATTTTTACTC 379
Query 360 AAACTCGTGCCATGGTCCGGCTTGTGGACACTACACGCAGGTCGTGTGGCGTGGCTCAGC 419
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 AAACTCGTGCCACGGACCGGCTTGTGGACACTACACACAGGTCGTGTGGCGTGGCTCAGC 439
Query 420 TCGTCTCGGTTGTGGTAAGGCTAAGTGTAATAATGGTGCCAGTATTGTTGTGTGTAACTA 479
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 440 TCGGCTCGGTTGTGGTAAGGCTAAGTGTAATAATGGTGCAAGTATTGTCGTGTGTAACTA 499
Query 480 TGACCCCGCAGGCAATTACATTGG-AGCTAGACCATATTGA 519
|||||| ||||||||||| ||||| | ||| ||||||||||
Sbjct 500 TGACCCTGCAGGCAATTATATTGGTA-CTAAACCATATTGA 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5