BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33810.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353450 jgi|Araly1|353450|fgenesh1_pg.C_scaffold_7000623 2529 0.0
Ahg353449 jgi|Araly1|353449|fgenesh1_pg.C_scaffold_7000622 2004 0.0
> Ahg353450 jgi|Araly1|353450|fgenesh1_pg.C_scaffold_7000623
Length=1707
Score = 2529 bits (1369), Expect = 0.0
Identities = 1519/1592 (95%), Gaps = 7/1592 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCCTCCACGAAGCAGTGAAACGAAAGGATTATTACAATTTAGCCGCTCTGTCGAA 60
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 121 ATGAAGCCTCCACGAAGCAGTGAAACGCAAGGATTATTACAATTTAGCCGTTCTGTCGAA 180
Query 61 GATGACTCTGATGAAGAATGGAAAATAGATGGAAGTGGATCCATAAGAGAAATGACACAG 120
| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 181 GCTGACTCTGATGAAGAATGGAAAATAGATGAAAATGGATCCATTAGAGAAATGACACAG 240
Query 121 AGAATTCAGCTTC-ACGAAGGAAACATTTACAGCTTCTCTGCTTGGGTGAAGTTGAGAGA 179
||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 241 AGAATTCAGCTTCAAC-AAGGAAACATCTACAGCTTCTCCGCTTGGGTGAAGTTGAGAGA 299
Query 180 AGGAAACAATAAGAAAGTAGGAGTTGTGTTTAGGACAGAAAATGGAAGATTTGTTCATGG 239
||||||||| ||||||||||||||||| || |||||||||||||| || ||||||||||
Sbjct 300 AGGAAACAAGAAGAAAGTAGGAGTTGTATTCAGGACAGAAAATGG-AG--TTGTTCATGG 356
Query 240 AGGTGAAGTTAGGGCAAAGAAAAGATGTTGGACTTTGCTTAAAGGTGGCATTGTGCCAGA 299
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 357 AGGTGAAGTTAGGGCAAAGCAAGGATGTTGGACTTTACTTAAAGGTGGCATTGTGCCAGA 416
Query 300 TGTTTCAGGCTCTGTAGATATTTTCTTCGAGAGTGATGACAAAGAAGCAAAGATTTCTGC 359
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 TTTTTCAGGCTCTGTAGATATTTTCTTCGAGACTGATGACAAAGAAGCAAAGATTTCTGC 476
Query 360 AAGCGATGTGTCCCTGAAACAGTTCAGTAAACAAGAATGGAAACTGAAACAAGACCAACT 419
|||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 477 AAGCGATGTGTCGCTGAAACAGTTCAGCAAAGAAGAATGGAAACTGAAACAAGACCGACT 536
Query 420 AATTGAAAAGATAAGGAAGAGCAAGGTGAGATTTGAAGTAACTTATCAGAACAAAACTGC 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATCAGAACAAAACTGC 596
Query 480 GGTAAAAGGCGCAGTGATATCTATAGAACAAACCAAACCATCTTTCCTATTAGGCTGCGC 539
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 597 GGTAAAAGGCGCAGTGATATCCATAGAACAAACCAAACCATCTTTCCTCTTAGGGTGCGC 656
Query 540 AATGAATTTCCGGATCCTACAAAGCGAAGGGTACAGAAATTGGTTTGCGTCGCGGTTTAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AATGAATTTCCGGATCCTACAAAGCGAAGGGTACAGAAATTGGTTTGCGTCGCGGTTTAA 716
Query 600 AATCACATCCTTCACCAATGAAATGAAATGGTATACAACGGAGAAAGAACGTGGTCACGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 AATCACATCCTTCACCAATGAAATGAAATGGTATACAACGGAGAAAGAACGTGGTCAAGA 776
Query 660 GAACTACACGGCAGCTGATTCAATGTTAAAATTTGCGGAAGAGAATGGAATATTGGTTAG 719
|||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 777 GAACTACACGGCAGCTGACTCAATGCTGAAATTTGCGGAAGAGAATGGAATATTGGTTAG 836
Query 720 AGGTCATACTGTGTTGTGGGATGACCCTTTAATGCAGCCAACTTGGGTGCCAAAAATAGA 779
||||||||||||| ||||||| ||||| ||||||| |||| |||||| | ||||||| |
Sbjct 837 AGGTCATACTGTGCTGTGGGACGACCCAATAATGCAACCAAGTTGGGTACAAAAAATAAA 896
Query 780 AGATCCAAACGATTTGATGAATGTGACATTGAACCGGATAAACTCGGTTATGACGAGATA 839
||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 897 AGACCCAAATGATTTGATGAACGTGACATTGAACCGGATAAACTCGGTAATGACGAGATA 956
Query 840 CAAAGGGAAGTTAACCGGGTGGGACGTGGTTAATGAGAACGTGCATTGGGATTACTTTGA 899
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 957 CAAAGGGAAGTTAACCGGGTGGGATGTGGTTAATGAGAACGTGCACTGGGATTACTTTGA 1016
Query 900 GAAAATGCTTGGTGCCAACGCTTCGTCAAGTTTCTACAATTTGGCTTTTAAGCTTGATCC 959
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 GAAAATGCTTGGTGCAAACGCTTCGTCAAGTTTCTACAATTTGGCTTTTAAGCTAGATCC 1076
Query 960 TGATGTGACAATGTTCGTTAACGAGTACAACACGATAGAGAACCGTGTAGAGGTTACCGC 1019
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGATTTGACATTGTTCGTTAACGAGTACAACACGATAGAGAACCGTGTAGAGGTTACCGC 1136
Query 1020 GACGCCGGTTAAGGTGAAGGAGAAGATGGAGGAGATTCTTGCTTACCCAGGTAACATGAA 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1137 GACGCCGGTTAAGGTGAAGGAGAAGATGGAGGAGATTCTTGCATACCCAGGTAACATGAA 1196
Query 1080 CATTAAAGGAGCTATTGGAGCTCAAGGTCACTTTCGTCCAACTCAGCCTAACTTAGCTTA 1139
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1197 CATTAAAGGAGCAATTGGAGCTCAGGGTCACTTTCGTCCAACTCAGCCTAACTTAGCTTA 1256
Query 1140 CATGAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATCTGGCTTACAGAGGT 1199
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1257 CATGAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATTTGGCTTACAGAGCT 1316
Query 1200 TGATATGCCTAAGTGCCCTAATCAGGAGGTATACATTGAAGAAATTTTGAGGGAAGCGTA 1259
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||
Sbjct 1317 TGATATGCCTAAGTGCCCTAATCAGGAGATATACATTGAAGAAATTCTGAGGGAAGCATA 1376
Query 1260 TTCGCATCCTGCGGTTAAAGGCATCATAATATTTGCTGGGCCTGAGGTGTCTGGTTTCGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTCGCATCCTGCGGTTAAAGGCATCATAATATTTGCTGGGCCTGAGGTGTCTGGTTTCGA 1436
Query 1320 CAAGCTGACACTTGCGGACAAATACTTCAACAACACTGCAACAGGAGATGTAATTGACAA 1379
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAAGCTAACACTTGCGGACAAAGACTTCAACAACACTGCAACAGGAGATGTAATTGACA- 1495
Query 1380 GTT-GCTCAAGGAGTGGCAGCAATCTTCAGAGATTCCCAAGATTTTCATGACGGATTCCG 1438
||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 1496 GTTTGCTCAAGGAGTGGCAGCAATCTTCAGAGATTCCAAAGATTTTTATGAAGGATTCCG 1555
Query 1439 AGAATGATGAAGAAGAGGTCTCATTGTTGCATGGACATTACAATGTGAATGTAAGTCATC 1498
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 AGAATGACGAAGAAGAGGTCTCATTGTTGCATGGATATTACAATGTGAATGTAAGTCATA 1615
Query 1499 CATGGATGAAGAACATGTCAACCAGTTTCAGCTTGGAGGTAACTAAGGAGATGGGTCAGC 1558
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 CATGGATGAAGAACATGTCCACCAGTTTCAGTTTGGAGGTAACTAAGGAGATGGGTCAGC 1675
Query 1559 GTCAGGTGGTTAGAGTTGTAATTAATGCTTGA 1590
||||||||||||||||||||||||||||||||
Sbjct 1676 GTCAGGTGGTTAGAGTTGTAATTAATGCTTGA 1707
> Ahg353449 jgi|Araly1|353449|fgenesh1_pg.C_scaffold_7000622
Length=1713
Score = 2004 bits (1085), Expect = 0.0
Identities = 1434/1602 (90%), Gaps = 25/1602 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCCTCCACGAAGCAGTGAAACGAAAGGATTATTACAATTTAGCCGCTCTGTCGAA 60
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 121 ATGAAGCCTCCACAAAGCAGTGAAACGCAAGGATTATTACAATTTAGCCGCTCTGTTGAA 180
Query 61 GATGACTCTGATGAAGAATGGAAAATAGATGGAAGTGGATCCATAAGAGAAATGACACAG 120
| |||||||| ||||||||||||||||||||||| |||| |||| ||||||||| |||||
Sbjct 181 GCTGACTCTGGTGAAGAATGGAAAATAGATGGAAATGGAGCCATTAGAGAAATGGCACAG 240
Query 121 AGAATTCAGCTTCACGAAGGAAACATTTACAGCTTCTCTGCTTGGGTGAAGTTGAGAGAA 180
||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 241 AGAATTCAGCTTCACCAAGGAAACATTTATAGCTTCTCTGCTTGTGTGAAATTGAGAGAA 300
Query 181 GGAAACAATAAGAAAGTAGGAGTTGTGTTTAGGACAGAAAATGGAAGATTTGTTCATGGA 240
|||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 301 GGAAACGACAAGAAAGTAGGAGTTGTGTTCAGGACAGAAAATGGAAGACTTGTTCATGGA 360
Query 241 GGTGAAGTTAGGGCAAAGAAAAGATGTTGGACTTTGCTTAAAGGTGGCATTGTGCCAGAT 300
|||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GGTGAAGTTAGGGCAAAGCAAGGATGTTGGACTTTGCTTAAAGGTGGCATTGTACCAGAT 420
Query 301 GTTTCAGGCTCTGTAGATATTTTCTTCGAGAGTGATGACAAAGAAGCAAAGATTTCTGCA 360
|||||||| |||||||||| ||||||||||| || ||| |||||||||||| ||||||
Sbjct 421 TTTTCAGGCCCTGTAGATATATTCTTCGAGAGCGAAAACAGAGAAGCAAAGATCTCTGCA 480
Query 361 AGCGATGTGTCCCTGAAACAGTTCAGTAAACAAGAATGGAAACTGAAACAAGACCAACTA 420
| | |||||| ||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 481 AACAATGTGTTGCTGAAACAGTTTAGCAAAGACGAATGGAAACTGAAACAAGACCAACTT 540
Query 421 ATTGAAAAGATAAGGAAGAGCAAGGTGAGATTTGAAGTAACTTATCAGAACAAAACTGCG 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 541 ATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATCAGAACAAAACCGCG 600
Query 481 GTAAAAGGCGCAGTGATATCTATAGAACAAACCAAACCATCTTTCCTATTAGGCTGCGCA 540
|||||||||||||||||||| || ||||||||||| |||||||||| |||||||| | |
Sbjct 601 GTAAAAGGCGCAGTGATATCCCTAAAACAAACCAAATCATCTTTCCTCTTAGGCTGTGGA 660
Query 541 ATGAATTTCCGGATCCTACAAAGCGAAGGGTACAGAAATTGGTTTGCGTCGCGGTTTAAA 600
|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||
Sbjct 661 ATGAATTTCCGGATCCTACAAAGCCAAGGTTACAGAAAATGGTTTGCGTCGCGGTTCAAA 720
Query 601 ATCACATCCTTCACCAATGAAATGAAATGGTATACAACGGAGAAAGAACGTGGTCACGAG 660
|||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||| |||
Sbjct 721 ATCACATCATTCACTAATGAAATGAAATGGTATGCAACGGAAAAAGCACGTGGTCAAGAG 780
Query 661 AACTACACGGCAGCTGATTCAATGTTAAAATTTGCGGAAGAGAATGGAATATTGGTTAGA 720
|| ||||||| ||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 781 AATTACACGGTAGCCGATTCAATGTTGAAATTTGCGGAAGATAATGGGATATTGGTTAGA 840
Query 721 GGTCATACTGTGTTGTGGGATGACCCTTTAATGCAGCCAACTTGGGTGCCAAAA-ATAGA 779
|||||||| ||||| ||||| |||| ||||||||| | ||||||| |||| ||| |
Sbjct 841 GGTCATACGGTGTTATGGGACAACCCAAGAATGCAGCCTAGTTGGGTG-AAAAAGATA-A 898
Query 780 A-GATCC-AAACGATTTGATGAATGTGACATTGAACCGGATAAACTCGGTTATGACGAGA 837
| |||| || ||| ||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 899 ACAATCCGGAA-GATGTGATGAACGTGACATTGAACCGCATAAACTCGGTTATGAAGAGA 957
Query 838 TACAAAGGGAAGTTAACCGGGTGGGACGTGGTTAATGAGAA-CGTGCATTGGGATTACTT 896
|||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct 958 TACAAAGGGAAGTTAACCGGGTGGGATGTGGTTAACGAGAATC-TGCATTGGGATTACTT 1016
Query 897 TGAGAAAATGCTTGGTGCCAACGCTTCGTCAAGTTTCTACAATTTGGCTTTTAAGCTTGA 956
||||||||||||||||| || ||||| ||| ||||||||||| |||||| |||| ||||
Sbjct 1017 TGAGAAAATGCTTGGTGAAAATGCTTCATCACGTTTCTACAATCTGGCTTCTAAGATTGA 1076
Query 957 TCCTGATGTGACAATGTTCGTTAACGAGTACAACACGATAGAGAACCGTGTAGAGGTTAC 1016
||||||||| | | |||| ||||||||||||||||||||||| |||| | |||| ||||
Sbjct 1077 TCCTGATGTAAGATTGTTTGTTAACGAGTACAACACGATAGAAAACCCTAAAGAGTTTAC 1136
Query 1017 CGCGACGCCGGTTAAGGTGAAGGAGAAGATGGAGGAGATTCTTGCTTACCCAGGTAACAT 1076
||||||||| | ||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1137 TGCGACGCCGATAAAGGTGAAGAAGAAGATGGAGGAGATTCTTGCGTACCCAGGAAACAA 1196
Query 1077 GAACATTAAAGGAGCTATTGGAGCTCAAGGTCACTTTCGTCCAACTCAGCCTAACTTAGC 1136
||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1197 GAACATTAAAGGAGCAATTGGAGCTCAGGGTCACTTTGGTCCAACTCAGCCTAACTTACC 1256
Query 1137 TTACATGAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATCTGGCTTACAGA 1196
|||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 1257 TTACATAAGATCTGCATTGGATACTTTAGGCTCACTACGTTTTCCTATTTGGCTTACAGA 1316
Query 1197 GGTTGATATGCCTAAGTGCCCTAATCAGGAGGTATACATTGAAGAAATTTTGAGGGAAGC 1256
| ||||||| ||||| ||||||||||||| | |||||| ||||| ||| | ||||||||
Sbjct 1317 GCTTGATATACCTAAATGCCCTAATCAGGCGAAATACATGGAAGACATTCTCAGGGAAGC 1376
Query 1257 GTATTCGCATCCTGCGGTTAAAGGCATCATAATATTTGCTGGGCCTGAGGTGTCTGGTTT 1316
||||||||||||||||| ||||||||||||||||| | ||| |||||||| ||||||||
Sbjct 1377 TTATTCGCATCCTGCGGTGAAAGGCATCATAATATTCGGTGGACCTGAGGTCTCTGGTTT 1436
Query 1317 CGACAAGCTGACACTTGCGGACAAATACTTCAACAACACTGC-AACAGGAGATGTAATTG 1375
||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 1437 CGACAAGCTGACACTTGCGGACAAAAACTTCAACAACAC-ACAAACTGGAGATGTAATTG 1495
Query 1376 ACAAGTTGCTCAAGGAGTGGCAGC---AATCTTCAGAGATTCCCAA-GATTTTCATGA-C 1430
| ||||| |||||||||||||| | |||||||||||||| | || |||||||| | |
Sbjct 1496 ATAAGTTACTCAAGGAGTGGCAACAAAAATCTTCAGAGATT-CGAACGATTTTCA-CAGC 1553
Query 1431 GGATTCCGAG-AATGATGAAGAAGAGGTCTCATTGTTGCATGGACATTACAATGTGAATG 1489
||||||| | ||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1554 AGATTCCG-GTAATGAAGAAGAAGAGATCTCATTGCTGCATGGACATTACAATGTGAATG 1612
Query 1490 TAAGTCATCCATGGAT-GAAGAA-CATGTC-AACCAGTTTCAGCTTGGAGGTAACTAAGG 1546
|||||||||||||||| ||| || | |||| ||| |||||||||||||||||||||||||
Sbjct 1613 TAAGTCATCCATGGATAGAA-AATC-TGTCCAAC-AGTTTCAGCTTGGAGGTAACTAAGG 1669
Query 1547 AGATGGGTCAGCGTCAGGTGGTTAGAGTTGTAATTAATGCTT 1588
|||||||||||| ||||||||||||||||| | |||||||||
Sbjct 1670 AGATGGGTCAGCATCAGGTGGTTAGAGTTGGATTTAATGCTT 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5