BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33865.1
Length=439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491293 jgi|Araly1|491293|fgenesh2_kg.7__726__AT4G33865.1 608 9e-174
Ahg944532 jgi|Araly1|944532|scaffold_700761.1 257 4e-68
> Ahg491293 jgi|Araly1|491293|fgenesh2_kg.7__726__AT4G33865.1
Length=426
Score = 608 bits (329), Expect = 9e-174
Identities = 397/429 (93%), Gaps = 7/429 (2%)
Strand=Plus/Plus
Query 9 CTCTCTCGAGCCGCACATATTTCGTCTTCTTGATCTAATCGCTTTGAGCTGTTAGCAGAG 68
|||||||| ||||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct 1 CTCTCTCGCGCCGCACTTGTCTCGTCTTCTTGATCTAGTCGCTTTGAGCTGTGAGCAGAG 60
Query 69 AGCAGTCGACAATCATGGGTCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTC 128
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAGTCGACGAGAATGGGCCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTC 120
Query 129 CTGGTTCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTC 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGGTTCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTC 180
Query 189 TCAACTGCTGCAGACAGTGTTTCCGTAGCAACGCCAAGGAAATCGGATTCATTAAGTACC 248
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TCAATTGCTGCAGGCAGTGTTTCCGTAGCAACGCCAAGGAAATCGGTTTCATTAAGTACC 240
Query 249 GTTGATGATCGATGTTGTTCACACAGGAGCATCATGTCTTTTGAGTT-TTAAACTTT--G 305
|||||||||||||||| | |||||||||||| ||||||||| ||| ||||||||| |
Sbjct 241 GTTGATGATCGATGTT-T--ACACAGGAGCATTGTGTCTTTTGGGTTCTTAAACTTTATG 297
Query 306 CGTTGAACTT-GTAATCGATTTATCGACATTGAACTAATTTGATTATGTTTTTGTGCTGT 364
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 298 CGTTGAACTTTGTAATCGATTTATCGACATTGAACTAATTTGATAATGTTTTTGAGCTGT 357
Query 365 TGAATCTACAAGTTACTTTGTTCTACTATTGCTTATAAGTTTATCAGATATATTTGCTTA 424
|||||||| ||||||||| |||||||||||| |||| ||||||| |||||||||||||
Sbjct 358 TGAATCTATGCGTTACTTTGGTCTACTATTGCTGATAAATTTATCAAATATATTTGCTTA 417
Query 425 ATTGATTAG 433
|||||||||
Sbjct 418 ATTGATTAG 426
> Ahg944532 jgi|Araly1|944532|scaffold_700761.1
Length=213
Score = 257 bits (139), Expect = 4e-68
Identities = 165/178 (93%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 74 TCGACAATCATGGGTCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTCCTGGT 133
|||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 12 TCGAAAATCATGGGCCACTCTAACGTTTGGAATTCTCATCCTAAAAAATACGGACCTGGA 71
Query 134 TCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTCTCAAC 193
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 72 TCTCGCTTATGCCGTGTGTGCGGAAACTCCCATGGATTAATCAGGAAGTATGGTCTTAAC 131
Query 194 TGCTGCAGACAGTGTTTCCGTAGCAACGCCAAGGAAATCGGATTCATTAAGTACCGTT 251
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 132 TGCTGTAGACAGTGTTTCCGTAGCAACGCCAAGGAAATCGGTTTCATTAAGTACCGTT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834569435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5