BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33770.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944546 jgi|Araly1|944546|scaffold_700775.1 1910 0.0
Ahg343072 jgi|Araly1|343072|fgenesh1_pg.C_scaffold_3002835 315 8e-85
> Ahg944546 jgi|Araly1|944546|scaffold_700775.1
Length=1216
Score = 1910 bits (1034), Expect = 0.0
Identities = 1149/1204 (95%), Gaps = 10/1204 (1%)
Strand=Plus/Plus
Query 167 TTTTTATACCGTTTCTATTAATGTTTGGGACTCTTGCTTCCGGCGAAATCGAAACTGCCA 226
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 1 TTTTTATACCGTTTCTATTAATGTTCGAGACACTTGCTTCCGGCGAAATCGAAACTGCCA 60
Query 227 GACTGAACCGTAATTTGGGGATTACGTCCAATTTAGGGGTTTCCTGCGGTGGATTTGAAG 286
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GATTGAGCCGTAATTTGGGGATTACGTCCAATTTAGGGTTTTCCTGCGGTGGATTTGAAG 120
Query 287 ACTTTGCTATGAGATTCGAAGGGGAAAACATGGTGCCA-TACAAAGGTGAAGAGCAGGAG 345
|||||||||||||||||||||||||||||||||||||| | ||||| || | || |||||
Sbjct 121 ACTTTGCTATGAGATTCGAAGGGGAAAACATGGTGCCACT-CAAAGCTG-A-AG-AGGAG 176
Query 346 GAGGAAGAAGACCAAGTGGTGGTGAACGAAACGACGCCGTTCCAGTTTCAACAACCTTTG 405
|| ||||| || |||| | ||| | |||||||||| |||| ||||| |||||||| |||
Sbjct 177 GAAGAAGACGAAGAAGTTGCGGTCACCGAAACGACGGCGTTTCAGTTGCAACAACCGTTG 236
Query 406 TTTC-T--GCAGCAGCAGCAGAAGCTCGTTGTTGGGTATGCTCTGACTTCTAAGAAGAAG 462
|||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 TTTCTTCAGCAGCAGCAGCAGAAACTCGTTGTTGGGTATGCTCTGACTTCTAAGAAGAAG 296
Query 463 AAGAGTTTCTTGCAGCCCAAGCTTGAACTTCTTGCTAGGAGAAAAGGCATTTTCTTTGTC 522
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 297 AAGAGTTTCTTGCAGCCCAAGCTTGAACTTCTTGCTAGAAGAAAAGGCATTTTCTTTGTC 356
Query 523 GCCATCGATTTGAACCGGCCCCTATCTGAACAAGGGCCATTTGATGTTGTTTTGCATAAG 582
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GCCATCGATTTGAACCGGCCCCTATCTGAACAAGGGCCATTTGATGTCGTTTTGCATAAG 416
Query 583 TTGTTGGGAAAAGAGTGGGAAGAGGTTATTGAGGATTACCAACAAAAACACCCAGAAGTG 642
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 TTGCTGGGAAAAGAGTGGGAAGAGGTTATTGAGGATTACCAACAAAAACATCCAGAAGTG 476
Query 643 ACTGTGCTTGATCCTCCAGGATCAATACAGCGTATATATAATCGACAATCGATGCTTCAG 702
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 477 ACTGTGCTTGATCCTCCAGGATCAATACAGCGTATATATAACCGACAATCGATGCTTCAG 536
Query 703 GGTATGGCAGATTTGAAACTGTCAGATTGCAGTGGCAGCCTTTTTGTTCCAAAGCAAATG 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGTATGGCAGATTTGAAACTGTCAGATTGCAGTGGCAGCCTTTTTGTTCCAAAGCAAATG 596
Query 763 GTTGTCTTGAAAGATTCAGCAGCTAGTGCTGATGCAGTTGTGGAAGCTGGTCTCAAATTT 822
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 597 GTCGTCTTGAAAGATTCAGCAGCTAGTGCTGATGAAGTTGTGGAAGCTGGTCTTAAATTT 656
Query 823 CCACTAGTTGCAAAGCCGCTCTGGATCGATGGGACTGCAAAGTCACATCAATTGTACTTG 882
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 CCACTAGTTGCAAAGCCGCTCTGGATCGATGGAACTGCAAAGTCACATCAATTGTACTTA 716
Query 883 GCTTATGACAGGCGCTCGCTTGCAGAGCTTGATCCGCCTTTAGTCCTTCAAGAGTTTGTT 942
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 717 GCTTATGACAGGCGCTCGCTTGCAGAACTCGATCCCCCTTTAGTCCTTCAAGAGTTTGTT 776
Query 943 AATCATGGTGGAGTTATGTTCAAGGTATTTGTGGTGGGTGATGTTATAAAAGTCATGAGA 1002
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 777 AATCATGGTGGAGTTATGTTCAAGGTTTTTGTGGTGGGTGATATTATAAAAGTCATGAGA 836
Query 1003 CGGTTTTCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTCCAA 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 CGGTTTTCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTTCAA 896
Query 1063 TTCCCAAGGGTTTCATCAGCTGCTGCTTCAGCTGATAACGCAGACTTGGACCCTCGTGTT 1122
|||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 897 TTCCCAAGGGTTTCATCAGCTGCTGCTTCAGCAGACAATGCAGATTTGGACCCTCGTGTT 956
Query 1123 GCTGAGCTACCTCCAAAGCCTTTCCTCGAGGCGCTTGTGAAAGAGCTAAGAAGCTTATTG 1182
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 957 GCTGAGCTACCTCCAAAGCCCTTCCTCGAGGCGCTGGTGAAAGAGCTAAGAAGCTTATTG 1016
Query 1183 GGACTTCGGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTAT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGACTTCGGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTAT 1076
Query 1243 GTTATTGACATCAACTATTTTCCTGGTTACGGAAA-ACTGCCAGACTACGAGCAAGTCTT 1301
||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||
Sbjct 1077 GTTATTGACATCAACTATTTTCCTGGTTATGGAAAGA-TGCCAGATTACGAGCAAGTCTT 1135
Query 1302 TGTAGATTTCTTCCAAAATCTGGCGCAGGTCAAATATAAGAAGAGACAACATTGTAAATG 1361
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 TGTAGATTTCTTCCAAAATCTGGCGCAAGTCAAATATAAGAAGAGACAACATTGTAAATG 1195
Query 1362 AAAG 1365
||||
Sbjct 1196 AAAG 1199
> Ahg343072 jgi|Araly1|343072|fgenesh1_pg.C_scaffold_3002835
Length=1122
Score = 315 bits (170), Expect = 8e-85
Identities = 273/323 (85%), Gaps = 6/323 (2%)
Strand=Plus/Plus
Query 949 GGTGGAGTTATGTTCAAGGTATTTGTGGTGGGTGATGTTATAAAAGTCATGAGACGGTTT 1008
||||||||| | |||||||| ||||| || |||||||| ||||| || | | ||||||
Sbjct 697 GGTGGAGTTCTCTTCAAGGTTTTTGTTGTTGGTGATGTGATAAAGGTGGTCCGTCGGTTT 756
Query 1009 TCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTCCAATTCCCA 1068
|||||||| ||||| || |||||||| |||| |||||||| ||| || || ||||||||
Sbjct 757 TCTCTACCCAATGTAAGCAATTGTGAGAAAGACAAAGTTGCTGGTGTATTTCAATTCCCG 816
Query 1069 AGGGTTTCATCAG-CTGCTGCTTCAGCT-GATAACGCAGACTTGGACCCTCGTGTTGCTG 1126
||||| ||||| | |||| ||||||| | || || ||||||| ||||||||||||||||
Sbjct 817 AGGGTATCATC-GTCTGCAGCTTCAG-TAGACAAAACAGACTTAGACCCTCGTGTTGCTG 874
Query 1127 AGCTACCTCCAAAGCCTTTCCTCGAGGCGCTTGTGAAAGAGCTAAGAAGCTTATTGGGAC 1186
||||||||||||||||||| ||||||| |||||||| ||| || ||| | ||||||||
Sbjct 875 AGCTACCTCCAAAGCCTTTTCTCGAGGGGCTTGTGAGAGAATTACGAAACCGATTGGGAC 934
Query 1187 TTC-GGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTATGTT 1245
| | |||| ||||||||||| |||||||| ||||||||||||| | | |||||||||||
Sbjct 935 T-CAGGCTGTTCAACATAGATATGATCAGAGAACATGGGAGCAGAGATGTGTTTTATGTC 993
Query 1246 ATTGACATCAACTATTTTCCTGG 1268
|||||||||||||||||||||||
Sbjct 994 ATTGACATCAACTATTTTCCTGG 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5