BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33870.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888697 jgi|Araly1|888697|Al_scaffold_0007_683 1201 0.0
> Ahg888697 jgi|Araly1|888697|Al_scaffold_0007_683
Length=1092
Score = 1201 bits (650), Expect = 0.0
Identities = 807/881 (92%), Gaps = 18/881 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTTCCTCGGAGACTACAAGTTCGCTTTACTTACTTGCTCCGTTATCGCTCTCAGC 60
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTTCTCGGAGACTACAAGATCGCTTTACTTACTTGCTCCGTTATCGCTCTCAGC 60
Query 61 ATCTACTTCGCGATT-AA--CGTCGAATTTCGTTTCGCGTACGATTCACCGGGAACTCGT 117
|||||||| |||||| || ||||||||||||||||||| ||||||||||||||| ||||
Sbjct 61 ATCTACTTTGCGATTAAAGGCGTCGAATTTCGTTTCGCGAACGATTCACCGGGAAATCGT 120
Query 118 ACCGGAGTTAAGGTTTCCGAGAAATCTCCCTTCGACGACGAATTCATGTACATGTCAATC 177
| ||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 121 AACGGAGGTAAGGTTTCCGAGAAATCTCTCTTCGAAGATGAATTCATGTACATGTCAATC 180
Query 178 GCTGAAGATATCGATCGATCTTACCTCCACTACGATTACTACCGTGAATCTTGCCCTACC 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGAAGATATCGATCGATCTCACCTCCACTACGATTACTACCGTGAATCTTGCCCTACC 240
Query 238 GCCGAGAAAATCATCGCGAAAGCTATCAGAGATATCTACAATGTCACACCCAGCGTAGCT 297
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 241 GCCGAGAAAATCATCGCGAAAGCTAGCAGAGATATCTACAATGTCACACCCAGCGTGGCT 300
Query 298 CCGCCTATTATCCGTCTCCTCTTTCACGATTGCTTCATCGAGGGATGTGATGCATCAGTC 357
||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CCGTCTCTTATCCGTCTCCTCTTTCACGATTGCTTCATCGAGGGATGTGATGCATCGGTC 360
Query 358 CTTCTAGACGCAGATGAAGCACATACTTCTGAGAAAGATGCATCTCCAAACCTATCCTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTAGACGCAGATGAAGCACATACTTCTGAGAAAGATGCATCTCCAAACCTATCCTTG 420
Query 418 AAAGGGTTTGATGTGATTGACGCCGTTAAGTCTGAGCTAGAGAATGTCTGTCCCGGAGTT 477
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGGCTTTGATGTGATTGACGCCATTAAGTCTGAGCTAGAGAATGTCTGTCCCGGAGTT 480
Query 478 GTTTCCTGTGCTGACCTACTTGTATTGGCAGCTAGAGAAGCCGTCCTAGTTG-TAAATT- 535
|| ||||| || ||||| ||||||||||||||||||||||| |||||||| | | |
Sbjct 481 GTGTCCTGCGCCGACCTTCTTGTATTGGCAGCTAGAGAAGCAGTCCTAGTGGCTGG-TGG 539
Query 536 TCCCCTCTCTCACTCTCTCTTCTGGTT-------T--TGCAGCAGCCTACAGGGATTTTG 586
||| | | || |||| |||| | ||||||||||| |||||| |||
Sbjct 540 TCCATTTTATC-CTCTAGAAACTGGAAGGAAGGATAGTGCAGCAGCCTTCAGGGAGATTG 598
Query 587 CAGAACA-CGAGCTTCCTGCACCAGACGCTACTCTGTCGGTGATTCTTCAACGTTTTTCT 645
||||||| | ||||||||||||||||||||||||| |||| ||||||| || | ||||||
Sbjct 599 CAGAACAAC-AGCTTCCTGCACCAGACGCTACTCTCTCGGAGATTCTTGAAAGGTTTTCT 657
Query 646 TTCAGAGGATTCAACGAGAGAGAAACCGTCAGCTTATTCGGAGCACACAGCATTGGCATC 705
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 GTCAGAGGATTCAACGAGAGAGAAACCGTCAGCTTATTCGGAGCACACAGCATAGGCATC 717
Query 706 ACGCATTGCACATTTTTTAAGAACCGCCTCTACAACTTCTCAGCAACCGGGAAGCCTGAT 765
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 ACGCATTGCACATTTTTTAAGAATCGCCTCTACAACTTCTCAGCAACCGGGAAGCCTGAC 777
Query 766 CCTGAACTCAATCCAGGGTTCCTCCAAGAACTGAAAACGAAATGCCCCTTCTCTGTCTCG 825
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 CCTGAACTCAATCCAGGGTTCCTCCAAGAACTGAAAACCAAATGCCCCTTCTCTGTCTCG 837
Query 826 ACTTCATCTCCATCTGCTCCCCCTGACATTGGTTTACCACC 866
||||||||||||||||| |||||| || |||||||| |||
Sbjct 838 GCTTCATCTCCATCTGCTTCCCCTGGCACTGGTTTACTACC 878
Score = 326 bits (176), Expect = 3e-88
Identities = 208/223 (93%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 985 TACTTCCGAAGACTAATGCAGAATAAAGGGTTGATGTCTTCTGACCAGCAACTAATGGGT 1044
|||| || |||||| |||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 872 TACTACC-AAGACTGATGCAGAAGAAAGGGTTGCTGTTTTCTGACCAGCAACTAATGGGT 930
Query 1045 AGTGAAGTGACTGAGATGTGGGTGAGGGCATATGCTTCTGATCCGT-TGTTGTTCCGCAG 1103
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 931 AGTGAGGTGACTGAGATGTGGGTGAGGGCATATGCTTCTGATCC-TCTGTTGTTCCGCAG 989
Query 1104 AGAATTTGCTATGTCAATGATGAAACTTTCAAGCTATAATGTCTTGACTGGTCCTCTAGG 1163
||||||||||||||| ||||||||||| |||||| || |||||||||||||||| |||||
Sbjct 990 AGAATTTGCTATGTCTATGATGAAACTGTCAAGCAATCATGTCTTGACTGGTCCACTAGG 1049
Query 1164 ACAAGTGAGAACAAGCTGCTCAAAGGCCCTCCCCAGGAACTGA 1206
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1050 ACAAGTGAGAACAAGCTGCTCAAAGGCCCTCCCGAGGAACTGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5