BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33800.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491299 jgi|Araly1|491299|fgenesh2_kg.7__732__AT4G33800.1 1072 0.0
> Ahg491299 jgi|Araly1|491299|fgenesh2_kg.7__732__AT4G33800.1
Length=839
Score = 1072 bits (580), Expect = 0.0
Identities = 775/862 (90%), Gaps = 42/862 (5%)
Strand=Plus/Plus
Query 31 AAATCTTTCTCAACATAGCTGTTCGATCTCAATAAGAATATATATC---TTTTCTTATAA 87
||||||||||||||| |||||||||||||||| ||| || |||||| |||| || |||
Sbjct 1 AAATCTTTCTCAACACAGCTGTTCGATCTCAACAAGTATTTATATCTTTTTTTTTTCTAA 60
Query 88 AACATAAAAGAAG-AAATGTTGGGGTCAAGTAGCGGATGCGAGTCAGGATGGACTCTGTA 146
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 AACATAAAAGAAGAAAATGTTGGGTTCAAGTAGTGGATGCGAGTCAGGATGGACTCTGTA 120
Query 147 TTTAGACCAGTCTGTTTCTTCACCAAGTCCTTCTTGTTTTAGAGACAGCAATGGGTTTGA 206
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 121 CTTAGACCAGTCGGTTTCTTCACCAACACCTTCTTGTTATAGAGACAGCAATGGGTTTGA 180
Query 207 CAGCAGAAGAAGAAGCAAAGATTCATGGGACCAAAATTATGTGCATCaa-ga-a-g-ag- 261
| ||||||||||||||||||||||||||||||| | | ||||||||| || | | ||
Sbjct 181 AAACAGAAGAAGAAGCAAAGATTCATGGGACCAACACAACGTGCATCAAGGAGACGAAGA 240
Query 262 -gaagaagaagaagaCGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGGAATAT 320
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAAGAGGAAGAAGACGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGAAATAT 300
Query 321 TTCTGAGGAAGATTCTGTG---AAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 377
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCGAGGAAGATTCTGTGAATAAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 360
Query 378 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCACTTCTTGATGATACTGCTAG 437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCAGTTCTTGATGATACTGCTAG 420
Query 438 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 480
Query 498 GCAAACCTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 557
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAAAACTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 540
Query 558 GGACAAAACAGCATTCCAAGAGCAGTGTGGTTATTTGCATATGGAAACCAGATTCTAAAT 617
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGACAATACAGCATTCCAAGAGCAGTATGGTTATTTGCATATGGAAACCAGATTCTAAAT 600
Query 618 AACCAATCAAACTGATGAAGAGCAGCAGCTATTTTGGACATTTGTGAAGCTTTTATGGAT 677
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 601 AACCAATCAAACTGAT-AAGAGCAGC---TATTTTGGACATTTGTGCAGCTTTTATGGAT 656
Query 678 TCAACTTGAATCATTTCAAGCAGTGATTAAAGTGAAACTTTAACGTCCCAAATATGAAAA 737
|||| | | | | ||||||||||||| ||| || |||| ||||||||||
Sbjct 657 TCAA---G--T-A----A-----TGATTAAAGTGAATCTTAAA-GTCC-AAATATGAAAG 699
Query 738 ATAGGAAGGAGTTTTAAGCAAAAGA--CTGATA-TAGAACGaaaaaaaaaaaGGGTTCTC 794
||||||||||||||||||||||| | | | | | ||| | | ||||| || |||||
Sbjct 700 ATAGGAAGGAGTTTTAAGCAAAAAAAACCAACAAT-GAAGGGACGAAAAACAGT-TTCTC 757
Query 795 AAATCTC--AACTGGA-CTGATTCTTTTCTCTCTTTTGCTTTGTAATTTCGTCACAAACA 851
||||||| || |||| |||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 758 AAATCTCTCAATTGGAACTGAATCTTTCCTCTCTTTTGCTTTGTAATTTCTTCACAAACA 817
Query 852 AGTTTTCCTTGTAGCCGCCTTT 873
||||||| ||||||||||||||
Sbjct 818 AGTTTTCTTTGTAGCCGCCTTT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5