BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33740.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491306 jgi|Araly1|491306|fgenesh2_kg.7__739__AT4G33740.2 1120 0.0
Ahg491304 jgi|Araly1|491304|fgenesh2_kg.7__737__AT4G33750.1 846 0.0
> Ahg491306 jgi|Araly1|491306|fgenesh2_kg.7__739__AT4G33740.2
Length=812
Score = 1120 bits (606), Expect = 0.0
Identities = 720/773 (93%), Gaps = 16/773 (2%)
Strand=Plus/Plus
Query 1 AACTATAATAAACTCGAAGCTCTAAAGAAAGCTTCTCTGTCTTCTTCTCTTAGATAACTC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AACTATAATAAACTCGAATCTCTAAAGAAAGCTTCTCTGTCTTCTTCTCTTAGATAACTC 115
Query 61 TTACTCAGCTGAGAAGAAGTATTGTTGAAGATGAAGAAAACATCAACCAGAAGCCAAAGA 120
| || | || | | | ||||||||||| |||||| |||||||||||||
Sbjct 116 -T-CT---C-------AA--ACT-CT-CAGATGAAGAAAGCATCAAGCAGAAGCCAAAGA 159
Query 121 GGAAGCAAAGGTATCAAAGGGAAGCATGTCCTGCAGATATGTGTTCTGCTTGGAGTATGC 180
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 160 GGAAGCAAAGGTATTAAAGGGAAGCATGTCCTGCAGATATGTGTTTTGCTTGGAGTTTGC 219
Query 181 ATTTGGTTAATCTATCAAGTGAAGTATTCTCATGATAAGAAGAAGGAATTTTATGAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ATTTGGTTAATCTATCAAGTGAAGTATTCTCATGATAAGAAGAAGGAATTTTATGAGAAA 279
Query 241 GATGTCGAGAAATCGACGGTGTTGTTGTCAGAGGTTGAAGATGGAGTGGTGAAGCTTGGG 300
||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 280 GATGTCGAGAAATCGACGGTGGTGTTGTCGGAGATTGAAGATGGAGTGGTGAAGCTTGGG 339
Query 301 AGGAAAGATCTTCTTCCTAAGAATTATAACCAGAAGGAAAACGAGAAGCACGTggaagag 360
|||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 340 AGGAAAGATCTTGTTCCTAAGTATCATAACCAGAAGGAAAACGAGAAGCATGTGGAAGAG 399
Query 361 gatgaggatgaagaagagatcagtcatggaggtgaagagaaggagaagaagagtaaagta 420
|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||
Sbjct 400 GATGAGGATGAAGAAGAGGTTAGTCATGAAGGAGAAGAGAAGGAGAAGAAGAGTAAAGTA 459
Query 421 gagaaTGGTAATCATGAGGAGGAGGTGGAGAAAGACGAGGAAGAGGAAGTAGCTGAGGAT 480
||||||||||||||||||||||||| |||||||| || ||||||||||| | ||||||
Sbjct 460 GAGAATGGTAATCATGAGGAGGAGGAAGAGAAAGAAGAAGAAGAGGAAGTTGTTGAGGAG 519
Query 481 GATGAAGAAGATAAGAATAAGCAAGGAGAGGAAGTAGCTGAGGAGGATGAGGAAGAGAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 520 GATGAAGAAGATAAGAATAAGCAAGGAGAGGAAGTAGCTGAGGAGGATGAGGATGAGAAC 579
Query 541 AAACATGAGGAAGATGAGATTGATGAACAAGATCAAAGTAAAAATGCTGGAGATACTGAT 600
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 580 AAACATGAGGAAGATGAGATTGATGAACAAGATCAAAGTAAAACCGGTGGAGATACTGAT 639
Query 601 AAGGatgatgaaacacttgaagaagagaaagagagtggaatgagtgagaacgatgagaaa 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 640 AAGGATGATGAAACACTTGAAGAAGAGAAAGAGAGTGGAAGGAGTGAGAACGATGAGAAA 699
Query 661 gaaaaagagaCTAATCATGCAGATGAAATTGATATGACAGTTGATGAGGCACGCGAGGAG 720
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 700 GAAAAAGAGACTGATCATGCAGATGAGATTGATATGACCGTTGATGAGGCACGCGAGGAG 759
Query 721 CATTACAAGGCTGATGATGCTTCCAGTGCTGTGTCTCATGAGTCTCGGATACT 773
||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 760 CATTACAAGGCTGATGATGCTTCCAGTGCAGTGTCTCATGAGTCTCGGTTACT 812
> Ahg491304 jgi|Araly1|491304|fgenesh2_kg.7__737__AT4G33750.1
Length=566
Score = 846 bits (458), Expect = 0.0
Identities = 532/567 (94%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 1068 AGATCGGAGTCAAGGAGATGGTGCACTGCCTGCAGGATTCTCTGAACCACAGCCGCCCGT 1127
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 6 AGATCGGAGTCAAGAAGATGGTGCACCGCCTGCAGGATTCTCTGAACCACA---GCCTGT 62
Query 1128 CTTGGAACTTGAGAAAAACCGTAACGAATCTGATCCCGACATCCCTATTTCTGCTGACAT 1187
||||||||||||| ||| |||||| || ||||||||| |||||||||||||||| ||||
Sbjct 63 CTTGGAACTTGAGCAAACCCGTAATGACTCTGATCCCAACATCCCTATTTCTGCAAACAT 122
Query 1188 TACCAACAAAGATTTCATTCAAGATGAGTCTAGGAACTCAACTTCAGAATCTTCTCTACT 1247
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 123 TACCAACAAAGATTCCATTCAAGATGAGTCCAAGAACTCAACTTCAGAATCTTCTCTACT 182
Query 1248 TGAAAACATCGCTGGCTCAAACACGACCGAGGTGAATGAGAATTCAAGGTCTGAAGGTGA 1307
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 183 TGAAAACATCGCTGGCTCAAACACGACCGAGGCGAATGAGAATTCAAGGTCTG-AGG-G- 239
Query 1308 TGATGATGAATCAGGTGAAAAGGAAAGTTCAAACATTTTCTCCACAGAGCTAACAGAGGA 1367
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TGATGATGAATCAGGCGAAAAGGATAGTTCAAACATTTTCTCCACAGAGCTAACAGAGGA 299
Query 1368 GGCAGATAATACTTCCGGAACGTCGATTTCCCAAGAAGAGATGGATGCTCTCACTGATCC 1427
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCAGATAATACTTCCGAAACCTCGATTTCCCAAGAAGAGATGGATGCTCTCACTGATCC 359
Query 1428 ACAAACTCTTCCTGATATAAGAATAGAAGGCAATGAAGAAGATGAAGAGGAAGCAATTGG 1487
||||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 360 ACAAACTCTGCCGGATATAAGAATAGAAGGGAATGAAGAAGATGAAGAGGAAGCACTTGG 419
Query 1488 AGCAGAGAGAAAGAAACTCTAGTGGAAAAAAGGATAAGTT-AATGTAAAATG-TTTTTAT 1545
||||||||||||||| ||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 420 AGCAGAGAGAAAGAAGCTCTAGTGGAAAAAAAGATAAGTTAAATGTGAAATGTTTTTTAT 479
Query 1546 GCTTTTGCAGCCATGTCATTGTAAAAGCTAAAAACATCAGTCTGTCTCTGTTACTTAGTT 1605
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTTTTGCAGTTATGTCATTGTAAAAGCTAAAAACATCAGTCTGTCTCTGTTACTTAGTT 539
Query 1606 TCGCAAATCTGTATATTATTCATTTGG 1632
|||||||||||||||||||||||||||
Sbjct 540 TCGCAAATCTGTATATTATTCATTTGG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5