BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33800.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg491299 jgi|Araly1|491299|fgenesh2_kg.7__732__AT4G33800.1 1072 0.0 > Ahg491299 jgi|Araly1|491299|fgenesh2_kg.7__732__AT4G33800.1 Length=839 Score = 1072 bits (580), Expect = 0.0 Identities = 775/862 (90%), Gaps = 42/862 (5%) Strand=Plus/Plus Query 31 AAATCTTTCTCAACATAGCTGTTCGATCTCAATAAGAATATATATC---TTTTCTTATAA 87 ||||||||||||||| |||||||||||||||| ||| || |||||| |||| || ||| Sbjct 1 AAATCTTTCTCAACACAGCTGTTCGATCTCAACAAGTATTTATATCTTTTTTTTTTCTAA 60 Query 88 AACATAAAAGAAG-AAATGTTGGGGTCAAGTAGCGGATGCGAGTCAGGATGGACTCTGTA 146 ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 61 AACATAAAAGAAGAAAATGTTGGGTTCAAGTAGTGGATGCGAGTCAGGATGGACTCTGTA 120 Query 147 TTTAGACCAGTCTGTTTCTTCACCAAGTCCTTCTTGTTTTAGAGACAGCAATGGGTTTGA 206 ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 121 CTTAGACCAGTCGGTTTCTTCACCAACACCTTCTTGTTATAGAGACAGCAATGGGTTTGA 180 Query 207 CAGCAGAAGAAGAAGCAAAGATTCATGGGACCAAAATTATGTGCATCaa-ga-a-g-ag- 261 | ||||||||||||||||||||||||||||||| | | ||||||||| || | | || Sbjct 181 AAACAGAAGAAGAAGCAAAGATTCATGGGACCAACACAACGTGCATCAAGGAGACGAAGA 240 Query 262 -gaagaagaagaagaCGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGGAATAT 320 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 AGAAGAGGAAGAAGACGATTTGTCAATGATTTCAGATGCTTCTTCTGGTCCAAGAAATAT 300 Query 321 TTCTGAGGAAGATTCTGTG---AAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 377 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCCGAGGAAGATTCTGTGAATAAGAAGATAAATATTGTTGGTCTCAAGAAACAATGCAA 360 Query 378 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCACTTCTTGATGATACTGCTAG 437 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 GAGAGAAAAGAAAAGAAGAGATTATGAGAAAATGAACTCAGTTCTTGATGATACTGCTAG 420 Query 438 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTCTCCTCTTTTCAATTTCCCTCATATGTTGCAGAAAAGTGTTGGTGGTAATAAGATAGA 480 Query 498 GCAAACCTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 557 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCAAAACTTTCCAGAAAGTACATTGGATTACTCACAAGGCTTCTCGGCTACTCAGTTTCA 540 Query 558 GGACAAAACAGCATTCCAAGAGCAGTGTGGTTATTTGCATATGGAAACCAGATTCTAAAT 617 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 GGACAATACAGCATTCCAAGAGCAGTATGGTTATTTGCATATGGAAACCAGATTCTAAAT 600 Query 618 AACCAATCAAACTGATGAAGAGCAGCAGCTATTTTGGACATTTGTGAAGCTTTTATGGAT 677 |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 601 AACCAATCAAACTGAT-AAGAGCAGC---TATTTTGGACATTTGTGCAGCTTTTATGGAT 656 Query 678 TCAACTTGAATCATTTCAAGCAGTGATTAAAGTGAAACTTTAACGTCCCAAATATGAAAA 737 |||| | | | | ||||||||||||| ||| || |||| |||||||||| Sbjct 657 TCAA---G--T-A----A-----TGATTAAAGTGAATCTTAAA-GTCC-AAATATGAAAG 699 Query 738 ATAGGAAGGAGTTTTAAGCAAAAGA--CTGATA-TAGAACGaaaaaaaaaaaGGGTTCTC 794 ||||||||||||||||||||||| | | | | | ||| | | ||||| || ||||| Sbjct 700 ATAGGAAGGAGTTTTAAGCAAAAAAAACCAACAAT-GAAGGGACGAAAAACAGT-TTCTC 757 Query 795 AAATCTC--AACTGGA-CTGATTCTTTTCTCTCTTTTGCTTTGTAATTTCGTCACAAACA 851 ||||||| || |||| |||| ||||| |||||||||||||||||||||| ||||||||| Sbjct 758 AAATCTCTCAATTGGAACTGAATCTTTCCTCTCTTTTGCTTTGTAATTTCTTCACAAACA 817 Query 852 AGTTTTCCTTGTAGCCGCCTTT 873 ||||||| |||||||||||||| Sbjct 818 AGTTTTCTTTGTAGCCGCCTTT 839 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5