BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33780.1 Length=979 Score E Sequences producing significant alignments: (Bits) Value Ahg491300 jgi|Araly1|491300|fgenesh2_kg.7__733__AT4G33780.1 1242 0.0 > Ahg491300 jgi|Araly1|491300|fgenesh2_kg.7__733__AT4G33780.1 Length=939 Score = 1242 bits (672), Expect = 0.0 Identities = 882/973 (91%), Gaps = 55/973 (6%) Strand=Plus/Plus Query 25 ATGCCATTTTCCGCATCAatctcatcgccttcttcttctgtcgc-gct-tc-t------- 74 |||||||||||||| |||||||||||||||||||| |||| ||| || || | Sbjct 1 ATGCCATTTTCCGCCTCAATCTCATCGCCTTCTTC-TCTGGCGCTTCTCTCATCCCAAAA 59 Query 75 tcgatcgcctctctctttcttcatcttcACTCCCAAAACCCTAATCTTCACCAGAACCAG 134 |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 60 ACGATCGCCTCTCTCCTTCTTCTTCTTCACTCCCAAAACCCTAATCTTCAGCAGAACCAG 119 Query 135 GATCTCTGGTTTCCCTTA------TCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 188 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 120 GATCTCTGATTTCCCTTATCCCCTTCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 179 Query 189 GAGGGATGATTTCGCTGACGATACGAGGAGCTGGAACCGGAAGATCAAACCGGAGTATGG 248 |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 180 AAGGGATGATTTCACCGACGATACGAGGAACTGGAACCGGAAGATCAAACCGGAGTATGG 239 Query 249 GTTCGATGAGGATTACGATGGAGAAGAAGATGATGATGATCACGAGGAAGAAGATAGAAG 308 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 240 GTTCGATGAGGATTACGATGGAGAAGAAGACGAAGATGATCACGAGGAAGAAGATAGAAG 299 Query 309 CTTGGATCTGTTACTTAGATTTGTAGAAAATGTTTTCAGAAAGATTTCTAAGAGAGCAAG 368 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 300 CTTGGATCTGTTACTTAGATTTGTTGAGAATGTTTTCAGAAAGATTTCGAAGAGAGCAAG 359 Query 369 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGGTTTTCAGT 428 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 360 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGATTTTCAGT 419 Query 429 GAATGGAGTACTTATTCTTGCTTTTTTGTGGATTTTGAAGGCTTTCCTCGAGGTAGCTTG 488 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 420 GAATGGAGTACTTATTCTTGCCTTTTTGTGGATCTTGAAGGCTTTCCTCGAGGTAGCTTG 479 Query 489 CACACTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGAGT 548 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 CACGCTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGTGT 539 Query 549 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGATCCTCGTGC 608 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGACCCTCGTGC 599 Query 609 ATGGAACGGGATGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 668 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGGAACGGGGTGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 659 Query 669 T-CTGACTTTTGGGAGAGCCATAATTG--TTTAGGTTCTTCCAAGGCAATAAAACCACAG 725 | || ||||||||||| ||||||| | ||||||||||||||||||||||||||||||| Sbjct 660 TTCTAACTTTTGGGAG--CCATAATGGGGTTTAGGTTCTTCCAAGGCAATAAAACCACAG 717 Query 726 CTGAGTTCAGAATCAGAAAGCAGTTACAGTGGATGTTCATTGGCAATGTCTGATGATTTA 785 ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||| Sbjct 718 CTGAGTTCAGAATCAGATAGCAGTTACAGGGGATGTACATTGGCAGCGTCTGATGATTTA 777 Query 786 GTAAGTaaaaaaaGTGTAATATT-GTAGCATTCACCAAGTCAGCTATGCTGGTGTGTAGC 844 |||||||||||| |||||||||| |||||||||||||||||||||||| | Sbjct 778 GTAAGTAAAAAA-GTGTAATATTTGTAGCATTCACCAAGTCAGCTATG---------A-- 825 Query 845 TCAACTGGGAACTAAGTCGTCGCCAATGGTGACCATGTTTTCTTAGTTTCTAAATAAAT- 903 | || || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 826 --A-CT---AA----GTCGTCGCCAATGGTGACCATGTTTTATTAGTTTCTAAATAAATG 875 Query 904 AAACCAAACATATAGAACATACCGTTTTCCTTCTAGTTTTGTATATATAACCAAAATTAG 963 |||||||| |||||||||||||| |||||||| |||| || | |||||||||| Sbjct 876 AAACCAAATATATAGAACATACCATTTTCCTTGTAGTCTT--A-------CCAAAATTAG 926 Query 964 TAGACTTCAATTT 976 ||||||||||||| Sbjct 927 TAGACTTCAATTT 939 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369262818 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5