BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33840.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491295 jgi|Araly1|491295|fgenesh2_kg.7__728__AT4G33840.1 2878 0.0
Ahg491296 jgi|Araly1|491296|fgenesh2_kg.7__729__AT4G33830.1 1886 0.0
Ahg944537 jgi|Araly1|944537|scaffold_700766.1 1724 0.0
> Ahg491295 jgi|Araly1|491295|fgenesh2_kg.7__728__AT4G33840.1
Length=1930
Score = 2878 bits (1558), Expect = 0.0
Identities = 1812/1936 (94%), Gaps = 11/1936 (1%)
Strand=Plus/Plus
Query 52 TCCTGCAATGAAGCTTCTACTGTTGCTGCTTGCCTTCTGCTGTCTATCTCTATCAAGGTG 111
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTACAATGAAGCTTCTACTGCTGCTGCTTGCCTTCTGCTGTCTATCTCTATCAAGGTG 60
Query 112 TGAAGAACAATCCGTCCCTTATGATTACTCGGCAACAATAGAGTGTCTAGAGAACCCTTA 171
||||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 61 TGAAGAAAAATCCGTCCCTTATGATTACTCGGCAACAATAGAGTGTCTGGATACCCCTTA 120
Query 172 TAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACTTGCAAAATGGTTCACAAGG 231
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 121 TAAACCACAGTACAGTGGAGGGATCATCGTGAATCCTGACCTGCAAAATGGTTCACTAGG 180
Query 232 CTGGTCACAGTTTGGAAACGCCAAAGTCGATTTCAGAGAATTTGGAGGCAATAAGTTTGT 291
||||||||| || ||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 181 CTGGTCACAATTCGGAAATGCCAAAGTTGATTTCAGAGGGTTTGGAGGCAATAAGTTTGT 240
Query 292 TGTTGCCACACAAAGGAATCAATCTTCTGACAGCATCTCGCAGAAGGTGTACTTGGAAAA 351
|||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 241 TGTTGCCACACAGAGGAATCAATCTTCTGACAGCGTCTCACAGAAGGTTTACTTGGAAAA 300
Query 352 AGGAATTCTCTACACTTTCTCTGCTTGGTTACAAGTGAGCATAGGAAAATCTCCCGTGAG 411
||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||
Sbjct 301 AGGAATTCTCTACACTTTCTCGGCTTGGTTACAAGTAAGCAGAGGAAAAGCTCCCGTGAG 360
Query 412 CGCTGTTTTCAAGAAGAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGAATCCAA 471
|| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 361 TGCCGTTTTCAAGAAAAATGGTGAATATAAGTATGCCGGTTCTGTTGTTGCTGAATCCAA 420
Query 472 ATGTTGGTCCATGCTGAAAGGTGGTCTCACTGTTGATGAATCTGGTCCTGCTGAACTCTT 531
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 ATGCTGGTCCATGCTCAAAGGTGGTCTCACTGTTGATGAATCTGGTCCTGCTGATCTCTA 480
Query 532 CTTCGAGAGCGAGAACACAATGGTTGAGATTTGGGTTGATAGCGTCTCTTTGCAACCTTT 591
||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 481 CTTTGAGAGCGAGAACACAACAGTTGACATTTGGGTTGATAGCGTCTCTTTGCAACCTTT 540
Query 592 CACACAAGAAGAGTGGAACTCTCACCACGAACAGAGCATTGGCAAAGTAAGAAAAGGTAC 651
|||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 541 CACACAAGAAGAGTGGGACTCTCACCACGAACAGAGCATTGACAAAGCAAGAAAAGGTTC 600
Query 652 CGTGAGAATCAGAGTCATGAATAACAAAGGCGAGACGATACCTAATGCAACCATATCCAT 711
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 601 CGTGAGGATCAGAGTCATGAATAACAAAGGCGAGACGATACCAAACGCAACCATATCCAT 660
Query 712 AGAACAGAAGAAACTCGGATACCCATTCGGGTGCGCGGTAGAAAACAACATACTTGGGAA 771
||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AGAACAGAAGAAACTTGGATTCCCATTCGGGTGCGCAGTAGAAAACAACATACTTGGGAA 720
Query 772 TCAAGCATACCAAAACTGGTTCACTCAAAGATTTACCGTGACAACTTTCGGGAACGAGAT 831
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 TCAAGCATACCAAAACTGGTTCACTCAGAGATTTACCGTGACAACTTTCGGGAACGAGAT 780
Query 832 GAAATGGTACAGCACAGAAAGAATAAGAGGGCAAGAGGATTACTCGACAGCTGACGCGAT 891
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 GAAATGGTACAGCACAGAAAGAATAAGAGGCCAAGAGGATTACTCGACAGCTGACGCGAT 840
Query 892 GTTAAGTTTCTTCAAG-AGCCACGGGATTGCTGTACGTGGGCACAATGTTTTATGGGATG 950
||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 GTTTAGTTTCTTCAAGCA-ACACGGGATTGCTGTACGTGGGCACAATATTTTATGGGATG 899
Query 951 ATCCTAAGTACCAACCTGGATGGGTGAATTCTCTGTCTGGTAACGACCTCTACAACGCTG 1010
|||| | ||| |||||||||||||||||||||||||| || |||| ||||||||||| |
Sbjct 900 ATCCCAGGTATCAACCTGGATGGGTGAATTCTCTGTCCCGTGACGATCTCTACAACGCCG 959
Query 1011 TGAAACGAAGGGTTTACTCGGTTGTCTCGCGATACAAAGGACAGCTT-TTGGGTTGGGAT 1069
||||||||||||||| |||||| ||||| ||||||||||| |||||| | |||||||||
Sbjct 960 TGAAACGAAGGGTTTTCTCGGTGGTCTCACGATACAAAGGTCAGCTTACT-GGTTGGGAT 1018
Query 1070 GTTGTGAATGAGAATCTTCATTTCTCCTTCTTTGAGAGCAAGTTCGGTCCTAAAGCCTCT 1129
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GTTGTGAATGAGAATCTCCATTTCTCCTTCTTTGAGAGCAAGTTGGGTCCTAAAGCCTCT 1078
Query 1130 TATAACACCTACACAATGGCCCATGCCGTCGATCCAAGGACACCAATGTTCATGAATGAA 1189
|||||||| ||| |||||||||||||| |||||||| ||||| |||||||| ||||||||
Sbjct 1079 TATAACACATACGCAATGGCCCATGCCTTCGATCCACGGACAACAATGTTCCTGAATGAA 1138
Query 1190 TATAATACGTTAGAGCAACCTAAGGATTTAACTTCTAGTCCAGCAAGGTATTTGGGAAAG 1249
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TATAATACGTTAGAGCAACCTAATGATTTAACTTCTAGTCCAGCAAGGTATTTGGGAAAG 1198
Query 1250 CTTAGGGAGCTTCAATCTATTCGGGTTGCCGGAAAGATTCCGTTAGCGATAGGTCTTGAG 1309
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 CTTAGGGAGCTTCAATCTATTCGGGTTGCCGGAAAGATTCCGTTAGGGATAGGTCTTGAG 1258
Query 1310 TCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTTTTGGTGCC 1369
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1259 TCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTCTTGGTGCC 1318
Query 1370 ACTGGTTTGCCTATTTGGCTCACTGAGATTGACGTTGATGCGCCTCCCAATGTCCGGGCC 1429
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 1319 ACTGGTTTGCCTATTTGGCTCACTGAGGTAGACGTTGATGCGCCTCCCAATGTCCGGTCC 1378
Query 1430 AACTATTTCGAGCAAGTTCTAAGGGAAGGCCATGCACATCCGAAAGTGAATGGAATGGTG 1489
|| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 1379 AAGTATTTCGAGCAAGTTCTAAGGGAAGGCCATGCGCATCCGAAGGTGAAAGGAATGGTG 1438
Query 1490 ATGTGGACAGGTTATTCTCCATCAGGTTGCTACCGAATGTGCCTCACCGATGGAAACTTT 1549
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 ATGTGGACAGGTTATTCACCATCAGGTTGCTACAGAATGTGCCTCACCGATGGAAACTTC 1498
Query 1550 AAGAACCTACCCACTGGAGACGTCGTGGACAAGCTTTTACGTGAATGGGGAGGGCTTCGC 1609
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1499 AAGAACCTACCCACTGGAGATGTCGTGGACAAGCTTCTACGTGAATGGGGAGGGCTTCGC 1558
Query 1610 AGCCAAACCACAGGTGTCACTGATGCTAATGGGTTATTTGAAGCTCCACTCTTTCATGGT 1669
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1559 AGCCAAACCACCGGTGTCACTGATGCTAATGGGTTCTTTGAAGCTTCACTCTTTCATGGT 1618
Query 1670 GACTATGATCTCCGTATATCCCATCCTCTCACCAATTCAAAGGCTTCTTACAACTTTACG 1729
||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 1619 GACTATGATCTTAATATATCTCATCCTCTCACCAATTCAAAATCTTCTTACAACTTCACG 1678
Query 1730 TTGACTTCC-GATGACGACTCCTC-ACAGAAACAACCATCTCTATATGTCTTTCGTGTTT 1787
|||||| || |||||| ||| || | ||| ||||||||||||| |||| ||||| |||
Sbjct 1679 TTGACT-CCTGATGACTCCTC-TCCAAAGACCCAACCATCTCTATTTGTCGTTCGTATTT 1736
Query 1788 GAGAAGCTAAGTTTACAACTACTTTGTATTTGAGTAGTTTGATTCTTATTGGCAGATTAG 1847
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1737 GAGAAGCTAAGTTTACAACTACTTTGTATTTGAGTAGTTTGATTCTTAGTGGCAGAT-AG 1795
Query 1848 TGTGTTTTCCATTATAACTTTGTGTGAGGAAACTCCCATGGGATATCCATGAGCATCGTT 1907
|||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1796 TGTGTTTTGCATTATAGCTGTGTGTGAGGAAACTCCCATGGGATATCCATGAGAATCGTT 1855
Query 1908 GGGTTGGTTTCTTATACTTTAATTAAGCCGTGATATTGTAATAAAATTATCAATGAT-AT 1966
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| || ||
Sbjct 1856 GGGTTGGTTTCTTATACTTTAATTAAGCCTTGAAATTGTAATAGAATTATCAAT-ATTAT 1914
Query 1967 TGAACTTCCTTTAACT 1982
||||||||||||||||
Sbjct 1915 TGAACTTCCTTTAACT 1930
> Ahg491296 jgi|Araly1|491296|fgenesh2_kg.7__729__AT4G33830.1
Length=1776
Score = 1886 bits (1021), Expect = 0.0
Identities = 1446/1650 (88%), Gaps = 33/1650 (2%)
Strand=Plus/Plus
Query 155 TGTCTAGAGAACCCTTATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACTTG 214
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 145 TGTCTGGATACCCCTTATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACCTG 204
Query 215 CAAAATGGTTCACAAGGCTGGTCACAGTTTGGAAACGCCAAAGTCGATTTCAGAGAATTT 274
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 205 CAAAATGGTTCACTAGGCTGGTCACAGTTTGGAAATGCCAAAGTCGATTTCAGAGAATTT 264
Query 275 GGAGGCAATAAGTTTGTTGTTGCCACACAAAGGAATCAATCTTCTGACAGCATCTCGCAG 334
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 265 GGAGGCAATAAGTTTGTTGTTGCCACACAGAGGAATCAATCTTCTGACAGCGTCTCACAG 324
Query 335 AAGGTGTACTTGGAAAAAGGAATTCTCTACACTTTCTCTGCTTGGTTACAAGTGAGCATA 394
| ||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 325 ATGGTTTACTTGGAAAAAGGAATTCTTTACACTTTCTCGGCTTGGTTACAAGTAAGCATA 384
Query 395 GGAAAATCTCCCGTGAGCGCTGTTTTCAAGAAGAA-TGGTGAATATAAGCATGCCGGTTC 453
||||||||||| |||||||| |||||||| || || ||||||| ||||||||||||||||
Sbjct 385 GGAAAATCTCCGGTGAGCGCCGTTTTCAA-AATAAATGGTGAAGATAAGCATGCCGGTTC 443
Query 454 GGTTGTTGCTGAATCCAAATGTTGGTCCATGCTGAAAGGTGGTCTCACTGTTGATGAATC 513
||||||||||||||||| ||| ||||| ||||| ||||||||| ||||||||||||||||
Sbjct 444 GGTTGTTGCTGAATCCAGATGCTGGTCGATGCTTAAAGGTGGTATCACTGTTGATGAATC 503
Query 514 TGGTCCTGCTGAACTCTTCTTCGAGAGCGAGAACACAATGGTTGAGATTTGGGTTGATAG 573
||||||||| || |||| ||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 504 TGGTCCTGCCGATCTCTACTTTGAGAGCGAGGACACAGCGGTTGAGATTTGGGTTGATAG 563
Query 574 CGTCTCTTTGCAACCTTTCACACAAGAAGAGTGGAACTCTCACCACGAACAGAGCATTG- 632
||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||||||||
Sbjct 564 CGTCTCTTTGCAACCATTCACCCAAAAAGAGTGGAACGCTCACCAGGAACAGAGCATTGA 623
Query 633 GCAAAGTAAGAAAAGGTACCGTGAGAATCAGAGTCATGAATAACAAAGGCGAGACGATAC 692
| || | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 624 G-AAGGCAAGAAAAGGTGCCGTGAGAATCAGAGTCGTGAATAACAAAGGCGAGAAGATAC 682
Query 693 CTAATGCAACCAT-ATCCATAGAACAGAAGAAACTCGGATACCCATTCGGGTGCGCGGTA 751
| || ||| |||| | |||||| |||||| | |||||||| |||||||||| |||| |||
Sbjct 683 CAAACGCATCCATTA-CCATAGTACAGAACAGACTCGGATTCCCATTCGGGAGCGCTGTA 741
Query 752 GAAAACAACATACTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTTACCGTG 811
| | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 742 GCACAGAACATACTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTCACCGTG 801
Query 812 ACAACTTTCGGGAACGAGATGAAATGGTACAGCACAGAAAGAATAAGAGGGCA-AGAGGA 870
||||| |||| ||||||||||||||||||||||| ||| ||||||| || |||| |
Sbjct 802 ACAACATTCGAAAACGAGATGAAATGGTACAGCACGGAATCTGTAAGAGG-CATAGAGAA 860
Query 871 TTACT-CGA-CAGCTGACGCGATGTTAAGTTTCTTCAAG-AGCCACGGGATTGCTGTACG 927
||| | ||| | || ||||||||||| || ||||||||| ||| ||| |||||||||||
Sbjct 861 TTA-TACGATC-GCGGACGCGATGTTGAGATTCTTCAAGCAGC-ACGACATTGCTGTACG 917
Query 928 TGGGCACAATGTTTTATGGGATGATCCTAAGTACCAACCTGGATGGGTGAATTCTCTGTC 987
||| ||||||||| ||||||| | |||||||||||| || |||||| | |||||||||
Sbjct 918 TGGACACAATGTTGTATGGGACCACCCTAAGTACCAATCTAAATGGGTTACTTCTCTGTC 977
Query 988 TGGTAACGACCTCTACAACGCTGTGAAACGAAGGGTTTACTCGGTTGTCTCGCGATACAA 1047
||||||| ||||||| || |||||||||||||||| ||| || ||||||||||||||
Sbjct 978 ACGTAACGATATCTACAATGCAGTGAAACGAAGGGTTTTCTCTGTGGTCTCGCGATACAA 1037
Query 1048 AGGACAGCTTT-TGGGTTGGGATGTTGTGAATGAGAATCTTCATTTCTCCTTCTTTGAGA 1106
||| |||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1038 AGGCCAGCTTGCTGG-TTGGGATGTTGTGAATGAGAATCTGCATCACTCCTTCTTTGAGA 1096
Query 1107 GCAAGTTCGGTCCTAAAGCCTCTTATAACACCTACACAATGGCCCATGCCGTCGATCCAA 1166
| ||||| |||||||| |||||| |||||| || | ||||||| |||||| |||||||||
Sbjct 1097 GTAAGTTTGGTCCTAACGCCTCTAATAACATCTTCGCAATGGCGCATGCCATCGATCCAA 1156
Query 1167 GGACACCAATGTTCATGAATGAATA-TAATACGTTAGAGCAACCTAAGGATTT-AACTTC 1224
||||| |||||||||||||||||| || ||| |||||| | |||| |||| | || |
Sbjct 1157 GGACAACAATGTTCATGAATGAATTCTA-TACATTAGAGGACCCTACGGATCTGAAAG-C 1214
Query 1225 TAGTCCAGCAAGGTATTTGG-GAAAGCTTAGGGAGCTTCAATCTATTCGGGTT-GCCGGA 1282
|||||||||| ||||||| ||| |||||||||||||||||||||||||||| | |||
Sbjct 1215 GAGTCCAGCAAAGTATTTGCAGAA-GCTTAGGGAGCTTCAATCTATTCGGGTTCGT-GGA 1272
Query 1283 AAGATTCCGTTAGCGATAGGTCTTGAGTCTCATTTCAGCACTCCTAACATTCCGTATATG 1342
|| ||||| || | ||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1273 AACATTCCATTGGGGATCGGTCTTGAGTCTCATTTCAGTACTCCTAACATTCCGTACATG 1332
Query 1343 AGATCAGCTCTTGATACTT-TTGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGATTGA 1401
||||||| |||||||| || |||| |||||||||||||||||||||||||||||||| ||
Sbjct 1333 AGATCAGGTCTTGATA-TTCTTGGCGCCACTGGTTTGCCTATTTGGCTCACTGAGATCGA 1391
Query 1402 CGTTGATGCGCCTCCCAATGTCCGGGCCAACTATTTCGAGCAAGTTCTAAGGGAAGGCCA 1461
|||| | || ||| || |||| | |||||| ||||| |||||||| ||||||||||| ||
Sbjct 1392 CGTTAAAGCTCCTTCCGATGTTCAGGCCAAGTATTTTGAGCAAGTCCTAAGGGAAGGACA 1451
Query 1462 TGCACATCCGAAAGTGAATGGAATGGTGATGTGGACAGGTTATTCTCCATCAGGTTGCTA 1521
||| |||||| | ||||| ||||||||||||||||||| |||||| ||| || ||||||
Sbjct 1452 TGCGCATCCGCATGTGAAAGGAATGGTGATGTGGACAGCTTATTCACCA--AG-TTGCTA 1508
Query 1522 CCGA-ATGTGCCTCACCGATGGAAACTTTAAGAACCTACCCACTGGAGACGTCGTGGACA 1580
|| | ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1509 CC-ATATGTGCCTCACTGATGGAAACTTCAAGAACCTACCCACTGGAGACGTTGTGGACA 1567
Query 1581 AGCTTTTACGTGAATGGGGAGGGCTTCGCAGCCAAACCACAGGTGTCACTGATGCTAATG 1640
|||| ||||||||||||||||||| || ||||||||||| || |||||||||||| |||
Sbjct 1568 AGCTGCTACGTGAATGGGGAGGGCTACGTAGCCAAACCACTGGAGTCACTGATGCTGATG 1627
Query 1641 GGTTATTTGAAGCTCCACTCTTTCATGGTGACTATGATCTCCGTATATCCCATCCTCTCA 1700
| || ||||||||| |||||||||||||||||||||||||| ||| || || ||||||
Sbjct 1628 GATTCTTTGAAGCTTCACTCTTTCATGGTGACTATGATCTCAATATTTCTCACCCTCTCG 1687
Query 1701 CCAATTCAAAGGCTTCTTACAACTTTACGTTGACTTCCGATGACGACTCCTCACAGAAAC 1760
|||||||||| |||| ||||||||||||||||||||| |||||| ||| ||||||| |
Sbjct 1688 CCAATTCAAAAGCTTATTACAACTTTACGTTGACTTCTGATGACTCCTCTTCACAGACCC 1747
Query 1761 AACCATCTCTATATGTCTTT-CGTGTTTGA 1789
||||||| | | ||||||| | |||||||
Sbjct 1748 AACCATCAATTTTTGTCTTTTC-TGTTTGA 1776
> Ahg944537 jgi|Araly1|944537|scaffold_700766.1
Length=1777
Score = 1724 bits (933), Expect = 0.0
Identities = 1515/1789 (85%), Gaps = 67/1789 (4%)
Strand=Plus/Plus
Query 57 CAATGAAGC-TTCTACTGTTGC-TGCTTG-CCTTCTGCTGTCTATCTCTATCAAGGTGTG 113
||||||||| || | ||| ||| || ||| || ||||| | || ||||||||||||||||
Sbjct 21 CAATGAAGCGTT-TGCTGCTGCTTG-TTGTCC-TCTGCAGCCTTTCTCTATCAAGGTGTG 77
Query 114 AA-GAACAA-TCCGTCCCTTATGATTACTCGGCAACAATAGAGTGTCTAGAGAACCC-TT 170
|| || || | ||| || |||||||| || ||||| |||||||||||||||| ||| ||
Sbjct 78 AATCAA-AAGT-CGTGCCGTATGATTATTCTGCAACCATAGAGTGTCTAGAGATCCCTTT 135
Query 171 ATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACTTGC-A-A-AATGGTTCAC 227
| |||||||||||||||||||| |||||||| || |||||| | | | | |||||| |
Sbjct 136 A-AAACCACAGTACAATGGAGGAATCATCGTAAACCCTGACCTACGAGATGGTGGTTCCC 194
Query 228 AAGGCTGGTCA-CAGTTTGGAAACGCCAAAGTCGATTTCAGAGAATTTGGAGGCAATAAG 286
||||||| || || || |||||||| ||||||||||||||| || ||||| | ||||
Sbjct 195 TAGGCTGGACACCA-TTCGGAAACGCGAAAGTCGATTTCAGAAAAATTGGAAACCATAAT 253
Query 287 TTTGTTGTTGCCAC-ACAAAGGAATCAATCTTCTGACAGCATCTCGCAGAAGGTGTACTT 345
|||||||||| ||| | | ||||| ||| ||| |||||| | || |||||||| || ||
Sbjct 254 TTTGTTGTTG-CACGAGACAGGAAACAACCTTATGACAGTGTTTCACAGAAGGTTTATTT 312
Query 346 GGAAAAAGGAATTCTCTACACTTTCTCTGCTTGGTTACAAGTGAGCATAGGAAAATCTCC 405
|||||| ||| ||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 313 GGAAAAGGGACTTCTCTACACTTTCTCTGCTTGGTTACAAGTAAGCAAAGGAAAGGCTCC 372
Query 406 CGTGAGCGCTGTTTTCAAGAAGAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGA 465
|||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 373 TGTGAAAGCCGTTTTCAAGAAGAATGGTGAATATAAGCATGCTGGTTCAGTTGTTGCTGA 432
Query 466 ATCCAAATGTTGGTCCATGCTGAAAGGTGGTCTCACTGTTGATGAATCTGGTCCTGCTGA 525
||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 433 ATCCAAATGCTGGTCCATGCTTAAGGGTGGTCTCACTGTTGATGAATCTGGCCCTGCCCA 492
Query 526 ACTCT-TCTTCGAGAGCGAGAACACAA-TGGTTGAGATTTGGGTTGATAGCGTCTCTTTG 583
||||| | || ||||||||| | |||| | |||||||||||||||||||| ||||| |||
Sbjct 493 ACTCTAT-TTTGAGAGCGAGGATACAACT-GTTGAGATTTGGGTTGATAGTGTCTCGTTG 550
Query 584 CAACCTTTCACACAAGAAGAGTGGAACTCTCACCACGAACAGAGCATTGGCA-AAGTAAG 642
||||| ||||||||||||||||||||||||||||||||||| || ||| || ||| ||
Sbjct 551 CAACCATTCACACAAGAAGAGTGGAACTCTCACCACGAACAAAGTATT--CAGAAG-GAG 607
Query 643 A-AAAG-GTACCGTGAGAATCAGAGTCATGAATAACAAAGGCGAGACGATACCTAATGCA 700
| |||| | ||||||| |||||||| | |||| | ||||||| || ||||||| || |||
Sbjct 608 AGAAAGAGAACCGTGAAAATCAGAGCCGTGAACAGCAAAGGCCAGCCGATACCAAAAGCA 667
Query 701 ACCATATCCATAGAACAGAAGAAACTCGGATACCCATTCGGGTGCGCGGTAGAAAACAAC 760
||||| ||||| ||||||| ||||||||||| |||||||||||||| ||||||||| |||
Sbjct 668 ACCATTTCCATTGAACAGAGGAAACTCGGATTCCCATTCGGGTGCGAGGTAGAAAAGAAC 727
Query 761 ATACTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTTACCGTGACAACTTTC 820
|| || |||||| |||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 728 ATTCTCGGGAATAAAGCATACCAAAACTGGTTCACTCAAAGGTTCACGGTGACAACTTTC 787
Query 821 GGGAACGAGATGAAATGGTACAGCACAGAAAG-AATAAGAGGGC-AAGAGGATTACTCGA 878
| |||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||| |
Sbjct 788 GCGAACGAGATGAAATGGTACAGCACAG-AAGTTGTAAGA-GGCAAAGAGGATTACTCAA 845
Query 879 CAGCTGACGCGATGTTAAGTTTCTTCAAG-AGCCACGGGATTGCTGTACGTGGGCACAAT 937
| |||||||||||||| | ||||||||| || || ||| ||||||||||||| ||||||
Sbjct 846 CGGCTGACGCGATGTTGCGATTCTTCAAGCAG-CATGGGGTTGCTGTACGTGGCCACAAT 904
Query 938 GTTTTATGGGATGATCCTAAGTACCAACCTGGATGGGTGAATTCTCTGTCTGGTAACGAC 997
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 ATTTTATGGAATGATCCTAAGTATCAACCTGGATGGGTGAATTCTCTGTCTGGTAACGAC 964
Query 998 CTCTACAACGCTGTGAAACGAAGGGTTTACTCGGTTGTCTCGCGATACAAAGGACAGCTT 1057
|||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||||
Sbjct 965 CTCTACAACGCTGTGAAACGAAGGGTTTTCTCGGTGGTCTCACGATACAAGGGCCAGCTT 1024
Query 1058 TTGGGTTGGGATGTTGTGAATGAGAATCTTCATTTCTCCTTCTTTGAG-AGCAAGTTCGG 1116
||||||||| ||||||||||||||||| |||||||||| ||||||| | |||| | ||
Sbjct 1025 GCGGGTTGGGACGTTGTGAATGAGAATCTCCATTTCTCCTACTTTGAGGA-CAAGATGGG 1083
Query 1117 TCCTAAAGCCTCTTATAACACCTACACA-ATGGCCCATGCCGTC-GATCCAAGGACA-CC 1173
|||||||||||| ||||||| || | | ||||| || || || ||||||| |||| ||
Sbjct 1084 TCCTAAAGCCTCATATAACATCTTTA-AGATGGCGCAAGC-GTTTGATCCAACGACAACC 1141
Query 1174 AATGTTCATGAATGAATATAATACGTTAGAGCAACCTAAG-GATTTA-ACTTCTAGTCCA 1231
|| ||| ||||||||||| |||||||||||| || | ||| |||| | | ||||||||||
Sbjct 1142 AA-GTTTATGAATGAATACAATACGTTAGAGGAATC-AAGAGATTCAGA-TTCTAGTCCA 1198
Query 1232 GCAAGGTATTTGG-GAAAGCTTAGGGAGCTTCA-ATCTATTCGGGTT-GCCGGAAAGAT- 1287
|||||||||||| ||| ||||||||||||| | |||||| || ||| | || || ||
Sbjct 1199 GCAAGGTATTTGCAGAA-GCTTAGGGAGCTT-AGATCTATCCGAGTTTGT-GGCAACATA 1255
Query 1288 TCCGTTAGCGATAGGTCTTGAGTCTCATTTCA-GCACTCCTAACATTCCGTATATGAGAT 1346
|| | ||| ||| || || ||||||||||||| | ||||| |||||||| || |||||||
Sbjct 1256 TC-GCTAGGGATCGGCCTCGAGTCTCATTTCAAG-ACTCCAAACATTCCATACATGAGAT 1313
Query 1347 CAGCTCTTGATACTTTTGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGATTGACGTTG 1406
|||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1314 CAGCTCTTGACACTCTTGCTGCCACTGGTTTGCCTATTTGGCTCACTGAGGTTGACGTCG 1373
Query 1407 ATGCGCCTCCCAATGTCCGGGCCAACTATTTCGAGCAAGTTCTAAGGGAAGGCCATGCAC 1466
| || ||||| ||||||| |||||| ||||| |||| || |||||||||||||| || |
Sbjct 1374 AAGCTCCTCCAAATGTCCAGGCCAAGTATTTTGAGCGGGTCCTAAGGGAAGGCCACGCGC 1433
Query 1467 ATCCGAAAGTGAATGGAATGGTGATGTGGACAGGTTATTCTCCATCAGGTTGCTACCGAA 1526
||||| ||||||| ||||| || | |||| | |||||||||||||||||||||||| |||
Sbjct 1434 ATCCGCAAGTGAAAGGAATAGTAACGTGGTCTGGTTATTCTCCATCAGGTTGCTACAGAA 1493
Query 1527 TGTGCCTCACCGATGGAAACTTTAAGAACCTACCCACTGGAGACGTCGTGGACAAGCTTT 1586
||||||| |||||||||||||| |||||| |||||||||||||||| |||||||| |||
Sbjct 1494 TGTGCCTAACCGATGGAAACTTCAAGAACTTACCCACTGGAGACGTTGTGGACAAACTTC 1553
Query 1587 TACGTGAATGGGGAGGGCTTC-GCAGCCAAACCACAGGTGTCACTGATGCTAATGGGTTA 1645
| | ||||||||||| |||| |||| |||||||||||||||||||||||| | || | |
Sbjct 1554 TCCACGAATGGGGAGG-CTTCCGCAGACAAACCACAGGTGTCACTGATGCTGACGGAT-A 1611
Query 1646 -TTTGAAGCTCCACTCTTTCATGGTGACTATGATCTCCGTAT--ATCCCATCCTCTCACC 1702
||||||||| | ||||| ||||||||||| |||||| || ||| |||||||||||
Sbjct 1612 CTTTGAAGCTTCTCTCTTCCATGGTGACTACGATCTCAAAATTGATC--ATCCTCTCACC 1669
Query 1703 AATTCAAAGGCTTCTTACAACTTTACGTTGACTTCCGATGACGACTCCTCACAGAAACAA 1762
|||||||| |||||| | | ||||| | ||||||| |||| | ||||||| ||| |||
Sbjct 1670 AATTCAAAAGCTTCTCATAGCTTTAAGCTGACTTCTGATGTCTCCTCCTCAGAGACTCAA 1729
Query 1763 CCATC-TCTATATGTCTTTCGTGTTTGAGAAGCTAAGTTTACAACTACT 1810
|||| ||| | ||| |||||||||| |||||| |||| || |||||||
Sbjct 1730 GCATCCTCTTT-TGTTTTTCGTGTTTAAGAAGCCAAGTATAAAACTACT 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5