BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33820.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353449 jgi|Araly1|353449|fgenesh1_pg.C_scaffold_7000622 2579 0.0
Ahg353450 jgi|Araly1|353450|fgenesh1_pg.C_scaffold_7000623 2100 0.0
> Ahg353449 jgi|Araly1|353449|fgenesh1_pg.C_scaffold_7000622
Length=1713
Score = 2579 bits (1396), Expect = 0.0
Identities = 1611/1716 (94%), Gaps = 10/1716 (1%)
Strand=Plus/Plus
Query 11 ATGAACAGCATCAAGAATGGCTTCTTCCTCTGCATGATTTTTCTTCTCTGGTGCCATGTG 70
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||| | ||||
Sbjct 1 ATGAACAGTATCAAGAATGGCTTCTTCCTCTGCATGCTTTCTCTTCTCTGGTGTCTTGTG 60
Query 71 GATTCAGGGGTTTCCATC-GATCCTTTCTCCCATAGCCACTCTCTCAACACAGAGTGTGT 129
|||||| || |||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GATTCACGGATTTCCA-CTGATCCTTTCTCCCATAGCCACTCTCTCAATACAGAGTGTGT 119
Query 130 GATGAAGCCTCCACGAAGCAGTGAAACGAAAGGATTATTACAATTTAGCCGCTCTCTCGA 189
||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 120 AATGAAGCCTCCACAAAGCAGTGAAACGCAAGGATTATTACAATTTAGCCGCTCTGTTGA 179
Query 190 AGATGACTCTGATGAAGAATGGAAAATTGATGGAAATGGATTCATTAGAGAAATGGCACA 249
|| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 180 AGCTGACTCTGGTGAAGAATGGAAAATAGATGGAAATGGAGCCATTAGAGAAATGGCACA 239
Query 250 GAGAATTCAGCTTCACCAAGGAAATATTTACAGCTTCTCTGCTTGGGTGAAATTGAGAGA 309
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 240 GAGAATTCAGCTTCACCAAGGAAACATTTATAGCTTCTCTGCTTGTGTGAAATTGAGAGA 299
Query 310 AGGAAACGACAAGAAAGTAGGAGTTGTGTTCAGGACAGAAAATGGAAGACTTGTTCATGG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGGAAACGACAAGAAAGTAGGAGTTGTGTTCAGGACAGAAAATGGAAGACTTGTTCATGG 359
Query 370 AGGTGAAGTTAGGGCAAATCAAGAATGTTGGACTTTGCTTAAAGGTGGCATTGTACCAGA 429
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGTGAAGTTAGGGCAAAGCAAGGATGTTGGACTTTGCTTAAAGGTGGCATTGTACCAGA 419
Query 430 TTTTTCAGGCCCTGTAGATATATTCTTCGAGAGTGAAAACAGAGGAGCAAAGATCTCTGC 489
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 420 TTTTTCAGGCCCTGTAGATATATTCTTCGAGAGCGAAAACAGAGAAGCAAAGATCTCTGC 479
Query 490 ACACAATGTGTTGCTAAAACAGTTTAGCAAAGAAGAATGGAAACTGAAACAGGACCAACT 549
| ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 AAACAATGTGTTGCTGAAACAGTTTAGCAAAGACGAATGGAAACTGAAACAAGACCAACT 539
Query 550 TATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATGAGAACAAAACCGC 609
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATCAGAACAAAACCGC 599
Query 610 AGTAAAAGGCGTAGTGATATCACTAAAACAAACCAAATCATCTTTTCTCTTAGGCTGTGG 669
|||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GGTAAAAGGCGCAGTGATATCCCTAAAACAAACCAAATCATCTTTCCTCTTAGGCTGTGG 659
Query 670 AATGAATTTCCGGATCCTACAAAGCCAAGGGTACAGAAAATGGTTTGCGTCGCGGTTCAA 729
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AATGAATTTCCGGATCCTACAAAGCCAAGGTTACAGAAAATGGTTTGCGTCGCGGTTCAA 719
Query 730 AATCACTTCATTCACTAATGAAATGAAATGGTATGCAACGGAGAAAGCACGAGGTCAAGA 789
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 720 AATCACATCATTCACTAATGAAATGAAATGGTATGCAACGGAAAAAGCACGTGGTCAAGA 779
Query 790 GAACTACACGGTAGCCGATTCAATGCTGAAATTTGCGGAAGATAATGGGATATTGGTTAG 849
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 GAATTACACGGTAGCCGATTCAATGTTGAAATTTGCGGAAGATAATGGGATATTGGTTAG 839
Query 850 AGGTCATACAGTGTTATGGGACAACCCAAAAATGCAGCCTAGTTGGGTGAAAAATATAAA 909
||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 840 AGGTCATACGGTGTTATGGGACAACCCAAGAATGCAGCCTAGTTGGGTGAAAAAGATAAA 899
Query 910 -AGATCC-GAACGATGTGATGAACGTGACATTGAACAGGATCAACTCGGTTATGAAGAGA 967
| |||| ||| |||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 900 CA-ATCCGGAA-GATGTGATGAACGTGACATTGAACCGCATAAACTCGGTTATGAAGAGA 957
Query 968 TACAAAGGGAAGTTAACCGGGTGGGATGTGGTTAACGAGAATCTGCATTGGGATTACTTT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACAAAGGGAAGTTAACCGGGTGGGATGTGGTTAACGAGAATCTGCATTGGGATTACTTT 1017
Query 1028 GAGAAAATGCTTGGTGCAAACGCTTCGA-CAAGTTTCTACAATCTGGCTTTTAAGATTGA 1086
|||||||||||||||| ||| ||||| | || |||||||||||||||||| |||||||||
Sbjct 1018 GAGAAAATGCTTGGTGAAAATGCTTC-ATCACGTTTCTACAATCTGGCTTCTAAGATTGA 1076
Query 1087 TCCTGATGTGAGATTGTTTGTTAACGAGTACAATACGATAGAAAACACTAAAGAGTTTAC 1146
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1077 TCCTGATGTAAGATTGTTTGTTAACGAGTACAACACGATAGAAAACCCTAAAGAGTTTAC 1136
Query 1147 TGCGACGCCGATAAAGGTGAAGAAGATGATGGAGGAAATTCTCGCCTATCCAGGAAACAA 1206
|||||||||||||||||||||||||| ||||||||| ||||| || || |||||||||||
Sbjct 1137 TGCGACGCCGATAAAGGTGAAGAAGAAGATGGAGGAGATTCTTGCGTACCCAGGAAACAA 1196
Query 1207 GAACATGAAAGGAGCAATTGGAGCTCAGGGTCACTTTGGTCCAACTCAGCCTAACTTAGC 1266
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1197 GAACATTAAAGGAGCAATTGGAGCTCAGGGTCACTTTGGTCCAACTCAGCCTAACTTACC 1256
Query 1267 TTACATAAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATTTGGCTTACAGA 1326
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1257 TTACATAAGATCTGCATTGGATACTTTAGGCTCACTACGTTTTCCTATTTGGCTTACAGA 1316
Query 1327 GGTTGATATGCCTAAATGCCCTAATCAGGCGCAATACGTGGAAGACATTCTCAGGGAAGC 1386
| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1317 GCTTGATATACCTAAATGCCCTAATCAGGCGAAATACATGGAAGACATTCTCAGGGAAGC 1376
Query 1387 TTACTCGCATCCTGCGGTGAAAGGTATCATAATATTTGGTGGACCTGAGGTGTCTGGTTT 1446
||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1377 TTATTCGCATCCTGCGGTGAAAGGCATCATAATATTCGGTGGACCTGAGGTCTCTGGTTT 1436
Query 1447 TGACAAGCTGACACTTGCAGACAAAGACTTCAACAACACACAAACGGGAGATGTAATTGA 1506
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1437 CGACAAGCTGACACTTGCGGACAAAAACTTCAACAACACACAAACTGGAGATGTAATTGA 1496
Query 1507 TAAGTTGCTCAAGGAGTGGCAACAAAAATCTTCAGAGATTCAAACGAATTTCACAGCAGA 1566
|||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1497 TAAGTTACTCAAGGAGTGGCAACAAAAATCTTCAGAGATTCGAACGATTTTCACAGCAGA 1556
Query 1567 TTCTGATAATGAAGAGGAAGAGGTCTCATTGTTGCATGGACATTATAATGTGAATGTAAG 1626
||| | ||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 1557 TTCCGGTAATGAAGAAGAAGAGATCTCATTGCTGCATGGACATTACAATGTGAATGTAAG 1616
Query 1627 CCATCCATGGATAGCAAACCTATCCACCAGTTTCAGCTTGGAGGTAACTAAGGAGATGGA 1686
||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1617 TCATCCATGGATAGAAAATCTGTCCAACAGTTTCAGCTTGGAGGTAACTAAGGAGATGGG 1676
Query 1687 TCAAG-ACCAGGTGATTAGAGTCGTAATTAGTGCTT 1721
||| | | |||||| ||||||| | | ||| |||||
Sbjct 1677 TCA-GCATCAGGTGGTTAGAGTTGGATTTAATGCTT 1711
> Ahg353450 jgi|Araly1|353450|fgenesh1_pg.C_scaffold_7000623
Length=1707
Score = 2100 bits (1137), Expect = 0.0
Identities = 1535/1726 (89%), Gaps = 32/1726 (2%)
Strand=Plus/Plus
Query 11 ATGAACAGCATCAAGAATGGCTTCTTCCTCTGCATGATTTTTCTTCTCTGGTGCCATGTG 70
||||| | |||||| ||||||||||||||||||||| |||| || |||||||| ||||
Sbjct 1 ATGAAGAACATCAACAATGGCTTCTTCCTCTGCATGCTTTTACTCCTCTGGTGTTTTGTG 60
Query 71 GATTCAGGGG-TTTCCATCGATCCTTTCTCCCATAGCCACTCTCTCAACACAGAGTGTGT 129
|||| |||| ||||||| |||||||||||||| ||| |||||||||| |||||||||||
Sbjct 61 CATTC-GGGGATTTCCATTGATCCTTTCTCCCAAAGCGACTCTCTCAAAACAGAGTGTGT 119
Query 130 GATGAAGCCTCCACGAAGCAGTGAAACGAAAGGATTATTACAATTTAGCCGCTCTCTCGA 189
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 120 AATGAAGCCTCCACGAAGCAGTGAAACGCAAGGATTATTACAATTTAGCCGTTCTGTCGA 179
Query 190 AGATGACTCTGATGAAGAATGGAAAATTGATGGAAATGGATTCATTAGAGAAATGGCACA 249
|| |||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||||
Sbjct 180 AGCTGACTCTGATGAAGAATGGAAAATAGATGAAAATGGATCCATTAGAGAAATGACACA 239
Query 250 GAGAATTCAGCTTCACCAAGGAAATATTTACAGCTTCTCTGCTTGGGTGAAATTGAGAGA 309
||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 240 GAGAATTCAGCTTCAACAAGGAAACATCTACAGCTTCTCCGCTTGGGTGAAGTTGAGAGA 299
Query 310 AGGAAACGACAAGAAAGTAGGAGTTGTGTTCAGGACAGAAAATGGAAGACTTGTTCATGG 369
||||||| | ||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 300 AGGAAACAAGAAGAAAGTAGGAGTTGTATTCAGGACAGAAAATGG-AG--TTGTTCATGG 356
Query 370 AGGTGAAGTTAGGGCAAATCAAGAATGTTGGACTTTGCTTAAAGGTGGCATTGTACCAGA 429
|||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||
Sbjct 357 AGGTGAAGTTAGGGCAAAGCAAGGATGTTGGACTTTACTTAAAGGTGGCATTGTGCCAGA 416
Query 430 TTTTTCAGGCCCTGTAGATATATTCTTCGAGAGTGAAAACAGAGGAGCAAAGATCTCTGC 489
|||||||||| |||||||||| |||||||||| ||| ||| || ||||||||| |||||
Sbjct 417 TTTTTCAGGCTCTGTAGATATTTTCTTCGAGACTGATGACAAAGAAGCAAAGATTTCTGC 476
Query 490 ACA-CAATGTGTTGCTAAAACAGTTTAGCAAAGAAGAATGGAAACTGAAACAGGACCAAC 548
| | | |||||| ||| |||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 477 A-AGCGATGTGTCGCTGAAACAGTTCAGCAAAGAAGAATGGAAACTGAAACAAGACCGAC 535
Query 549 TTATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATGAGAACAAAACCG 608
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 536 TTATTGAAAAGATAAGGAAGAGCAAAGTGAGATTTGAAGTAACTTATCAGAACAAAACTG 595
Query 609 CAGTAAAAGGCGTAGTGATAT-CACTAAAACAAACCAAATCATCTTTTCTCTTAGGCTGT 667
| |||||||||| |||||||| || || ||||||||||| ||||||| |||||||| ||
Sbjct 596 CGGTAAAAGGCGCAGTGATATCCA-TAGAACAAACCAAACCATCTTTCCTCTTAGGGTGC 654
Query 668 GGAATGAATTTCCGGATCCTACAAAGCCAAGGGTACAGAAAATGGTTTGCGTCGCGGTTC 727
| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 655 GCAATGAATTTCCGGATCCTACAAAGCGAAGGGTACAGAAATTGGTTTGCGTCGCGGTTT 714
Query 728 AAAATCACTTCATTCACTAATGAAATGAAATGGTATGCAACGGAGAAAGCACGAGGTCAA 787
|||||||| || ||||| |||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 715 AAAATCACATCCTTCACCAATGAAATGAAATGGTATACAACGGAGAAAGAACGTGGTCAA 774
Query 788 GAGAACTACACGGTAGCCGATTCAATGCTGAAATTTGCGGAAGATAATGGGATATTGGTT 847
||||||||||||| ||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 775 GAGAACTACACGGCAGCTGACTCAATGCTGAAATTTGCGGAAGAGAATGGAATATTGGTT 834
Query 848 AGAGGTCATACAGTGTTATGGGACAACCCAAAAATGCAGCCTAGTTGGGTGA-AAAATAT 906
||||||||||| ||| | |||||| |||||| |||||| || |||||||| | |||| ||
Sbjct 835 AGAGGTCATACTGTGCTGTGGGACGACCCAATAATGCAACCAAGTTGGGT-ACAAAAAAT 893
Query 907 AAAAGATCCGAACGATGTGATGAACGTGACATTGAACAGGATCAACTCGGTTATGAAGAG 966
|||||| || || ||| |||||||||||||||||||| |||| |||||||| |||| |||
Sbjct 894 AAAAGACCCAAATGATTTGATGAACGTGACATTGAACCGGATAAACTCGGTAATGACGAG 953
Query 967 ATACAAAGGGAAGTTAACCGGGTGGGATGTGGTTAACGAGAATC-TGCATTGGGATTACT 1025
|||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||
Sbjct 954 ATACAAAGGGAAGTTAACCGGGTGGGATGTGGTTAATGAGAA-CGTGCACTGGGATTACT 1012
Query 1026 TTGAGAAAATGCTTGGTGCAAACGCTTCGACAAGTTTCTACAATCTGGCTTTTAAGATTG 1085
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |
Sbjct 1013 TTGAGAAAATGCTTGGTGCAAACGCTTCGTCAAGTTTCTACAATTTGGCTTTTAAGCTAG 1072
Query 1086 ATCCTGATGTGAGATTGTTTGTTAACGAGTACAATACGATAGAAAACAC-TAAAGAGTTT 1144
|||||||| ||| |||||| |||||||||||||| |||||||| ||| | | |||| ||
Sbjct 1073 ATCCTGATTTGACATTGTTCGTTAACGAGTACAACACGATAGAGAAC-CGTGTAGAGGTT 1131
Query 1145 ACTGCGACGCCGATAAAGGTGAAGAAGATGATGGAGGAAATTCTCGCCTATCCAGGAAAC 1204
|| ||||||||| | ||||||||| ||| ||||||||| ||||| || || ||||| |||
Sbjct 1132 ACCGCGACGCCGGTTAAGGTGAAGGAGAAGATGGAGGAGATTCTTGCATACCCAGGTAAC 1191
Query 1205 AAGAACATGAAAGGAGCAATTGGAGCTCAGGGTCACTTTGGTCCAACTCAGCCTAACTTA 1264
| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 ATGAACATTAAAGGAGCAATTGGAGCTCAGGGTCACTTTCGTCCAACTCAGCCTAACTTA 1251
Query 1265 GCTTACATAAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATTTGGCTTACA 1324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCTTACATGAGATCTGCATTGGATACTTTAGGCTCACTAGGTTTGCCTATTTGGCTTACA 1311
Query 1325 GAGGTTGATATGCCTAAATGCCCTAATCAGGCGCA-ATACGTGGAAGACATTCTCAGGGA 1383
||| ||||||||||||| ||||||||||||| | | |||| | ||||| ||||| |||||
Sbjct 1312 GAGCTTGATATGCCTAAGTGCCCTAATCAGGAG-ATATACATTGAAGAAATTCTGAGGGA 1370
Query 1384 AGCTTACTCGCATCCTGCGGTGAAAGGTATCATAATATTTGGTGGACCTGAGGTGTCTGG 1443
||| || |||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||
Sbjct 1371 AGCATATTCGCATCCTGCGGTTAAAGGCATCATAATATTTGCTGGGCCTGAGGTGTCTGG 1430
Query 1444 TTTTGACAAGCTGACACTTGCAGACAAAGACTTCAACAACACA-CAAACGGGAGATGTAA 1502
||| |||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||
Sbjct 1431 TTTCGACAAGCTAACACTTGCGGACAAAGACTTCAACAACACTGCAA-CAGGAGATGTAA 1489
Query 1503 TTGATAAGTT-GCTCAAGGAGTGGCAACAAAAATCTTCAGAGATTC-AAACGAATTTCAC 1560
|||| | ||| ||||||||||||||| ||| ||||||||||||| ||| || ||| |
Sbjct 1490 TTGACA-GTTTGCTCAAGGAGTGGCAGCAA---TCTTCAGAGATTCCAAA-GATTTTTAT 1544
Query 1561 AGCAG-ATTCTGATAATGAAGAGGAAGAGGTCTCATTGTTGCATGGACATTATAATGTGA 1619
| || |||| || ||||| || |||||||||||||||||||||||| |||| |||||||
Sbjct 1545 -GAAGGATTCCGAGAATGACGAAGAAGAGGTCTCATTGTTGCATGGATATTACAATGTGA 1603
Query 1620 ATGTAAGCCATCCATGGATAGCA-AACCTATCCACCAGTTTCAGCTTGGAGGTAACTAAG 1678
||||||| ||| ||||||| | | ||| | |||||||||||||| |||||||||||||||
Sbjct 1604 ATGTAAGTCATACATGGAT-GAAGAACATGTCCACCAGTTTCAGTTTGGAGGTAACTAAG 1662
Query 1679 GAGATGGATCAA-GACCAGGTGATTAGAGTCGTAATTAGTGCTTGA 1723
||||||| ||| | | ||||| ||||||| ||||||| |||||||
Sbjct 1663 GAGATGGGTCAGCGTC-AGGTGGTTAGAGTTGTAATTAATGCTTGA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5