BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33830.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491296 jgi|Araly1|491296|fgenesh2_kg.7__729__AT4G33830.1 2366 0.0
Ahg491295 jgi|Araly1|491295|fgenesh2_kg.7__728__AT4G33840.1 1995 0.0
Ahg944537 jgi|Araly1|944537|scaffold_700766.1 1531 0.0
> Ahg491296 jgi|Araly1|491296|fgenesh2_kg.7__729__AT4G33830.1
Length=1776
Score = 2366 bits (1281), Expect = 0.0
Identities = 1514/1627 (93%), Gaps = 14/1627 (1%)
Strand=Plus/Plus
Query 112 CCTTATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGATATGCAAAATGGTTCC 171
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 157 CCTTATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACCTGCAAAATGGTTCA 216
Query 172 CAAGGCTGGTCACAGTTCGAAAATGCAAAAGTCAATTTCAGAGAATTTGGAGGCAATAAG 231
| ||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||
Sbjct 217 CTAGGCTGGTCACAGTTTGGAAATGCCAAAGTCGATTTCAGAGAATTTGGAGGCAATAAG 276
Query 232 TTTGTTGTTGCCACACAGAGAAATCAATCTTCTGACAGCGTCTCACAGAAGGTTTACTTG 291
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 277 TTTGTTGTTGCCACACAGAGGAATCAATCTTCTGACAGCGTCTCACAGATGGTTTACTTG 336
Query 292 GAAAAAGGAATTCTCTACACATTCTCTGCTTGGTTACAAGTAAGCACAGGAAAAGCTCCT 351
|||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||
Sbjct 337 GAAAAAGGAATTCTTTACACTTTCTCGGCTTGGTTACAAGTAAGCATAGGAAAATCTCCG 396
Query 352 GTGAGTGCCGTTTTCAAGAA-GAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGA 410
||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 397 GTGAGCGCCGTTTTCAA-AATAAATGGTGAAGATAAGCATGCCGGTTCGGTTGTTGCTGA 455
Query 411 ATCCAAATGTTGGTCCATGCTGAAAGGTGGCCTCACTGTTGATGAATCTGGTCCTGCTGA 470
||||| ||| ||||| ||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 456 ATCCAGATGCTGGTCGATGCTTAAAGGTGGTATCACTGTTGATGAATCTGGTCCTGCCGA 515
Query 471 ACTCTTCGTCGAGAGCGAGGACACAACAGTTGAGATTTGGGTTGATAGTGTCTCTTTGCA 530
|||| | | ||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 516 TCTCTACTTTGAGAGCGAGGACACAGCGGTTGAGATTTGGGTTGATAGCGTCTCTTTGCA 575
Query 531 ACCATTCACACAAGACGAATGGAACGCTCACCAGGAGCAGAGCATTGACAATTCAAGAAA 590
||||||||| ||| | || ||||||||||||||||| ||||||||||| || |||||||
Sbjct 576 ACCATTCACCCAAAAAGAGTGGAACGCTCACCAGGAACAGAGCATTGAGAAGGCAAGAAA 635
Query 591 AGGT-CCTGTCAGAATCAGAGTCGTCAATAACAAAGGCGAGAAGATACCAAACGCATCCA 649
|||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 636 AGGTGCC-GTGAGAATCAGAGTCGTGAATAACAAAGGCGAGAAGATACCAAACGCATCCA 694
Query 650 TTACCATAGAACAGAAGC-GACTCGGATTCCCATTCGGGAGCGCTGTAGCACAGAACATA 708
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TTACCATAGTACAGAA-CAGACTCGGATTCCCATTCGGGAGCGCTGTAGCACAGAACATA 753
Query 709 CTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTCACCGTGACTACATTCGAA 768
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 754 CTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTCACCGTGACAACATTCGAA 813
Query 769 AACGAGATGAAATGGTACAGCACAGAATCTGTAAGAGGCATAGAGAATTACAC-AGTCGC 827
||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||
Sbjct 814 AACGAGATGAAATGGTACAGCACGGAATCTGTAAGAGGCATAGAGAATTATACGA-TCGC 872
Query 828 GGACGCAATGTTGAGATTCTTCAACCAGCATGGCATTGCTGTACGTGGACACAATGTTGT 887
|||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 873 GGACGCGATGTTGAGATTCTTCAAGCAGCACGACATTGCTGTACGTGGACACAATGTTGT 932
Query 888 ATGGGACCACCCTAAGTATCAATCTAAATGGGTTACTTCTCTGTCACGTAACGATCTATA 947
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 933 ATGGGACCACCCTAAGTACCAATCTAAATGGGTTACTTCTCTGTCACGTAACGATATCTA 992
Query 948 CAATGCAGTAAAACGAAGGGTTTTCTCGGTGGTCTCGCGATACAAAGGCCAGCTTGCCGG 1007
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 993 CAATGCAGTGAAACGAAGGGTTTTCTCTGTGGTCTCGCGATACAAAGGCCAGCTTGCTGG 1052
Query 1008 TTGGGATGTTGTGAATGAGAATCTCCATCACTCCTTCTTTGAGAGCAAGTTTGGTCCTAA 1067
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1053 TTGGGATGTTGTGAATGAGAATCTGCATCACTCCTTCTTTGAGAGTAAGTTTGGTCCTAA 1112
Query 1068 CGCCTCTAATAACATCTTCGCGATGGCACATGCCATTGATCCAAGCACAACAATGTTTAT 1127
||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1113 CGCCTCTAATAACATCTTCGCAATGGCGCATGCCATCGATCCAAGGACAACAATGTTCAT 1172
Query 1128 GAATGAATTCTATACATTAGAGGACCCTACAGATCTGAAAGCGAGTCCAGCGAAGTATTT 1187
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1173 GAATGAATTCTATACATTAGAGGACCCTACGGATCTGAAAGCGAGTCCAGCAAAGTATTT 1232
Query 1188 GGAGAAGCTTAGGGAGCTTCAATCTATTCGGGTTCGCGGAAACATTCCATTGGGGATCGG 1247
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1233 GCAGAAGCTTAGGGAGCTTCAATCTATTCGGGTTCGTGGAAACATTCCATTGGGGATCGG 1292
Query 1248 TCTTGAGTCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTCT 1307
|||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1293 TCTTGAGTCTCATTTCAGTACTCCTAACATTCCGTACATGAGATCAGGTCTTGATATTCT 1352
Query 1308 TGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGATCGACGTTAAAGCTCCTTCC-AGTG 1366
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1353 TGGCGCCACTGGTTTGCCTATTTGGCTCACTGAGATCGACGTTAAAGCTCCTTCCGA-TG 1411
Query 1367 ATCAGGCCAAGTATTTTGAGCAAGTCCTAAGAGAGGGACATGCGCATCCGCATGTGAAAG 1426
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1412 TTCAGGCCAAGTATTTTGAGCAAGTCCTAAGGGAAGGACATGCGCATCCGCATGTGAAAG 1471
Query 1427 GAATGGTGACGTGGACAGCTTATGCACCAAATTGCTACCACATGTGCCTCACCGATGGAA 1486
||||||||| ||||||||||||| |||||| ||||||||| ||||||||||| |||||||
Sbjct 1472 GAATGGTGATGTGGACAGCTTATTCACCAAGTTGCTACCATATGTGCCTCACTGATGGAA 1531
Query 1487 ACTTCAAGAATCTACCAACTGGAGATGTTGTGGACAAGCTTATACGTGAATGGGGAGGGC 1546
|||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1532 ACTTCAAGAACCTACCCACTGGAGACGTTGTGGACAAGCTGCTACGTGAATGGGGAGGGC 1591
Query 1547 TACGCAGCCAAACTACTGAAGTCACCGATGCTGATGGATTCTTTGAAGCTTCACTCTTTC 1606
|||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1592 TACGTAGCCAAACCACTGGAGTCACTGATGCTGATGGATTCTTTGAAGCTTCACTCTTTC 1651
Query 1607 ATGGTGACTATGATCTCAATATTTCTCATCCTCTCACCAATTCAAGCGTTTCAC-ACAAC 1665
|||||||||||||||||||||||||||| |||||| ||||||||| | || | |||||
Sbjct 1652 ATGGTGACTATGATCTCAATATTTCTCACCCTCTCGCCAATTCAAAAGCTT-ATTACAAC 1710
Query 1666 TTTACGTTGACTTCTGATGACTCCTCTTTACATACCCAACCATCAACTTTTGTCTTT-CG 1724
|||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
Sbjct 1711 TTTACGTTGACTTCTGATGACTCCTCTTCACAGACCCAACCATCAATTTTTGTCTTTTC- 1769
Query 1725 TGTTTGA 1731
|||||||
Sbjct 1770 TGTTTGA 1776
> Ahg491295 jgi|Araly1|491295|fgenesh2_kg.7__728__AT4G33840.1
Length=1930
Score = 1995 bits (1080), Expect = 0.0
Identities = 1535/1752 (88%), Gaps = 42/1752 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCTTCTACTACTGCTGCCTCTTGCTTTCTGCTGTCTTTCTCTATCAAGGTGTGAA 60
|||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 8 ATGAAGCTTCTACTGCTGCTG---CTTGCCTTCTGCTGTCTATCTCTATCAAGGTGTGAA 64
Query 61 G-AAATTCTCGTCCCTTATGACTACTCGGCAACAATAGAGTGTCTAGAGATTCCTTATAA 119
| ||| || |||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 65 GAAAAATC-CGTCCCTTATGATTACTCGGCAACAATAGAGTGTCTGGATACCCCTTATAA 123
Query 120 ACCACAGTACAATGGAGGGATCATCGTGAATCCTGATATGCAAAATGGTTCCCAAGGCTG 179
||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 124 ACCACAGTACAGTGGAGGGATCATCGTGAATCCTGACCTGCAAAATGGTTCACTAGGCTG 183
Query 180 GTCACAGTTCGAAAATGCAAAAGTCAATTTCAGAGAATTTGGAGGCAATAAGTTTGTTGT 239
|||||| |||| |||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 184 GTCACAATTCGGAAATGCCAAAGTTGATTTCAGAGGGTTTGGAGGCAATAAGTTTGTTGT 243
Query 240 TGCCACACAGAGAAATCAATCTTCTGACAGCGTCTCACAGAAGGTTTACTTGGAAAAAGG 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TGCCACACAGAGGAATCAATCTTCTGACAGCGTCTCACAGAAGGTTTACTTGGAAAAAGG 303
Query 300 AATTCTCTACACATTCTCTGCTTGGTTACAAGTAAGCACAGGAAAAGCTCCTGTGAGTGC 359
|||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 304 AATTCTCTACACTTTCTCGGCTTGGTTACAAGTAAGCAGAGGAAAAGCTCCCGTGAGTGC 363
Query 360 CGTTTTCAAGAAGAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGAATCCAAATG 419
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 364 CGTTTTCAAGAAAAATGGTGAATATAAGTATGCCGGTTCTGTTGTTGCTGAATCCAAATG 423
Query 420 TTGGTCCATGCTGAAAGGTGGCCTCACTGTTGATGAATCTGGTCCTGCTGAACTCTTCGT 479
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| | |
Sbjct 424 CTGGTCCATGCTCAAAGGTGGTCTCACTGTTGATGAATCTGGTCCTGCTGATCTCTACTT 483
Query 480 CGAGAGCGAGGACACAACAGTTGAGATTTGGGTTGATAGTGTCTCTTTGCAACCATTCAC 539
||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 484 TGAGAGCGAGAACACAACAGTTGACATTTGGGTTGATAGCGTCTCTTTGCAACCTTTCAC 543
Query 540 ACAAGACGAATGGAACGCTCACCAGGAGCAGAGCATTGACAATTCAAGAAAAGG-TCCTG 598
|||||| || ||| || ||||||| || |||||||||||||| |||||||||| ||| |
Sbjct 544 ACAAGAAGAGTGGGACTCTCACCACGAACAGAGCATTGACAAAGCAAGAAAAGGTTCC-G 602
Query 599 TCAGAATCAGAGTCGTCAATAACAAAGGCGAGAAGATACCAAACGCATCCATTA-CCATA 657
| || ||||||||| | |||||||||||||||| ||||||||||||| ||| || |||||
Sbjct 603 TGAGGATCAGAGTCATGAATAACAAAGGCGAGACGATACCAAACGCAACCA-TATCCATA 661
Query 658 GAACAGAAGCGACTCGGATTCCCATTCGGGAGCGCTGTAGCACAGAACATACTTGGGAAT 717
||||||||| ||| ||||||||||||||| |||| |||| | | |||||||||||||||
Sbjct 662 GAACAGAAGAAACTTGGATTCCCATTCGGGTGCGCAGTAGAAAACAACATACTTGGGAAT 721
Query 718 CAAGCATACCAAAACTGGTTCACTCAAAGATTCACCGTGACTACATTCGAAAACGAGATG 777
|||||||||||||||||||||||||| ||||| |||||||| || |||| |||||||||
Sbjct 722 CAAGCATACCAAAACTGGTTCACTCAGAGATTTACCGTGACAACTTTCGGGAACGAGATG 781
Query 778 AAATGGTACAGCACAGAATCTGTAAGAGG-CATAGAGAATTACACAGTC-GCGGACGCAA 835
|||||||||||||||||| ||||||| || |||| ||||| | | | || ||||| |
Sbjct 782 AAATGGTACAGCACAGAAAGAATAAGAGGCCA-AGAGGATTACTC-GACAGCTGACGCGA 839
Query 836 TGTTGAGATTCTTCAACCAGCATGGCATTGCTGTACGTGGACACAATGTTGTATGGGACC 895
|||| || |||||||| || || || |||||||||||||| |||||| || |||||||
Sbjct 840 TGTTTAGTTTCTTCAAGCAACACGGGATTGCTGTACGTGGGCACAATATTTTATGGGATG 899
Query 896 A-CCCTAAGTATCAATCTAAATGGGTTACTTCTCTGTCACGTAACGATCTATACAATGCA 954
| ||| | ||||||| || |||||| | ||||||||| ||| ||||||| ||||| ||
Sbjct 900 ATCCC-AGGTATCAACCTGGATGGGTGAATTCTCTGTCCCGTGACGATCTCTACAACGCC 958
Query 955 GTAAAACGAAGGGTTTTCTCGGTGGTCTCGCGATACAAAGGCCAGCTTGCCGGTTGGGAT 1014
|| |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||
Sbjct 959 GTGAAACGAAGGGTTTTCTCGGTGGTCTCACGATACAAAGGTCAGCTTACTGGTTGGGAT 1018
Query 1015 GTTGTGAATGAGAATCTCCATCACTCCTTCTTTGAGAGCAAGTTTGGTCCTAACGCCTCT 1074
||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1019 GTTGTGAATGAGAATCTCCATTTCTCCTTCTTTGAGAGCAAGTTGGGTCCTAAAGCCTCT 1078
Query 1075 AATAACATC-TTCGCGATGGCACATGCCATT-GATCCAAGCACAACAATGTTTATGAATG 1132
|||||| | | ||| ||||| |||||| || |||||| | ||||||||||| ||||||
Sbjct 1079 TATAACA-CATACGCAATGGCCCATGCC-TTCGATCCACGGACAACAATGTTCCTGAATG 1136
Query 1133 AATTCT-ATACATTAGAGGACCCTACA-GATCTGAA-AGCGAGTCCAGCGAA-GTATTT- 1187
|| | | |||| |||||| | |||| | ||| | || | |||||||| || ||||||
Sbjct 1137 AA-TATAATACGTTAGAGCAACCTA-ATGAT-TTAACTTCTAGTCCAGC-AAGGTATTTG 1192
Query 1188 GGAGAAGCTTAGGGAGCTTCAATCTATTCGGGTTCG-CGGAAACATTCCATTGGGGATCG 1246
||| |||||||||||||||||||||||||||||| | |||||| ||||| || ||||| |
Sbjct 1193 GGA-AAGCTTAGGGAGCTTCAATCTATTCGGGTT-GCCGGAAAGATTCCGTTAGGGATAG 1250
Query 1247 GTCTTGAGTCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTC 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GTCTTGAGTCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTC 1310
Query 1307 TTGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGATCGACGTTAAAGCTCCTTCCAGTG 1366
||||||||||||||||||||||||||||||||||| | |||||| | || ||| ||| ||
Sbjct 1311 TTGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGGTAGACGTTGATGCGCCTCCCAATG 1370
Query 1367 ATCAGG-CCAAGTATTTTGAGCAAGTCCTAAGAGAGGGACATGCGCATCCGCATGTGAAA 1425
|| || |||||||||| |||||||| ||||| || || |||||||||||| | ||||||
Sbjct 1371 -TCCGGTCCAAGTATTTCGAGCAAGTTCTAAGGGAAGGCCATGCGCATCCGAAGGTGAAA 1429
Query 1426 GGAATGGTGACGTGGACAGCTTATGCACCAA-A--TTGCTACCACA-TGTGCCTCACCGA 1481
|||||||||| |||||||| |||| ||||| | ||||||| | | |||||||||||||
Sbjct 1430 GGAATGGTGATGTGGACAGGTTATTCACCATCAGGTTGCTAC-AGAATGTGCCTCACCGA 1488
Query 1482 TGGAAACTTCAAGAATCTACCAACTGGAGATGTTGTGGACAAGCTTATACGTGAATGGGG 1541
||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1489 TGGAAACTTCAAGAACCTACCCACTGGAGATGTCGTGGACAAGCTTCTACGTGAATGGGG 1548
Query 1542 AGGGCTACGCAGCCAAACTACTGAAGTCACCGATGCTGATGGATTCTTTGAAGCTTCACT 1601
|||||| ||||||||||| || | ||||| |||||| |||| |||||||||||||||||
Sbjct 1549 AGGGCTTCGCAGCCAAACCACCGGTGTCACTGATGCTAATGGGTTCTTTGAAGCTTCACT 1608
Query 1602 CTTTCATGGTGACTATGATCTCAATATTTCTCATCCTCTCACCAATTCAAGCGT-TTCAC 1660
||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||
Sbjct 1609 CTTTCATGGTGACTATGATCTTAATATATCTCATCCTCTCACCAATTCAAAA-TCTTCTT 1667
Query 1661 ACAACTTTACGTTGACTTCTGATGACTCCTCTTTACATACCCAACCATCAACT-TTTGTC 1719
||||||| ||||||||| |||||||||||||| | | ||||||||||| || ||||||
Sbjct 1668 ACAACTTCACGTTGACTCCTGATGACTCCTCTCCAAAGACCCAACCATCT-CTATTTGTC 1726
Query 1720 TTTCGTGTTTGA 1731
||||| |||||
Sbjct 1727 GTTCGTATTTGA 1738
> Ahg944537 jgi|Araly1|944537|scaffold_700766.1
Length=1777
Score = 1531 bits (829), Expect = 0.0
Identities = 1451/1747 (83%), Gaps = 60/1747 (3%)
Strand=Plus/Plus
Query 16 CTGCTGCCTCTTGCT-TTCTGCTGTCTTTCTCTATCAAGGTGTGAA-GAAATTCTCGTCC 73
||||||| | ||| | ||||| | ||||||||||||||||||||| ||| |||| |
Sbjct 35 CTGCTGCTTGTTG-TCCTCTGCAGCCTTTCTCTATCAAGGTGTGAATCAAA-AGTCGTGC 92
Query 74 CTTATGACTACTCGGCAACAATAGAGTGTCTAGAGATTCC-TTATAAACCACAGTACAAT 132
| ||||| || || ||||| ||||||||||||||||| || ||| |||||||||||||||
Sbjct 93 CGTATGATTATTCTGCAACCATAGAGTGTCTAGAGATCCCTTTA-AAACCACAGTACAAT 151
Query 133 GGAGGGATCATCGTGAATCCTGA--TATGCA-A-AATGGTTCCCAAGGCTGGTCA-CAGT 187
||||| |||||||| || ||||| || | | | |||||||| ||||||| || || |
Sbjct 152 GGAGGAATCATCGTAAACCCTGACCTACG-AGATGGTGGTTCCCTAGGCTGGACACCA-T 209
Query 188 TCGAAAATGCAAAAGTCAATTTCAGAGAATTTGGAGGCAATAAGTTTGTTGTTGC-C-AC 245
||| ||| || |||||| |||||||| || ||||| | |||| ||||||||||| | |
Sbjct 210 TCGGAAACGCGAAAGTCGATTTCAGAAAAATTGGAAACCATAATTTTGTTGTTGCACGAG 269
Query 246 ACAGAGAAATCAATCTTCTGACAGCGTCTCACAGAAGGTTTACTTGGAAAAAGGAATTCT 305
|||| |||| ||| ||| |||||| || |||||||||||||| |||||||| ||| ||||
Sbjct 270 ACAG-GAAA-CAACCTTATGACAGTGTTTCACAGAAGGTTTATTTGGAAAAGGGACTTCT 327
Query 306 CTACACATTCTCTGCTTGGTTACAAGTAAGCACAGGAAAAGCTCCTGTGAGTGCCGTTTT 365
|||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 328 CTACACTTTCTCTGCTTGGTTACAAGTAAGCAAAGGAAAGGCTCCTGTGAAAGCCGTTTT 387
Query 366 CAAGAAGAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGAATCCAAATGTTGGTC 425
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 388 CAAGAAGAATGGTGAATATAAGCATGCTGGTTCAGTTGTTGCTGAATCCAAATGCTGGTC 447
Query 426 CATGCTGAAAGGTGGCCTCACTGTTGATGAATCTGGTCCTGCTGAACTCT-TCGTCGAGA 484
|||||| || ||||| |||||||||||||||||||| ||||| |||||| | | ||||
Sbjct 448 CATGCTTAAGGGTGGTCTCACTGTTGATGAATCTGGCCCTGCCCAACTCTATTTT-GAGA 506
Query 485 GCGAGGACACAACAGTTGAGATTTGGGTTGATAGTGTCTCTTTGCAACCATTCACACAAG 544
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 507 GCGAGGATACAACTGTTGAGATTTGGGTTGATAGTGTCTCGTTGCAACCATTCACACAAG 566
Query 545 ACGAATGGAACGCTCACCAGGAGCAGAGCATTGACAATTCA-AGAAA-AGGTCCTGTCAG 602
| || |||||| ||||||| || || || ||| | || | ||||| || || || |
Sbjct 567 AAGAGTGGAACTCTCACCACGAACAAAGTATTCAGAAGG-AGAGAAAGAGAACC-GTGAA 624
Query 603 AATCAGAGTCGTCAATAACAAAGGCGAGAAGATACCAAACGCATCCATTACCATAGAACA 662
|||||||| ||| || | ||||||| || ||||||||| ||| ||||| |||| |||||
Sbjct 625 AATCAGAGCCGTGAACAGCAAAGGCCAGCCGATACCAAAAGCAACCATTTCCATTGAACA 684
Query 663 GAAGCGACTCGGATTCCCATTCGGGAGCGCTGTAGCACAGAACATACTTGGGAATCAAGC 722
|| | ||||||||||||||||||| ||| |||| | ||||||| || |||||| ||||
Sbjct 685 GAGGAAACTCGGATTCCCATTCGGGTGCGAGGTAGAAAAGAACATTCTCGGGAATAAAGC 744
Query 723 ATACCAAAACTGGTTCACTCAAAGATTCACCGTGACTACATTCGAAAACGAGATGAAATG 782
|||||||||||||||||||||||| ||||| ||||| || |||| ||||||||||||||
Sbjct 745 ATACCAAAACTGGTTCACTCAAAGGTTCACGGTGACAACTTTCGCGAACGAGATGAAATG 804
Query 783 GTACAGCACAGAA-TCTGTAAGAGGCATAGAGAATTACACAGTCG-CGGACGCAATGTTG 840
||||||||||||| | ||||||||||| |||| ||||| || || | ||||| ||||||
Sbjct 805 GTACAGCACAGAAGT-TGTAAGAGGCAAAGAGGATTACTCAA-CGGCTGACGCGATGTTG 862
Query 841 AGATTCTTCAACCAGCATGGCATTGCTGTACGTGGACACAATGTTGTATGGGACCACCCT 900
|||||||||| |||||||| ||||||||||||| |||||| || ||||| | | |||
Sbjct 863 CGATTCTTCAAGCAGCATGGGGTTGCTGTACGTGGCCACAATATTTTATGGAATGATCCT 922
Query 901 AAGTATCAATCTAAATGGGTTACTTCTCTGTCACGTAACGATCTATACAATGCAGTAAAA 960
||||||||| || |||||| | ||||||||| ||||||| || ||||| || || |||
Sbjct 923 AAGTATCAACCTGGATGGGTGAATTCTCTGTCTGGTAACGACCTCTACAACGCTGTGAAA 982
Query 961 CGAAGGGTTTTCTCGGTGGTCTCGCGATACAAAGGCCAGCTTGCCGGTTGGGATGTTGTG 1020
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 983 CGAAGGGTTTTCTCGGTGGTCTCACGATACAAGGGCCAGCTTGCGGGTTGGGACGTTGTG 1042
Query 1021 AATGAGAATCTCCATCACTCCTTCTTTGAG-AGCAAGTTTGGTCCTAACGCCTC-TAATA 1078
||||||||||||||| ||||| ||||||| | |||| | |||||||| ||||| || ||
Sbjct 1043 AATGAGAATCTCCATTTCTCCTACTTTGAGGA-CAAGATGGGTCCTAAAGCCTCATA-TA 1100
Query 1079 ACATCTTCGCGATGGCACATGCCATTGATCCAA-GCACAAC-AATGTTTATGAATGAATT 1136
||||||| |||||| || || ||||||||| | ||||| || ||||||||||||||
Sbjct 1101 ACATCTTTAAGATGGCGCAAGCGTTTGATCCAACG-ACAACCAA-GTTTATGAATGAATA 1158
Query 1137 CTATACATTAGAGGACCCTACAGAT-CTGAAAGCGAGTCCAGCGAAG-TATTTGGAGAAG 1194
| |||| |||||||| | | |||| | || | |||||||| ||| |||||| |||||
Sbjct 1159 CAATACGTTAGAGGAATCAAGAGATTCAGATT-CTAGTCCAGC-AAGGTATTTGCAGAAG 1216
Query 1195 CTTAGGGAGCTTCA-ATCTATTCGGGTTCGCGGAAACAT-TC-CATTGGGGATCGGTCTT 1251
|||||||||||| | |||||| || ||| | || ||||| || | | ||| ||||| ||
Sbjct 1217 CTTAGGGAGCTT-AGATCTATCCGAGTTTGTGGCAACATATCGC-TAGGG-ATCGGCCTC 1273
Query 1252 GAGTCTCATTTCA-GCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTCTTGG 1310
||||||||||||| | ||||| |||||||| || ||||||||||||||||| |||||||
Sbjct 1274 GAGTCTCATTTCAAG-ACTCCAAACATTCCATACATGAGATCAGCTCTTGACACTCTTGC 1332
Query 1311 TGCCACTGGTTTGCCTATTTGGCTCACTGAGATCGACGTTAAAGCTCCTTCCAG-TGATC 1369
||||||||||||||||||||||||||||||| | ||||| |||||||| ||| || ||
Sbjct 1333 TGCCACTGGTTTGCCTATTTGGCTCACTGAGGTTGACGTCGAAGCTCCT-CCAAATG-TC 1390
Query 1370 -AGGCCAAGTATTTTGAGCAAGTCCTAAGAGAGGGACATGCGCATCCGCATGTGAAAGGA 1428
|||||||||||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct 1391 CAGGCCAAGTATTTTGAGCGGGTCCTAAGGGAAGGCCACGCGCATCCGCAAGTGAAAGGA 1450
Query 1429 ATGGTGACGTGGACAGCTTATGCACCAA-A--TTGCTACCACA-TGTGCCTCACCGATGG 1484
|| || |||||| | | |||| | ||| | ||||||| | | ||||||| ||||||||
Sbjct 1451 ATAGTAACGTGGTCTGGTTATTCTCCATCAGGTTGCTAC-AGAATGTGCCTAACCGATGG 1509
Query 1485 AAACTTCAAGAATCT-ACCAACTGGAGATGTTGTGGACAAGCTTATACGTGAATGGGGAG 1543
|||||||||||| || ||| |||||||| ||||||||||| ||| | | ||||||||||
Sbjct 1510 AAACTTCAAGAA-CTTACCCACTGGAGACGTTGTGGACAAACTTCTCCACGAATGGGGAG 1568
Query 1544 GGCTAC-GCAGCCAAACTACTGAAGTCACCGATGCTGATGGATTCTTTGAAGCTTCACTC 1602
| || | |||| ||||| || | ||||| |||||||| |||| |||||||||||| |||
Sbjct 1569 G-CTTCCGCAGACAAACCACAGGTGTCACTGATGCTGACGGATACTTTGAAGCTTCTCTC 1627
Query 1603 TTTCATGGTGACTATGATCTCAATATTTCTCATCCTCTCACCAATTCAAGCGTTTCACAC 1662
|| ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||
Sbjct 1628 TTCCATGGTGACTACGATCTCAAAATTGATCATCCTCTCACCAATTCAAAAGCTTCTCAT 1687
Query 1663 AACTTTACGTTGACTTCTGATGACTCCTCTTTACATACCCAACCATCAACTTTTGTCTTT 1722
| ||||| | |||||||||||| |||||| | | | || ||| |||| ||||||| |||
Sbjct 1688 AGCTTTAAGCTGACTTCTGATGTCTCCTCCTCAGAGACTCAAGCATCCTCTTTTGTTTTT 1747
Query 1723 CGTGTTT 1729
|||||||
Sbjct 1748 CGTGTTT 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5