BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33790.1
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888706 jgi|Araly1|888706|Al_scaffold_0007_692 2266 0.0
Ahg897209 jgi|Araly1|897209|Al_scaffold_0005_1175 732 0.0
> Ahg888706 jgi|Araly1|888706|Al_scaffold_0007_692
Length=1482
Score = 2266 bits (1227), Expect = 0.0
Identities = 1402/1487 (94%), Gaps = 10/1487 (1%)
Strand=Plus/Plus
Query 57 ATGTCGACAGAAATGGAGGTCGTTAGTGTTCTTAAGTACCTTGACAACAAATCCATATTG 116
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGACAGAAACGGAGGTCGTAAGTGTTCTTAAGTACCTTGACAACAAGTCCATATTG 60
Query 117 GTCGTTGGAGCTGCTGGGTTCTTAGCAAATATCTTTGTGGAGAAGATATTAAGGGTGGCA 176
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTCATTGGAGCTGCTGGGTTCTTAGCAAATATTTTTGTGGAGAAGATATTAAGGGTGGCA 120
Query 177 CCAAACGTGAAGAAACTCTATCTCCTTCTAAGAGCATCAAAAGGAAAATCTGCTACCCAG 236
||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 121 CCAGACGTGAAGAAACTGTATCTCCTTCTACGAGCATCAAATGGAAAATCTGCTACCCAG 180
Query 237 AGGTTTAACGACGAGATTTTGAAGAAAGATTTGTTCAAGGTGCTGAAGGAGAAGTATGGT 296
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 181 AGGTTTAACGACGAGATTTTGAGGAAAGATTTGTTCAAGGTGGTGAAGGAGAAGTATGGT 240
Query 297 CCCAATCTAAATCAACTTACATCAGAGAAAATCACTATTGTCGACGGAGACATTTGCCTT 356
||||||||||||||||||| ||| |||||| |||||||| |||| |||||||||||||||
Sbjct 241 CCCAATCTAAATCAACTTATATCTGAGAAAGTCACTATTATCGATGGAGACATTTGCCTT 300
Query 357 GAGGATTTAGGTCTTCAAGACTTCGACTTGGCTCATGAGATGATCCACCAAGTTGATGCC 416
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GAGGATTTAGGTCTTCACGACTTCGACTTGGCTCATGAGATGATTCACCAAGTTGATGCC 360
Query 417 ATTGTTAATTTAGCTGCAACTACTAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGTTAATTTAGCTGCAACTACGAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 420
Query 477 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 480
Query 537 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 540
Query 597 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTTTAGACATCAA-CTACGAGAA 655
||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||
Sbjct 541 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTCTAGATATCAATC-ATGAGAA 599
Query 656 AAAATTGGTTCAGGAGAAACTTGACCAGCTCCGAGTAA-TCGGAGCCGCTCCTGAAACCA 714
||||| |||||||||||||||||||||||||||| | | |||||| |||||||||||
Sbjct 600 GAAATTCGTTCAGGAGAAACTTGACCAGCTCCGAGCCAGT-GGAGCCTCTCCTGAAACCG 658
Query 715 TCACGGAAACCATGAAGGATCTCGGACTCAG-ACGGGCAAAGATGTACGGATGGCCAAAC 773
|||| || |||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 659 TCACACAAGCCATGAAGGATCTCGGACTCAGGA-GGGCAAAGGTGTACGGATGGCCAAAC 717
Query 774 ACATATGTGTTCACCAAAGCAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTG 833
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 718 ACATATGTGTTCACCAAGGCAATGGGGGAGATGATGGTTGGGACAAAAAGGGAAAATCTA 777
Query 834 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTCCCTGGT 837
Query 894 TGGACTGAGGGCATCAGGACTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGGACTGAGGGCATCAGGACCATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 897
Query 954 ACGTGCTTCCTCTGTGATCTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTA 1013
|||||||| || ||||||||| ||||| |||| |||||| |||| || ||||||||||||
Sbjct 898 ACGTGCTTTCTTTGTGATCTTAATGCTATTTCCGATGTGCTGCCTGCGGATATGGTAGTA 957
Query 1014 AATTCGATTCTTGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1073
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AATTCGATTCTAGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1017
Query 1074 GTGGGTTCTTCACTTAGAAATCCGATGAAAAATTCAAAGTTTCCTGAATTAGCGTATCGG 1133
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1018 GTGGGTTCTTCACTTAGGAATCCGATGAAAAATGAAAAATTTCCTGAATTAGCGTATCGG 1077
Query 1134 TATTTCTCAATCAAACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGCCATT 1193
|||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||| ||||
Sbjct 1078 TATTTCACAACCAACCCGTGGATCAACAAAGAAGGCAAGGTCGTTCGGGTCGGGAACATT 1137
Query 1194 GAGATCCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGCTACTTGATTGCA 1253
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1138 GAGATTCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGTTACTTGATTTCA 1197
Query 1254 TTGAAGGGACTTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAG 1313
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 1198 TTGAAGGGACTTGAATTGGTAAACATGGTACTTTGCAAGTTGTTGGAGAAGGAATTTAAG 1257
Query 1314 TATTTCAATAAGAAAA-TAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCT 1372
|| ||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1258 TACTTCCATA-GAAAAATAAATTTTATATACCGGCTTGTTGATCTCTATCAGCCTTACCT 1316
Query 1373 CTTTTTCTATGGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAA-ATGGTATCGA 1431
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct 1317 CTTTTTCTATGGAATATTTGATGATACAAACACAGAAAAATTGC-AAAATATGGTATCGA 1375
Query 1432 AGACGGGAGTCGAAAACGAGATGTTTTATTTCGATCCAAAGGTTCTCGATTGGGACGACT 1491
||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1376 AGACGGGAGTCGAAAGCGAGATGTTCTATTTCGATCCAAAGGTTATCGATTGGGACGACT 1435
Query 1492 ATTTTTTGAACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1538
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1436 ATTTTTTGAATACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1482
> Ahg897209 jgi|Araly1|897209|Al_scaffold_0005_1175
Length=1341
Score = 732 bits (396), Expect = 0.0
Identities = 804/1000 (80%), Gaps = 32/1000 (3%)
Strand=Plus/Plus
Query 556 CTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACACCGTACCGTATGGGTGAGA 615
||||||| || || |||||||| || |||||||||||||| || |||| |||||||||||
Sbjct 356 CTTACGTATGTGGTGAAAAATCGGGATTGATAATGGAAACGCCATACCATATGGGTGAGA 415
Query 616 CGTTGAATGGAACCACCGGTTTAGACATCAACT-ACGAGAAAAAATTGGTTCAGGAGAAA 674
|||| || ||| | ||| |||| ||||| | | ||| | || |||||| ||||||||
Sbjct 416 CGTTAAACGGAGTAATAGGTCTAGATATCAA-TCAAGAGCAGAAGTTGGTTAAGGAGAAA 474
Query 675 CTTGA-CCAGCTCCGAGTAATCGGAGCCGCT-CCTGAAACCATCACGGAAACCATGAAGG 732
||| | | |||| | || || ||||| | | || || |||||||| || |||||||||
Sbjct 475 CTT-AGCAAGCTTCAAGCAACCGGAG-CTTTGCCCGAGACCATCACACAAGCCATGAAGG 532
Query 733 ATCTCGGACTCAGACGGGCAAAGATGTACGGATGGCCAAACACATATGTGTTCACCAAAG 792
|| | ||||| ||| ||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 533 ATTTTGGACTTAGAAGGGCAAAGATGTACGGATGGCCAAACACATACGTGTTTACGAAGG 592
Query 793 CAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTGTCACTTGTGTTGCTTCGTC 852
|||||||||| ||||| |||||| |||||| || ||| |||| | ||| | ||||||
Sbjct 593 CAATGGGGGAAATGATAGTAGGGGTAAAAAGGGAGAATATGTCGGTAGTGATAATTCGTC 652
Query 853 CTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGTTGGACTGAGGGCATCAGGA 912
||||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||
Sbjct 653 CTTCAATTATTACCAGCACCTTCAAAGAACCATTCCCCGGCTGGACCGAGGGCATCAGGA 712
Query 913 CTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTCACGTGCTTCCTCTG-TGAT 971
| ||||||||| ||||||||||||| || | |||||| ||||| |||||||| || ||||
Sbjct 713 CAATTGATAGTCTAGCTGTTGGATACGGTACAGGCAAGCTCACATGCTTCCT-TGGTGAT 771
Query 972 CTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTAAATTCGATTCTTGTATCA 1031
||| | ||| || |||||||| || ||||||||||| || ||| | || || || |||
Sbjct 772 CTTAACGCTACATCGGATGTGATACCTGCAGATATGGTTGTTAATACAATGCTAGTGTCA 831
Query 1032 ATGGCCGCTCAAGCCGGTAAACAAGAA-GAGATTATTTACCATGTGGGTTCTTCACTTAG 1090
||||| ||||| || ||| ||| ||| ||||| ||||| ||||||||||||||| | |
Sbjct 832 ATGGCTGCTCACGCTGGTGGACA-GAAAGAGATGATTTATCATGTGGGTTCTTCAATGAA 890
Query 1091 AAATCCGATG-AAAAATTC-AAAGTTTCCTGAATTAGCGTATCGGTATTTCTCAATC-AA 1147
|||||| || |||||| ||| | || ||| |||| || ||||||||| ||| | ||
Sbjct 891 AAATCC-ATTCAAAAATGAGAAAATG-CCGGAAATAGCATACCGGTATTTCACAA-CGAA 947
Query 1148 ACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGC-CATTGA-GATCCTGAGT 1205
||| ||||||||||||||||||||||| ||| ||||||| | |||| | | |||||
Sbjct 948 ACCATGGACCAACAAAGAAGGGAAGGTGGTTCGGGTCGGGAAAC-TTGATGTTT-TGAGT 1005
Query 1206 TCTATGCGTAGTTTCCATAGATACATGACCATACGCTACT-TGA-TTGCATTGAAGGGAC 1263
||||||| |||||||||||||||||||||||| | || | | | || | ||||||||||
Sbjct 1006 TCTATGCCTAGTTTCCATAGATACATGACCATTCATTA-TAT-ACTTCCTTTGAAGGGAC 1063
Query 1264 TTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAGT-ATTTCAAT 1322
|||| || | ||||| ||||||| |||| ||| |||||| |||| || || ||| |
Sbjct 1064 TTGAGTTACTGAACATGGTACTTTGTAAGTCGTTAGAGAAGAAATTG-AGGGATCTCAGT 1122
Query 1323 AAGAAAATAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCTCTTTTTCTAT 1382
||||| ||||||||| |||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1123 AAGAAGATAAATTTTGTATTGCGGCTTGTCGATCTTTATCAACCTTACCTCTTTTTCTAT 1182
Query 1383 GGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAAA-TGGTATC-GAAGACGGGAG 1440
|||||||| |||||| |||| || |||||| ||| ||||| | | | || ||| ||||
Sbjct 1183 GGAATATTCGATGATACAAATACGGAAAAACTGC-AAAAACTATTGCCAGA-GACAGGAG 1240
Query 1441 TCGAAAACGAGATGTTT-TATTTCGATCCAAAGGTTCTCGATTGGGACGACTATTTTTTG 1499
| || | | | || ||| ||||| ||||| ||| || || ||||||||||||||||| ||
Sbjct 1241 TGGAGACCAAAAT-TTTCTATTTTGATCCGAAGATTATCAATTGGGACGACTATTTTGTG 1299
Query 1500 AACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAAT 1539
| |||||| || ||||||| |||||||||||||| |||
Sbjct 1300 TATACACATATTCCTGGGCTGGTTAAGTATGTCTTCAAAT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63991611600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5