BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33780.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491300 jgi|Araly1|491300|fgenesh2_kg.7__733__AT4G33780.1 1242 0.0
> Ahg491300 jgi|Araly1|491300|fgenesh2_kg.7__733__AT4G33780.1
Length=939
Score = 1242 bits (672), Expect = 0.0
Identities = 882/973 (91%), Gaps = 55/973 (6%)
Strand=Plus/Plus
Query 25 ATGCCATTTTCCGCATCAatctcatcgccttcttcttctgtcgc-gct-tc-t------- 74
|||||||||||||| |||||||||||||||||||| |||| ||| || || |
Sbjct 1 ATGCCATTTTCCGCCTCAATCTCATCGCCTTCTTC-TCTGGCGCTTCTCTCATCCCAAAA 59
Query 75 tcgatcgcctctctctttcttcatcttcACTCCCAAAACCCTAATCTTCACCAGAACCAG 134
|||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 60 ACGATCGCCTCTCTCCTTCTTCTTCTTCACTCCCAAAACCCTAATCTTCAGCAGAACCAG 119
Query 135 GATCTCTGGTTTCCCTTA------TCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 188
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GATCTCTGATTTCCCTTATCCCCTTCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGG 179
Query 189 GAGGGATGATTTCGCTGACGATACGAGGAGCTGGAACCGGAAGATCAAACCGGAGTATGG 248
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 AAGGGATGATTTCACCGACGATACGAGGAACTGGAACCGGAAGATCAAACCGGAGTATGG 239
Query 249 GTTCGATGAGGATTACGATGGAGAAGAAGATGATGATGATCACGAGGAAGAAGATAGAAG 308
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 240 GTTCGATGAGGATTACGATGGAGAAGAAGACGAAGATGATCACGAGGAAGAAGATAGAAG 299
Query 309 CTTGGATCTGTTACTTAGATTTGTAGAAAATGTTTTCAGAAAGATTTCTAAGAGAGCAAG 368
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 300 CTTGGATCTGTTACTTAGATTTGTTGAGAATGTTTTCAGAAAGATTTCGAAGAGAGCAAG 359
Query 369 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGGTTTTCAGT 428
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGATTTTCAGT 419
Query 429 GAATGGAGTACTTATTCTTGCTTTTTTGTGGATTTTGAAGGCTTTCCTCGAGGTAGCTTG 488
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GAATGGAGTACTTATTCTTGCCTTTTTGTGGATCTTGAAGGCTTTCCTCGAGGTAGCTTG 479
Query 489 CACACTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGAGT 548
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 CACGCTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGTGT 539
Query 549 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGATCCTCGTGC 608
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 AGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGACCCTCGTGC 599
Query 609 ATGGAACGGGATGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 668
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGAACGGGGTGCAACCAGTTTCCTGATGAATTCGCTTTACACTTGTAGAAATCAGAAT 659
Query 669 T-CTGACTTTTGGGAGAGCCATAATTG--TTTAGGTTCTTCCAAGGCAATAAAACCACAG 725
| || ||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 660 TTCTAACTTTTGGGAG--CCATAATGGGGTTTAGGTTCTTCCAAGGCAATAAAACCACAG 717
Query 726 CTGAGTTCAGAATCAGAAAGCAGTTACAGTGGATGTTCATTGGCAATGTCTGATGATTTA 785
||||||||||||||||| ||||||||||| |||||| |||||||| |||||||||||||
Sbjct 718 CTGAGTTCAGAATCAGATAGCAGTTACAGGGGATGTACATTGGCAGCGTCTGATGATTTA 777
Query 786 GTAAGTaaaaaaaGTGTAATATT-GTAGCATTCACCAAGTCAGCTATGCTGGTGTGTAGC 844
|||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 778 GTAAGTAAAAAA-GTGTAATATTTGTAGCATTCACCAAGTCAGCTATG---------A-- 825
Query 845 TCAACTGGGAACTAAGTCGTCGCCAATGGTGACCATGTTTTCTTAGTTTCTAAATAAAT- 903
| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 826 --A-CT---AA----GTCGTCGCCAATGGTGACCATGTTTTATTAGTTTCTAAATAAATG 875
Query 904 AAACCAAACATATAGAACATACCGTTTTCCTTCTAGTTTTGTATATATAACCAAAATTAG 963
|||||||| |||||||||||||| |||||||| |||| || | ||||||||||
Sbjct 876 AAACCAAATATATAGAACATACCATTTTCCTTGTAGTCTT--A-------CCAAAATTAG 926
Query 964 TAGACTTCAATTT 976
|||||||||||||
Sbjct 927 TAGACTTCAATTT 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5