BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33880.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1 1982 0.0
Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1 327 9e-89
> Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1
Length=1267
Score = 1982 bits (1073), Expect = 0.0
Identities = 1213/1278 (95%), Gaps = 19/1278 (1%)
Strand=Plus/Plus
Query 1 ACTTCTCACAAGACTTCCAACTAACAATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTCTCACAAGACTTCCAACTAACGATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60
Query 61 CGCTTAGTTAACAAAACATATAAAAATGGAAGCCATGGGAGAATGGAGCAACAACCTCGG 120
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGCTTAGTTAACAAAACAAAT-AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGG 119
Query 121 AGGAATGTACACTTATGCAACCGAGGAAGCCGATTTCATGAACCAGCTTCTCGCCTCTTA 180
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 120 AGGAATGTACACTTATGCAACCGAGGAGGCCGATTTCATGAACCAGCTCCTTGCCTCTTA 179
Query 181 TGATCATCCTGGCACCGGCTCATCCTCCGGCGCAGCAGCCAGTGGTG---ACCACCAAGG 237
||||||||||||||||||||||||||| || ||| | || |||||| ||||||||||
Sbjct 180 TGATCATCCTGGCACCGGCTCATCCTCTGGTGCA--A-CCGGTGGTGATCACCACCAAGG 236
Query 238 CTTGTATTGGAACCTTGGTTCTCATCACAACCACCTTAGCCTCGTGTCTGAAGCCGGTAG 297
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 CTTGTATTGGAACCTTGGTTCTCATCACAACCATCTTAGCCTCGTGTCTGAAGCCGGTAG 296
Query 298 CTTCTGTTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATATTACACCGT 357
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 TTTCTGCTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATACTACACCGT 356
Query 358 TGTTCCACCCACGGTTGAAGAGAACCAAAATGAGACAATGGACTTTGGGATGGAAGATGT 417
|||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 357 TGTTCCACCCGCGGCTGAAGAAAACCAAAATGGGACAATGGACTTTGGGATGGAAGATGT 416
Query 418 GACCATCAATACAAACTCATACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 477
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GACCATCAACACAAACTCCTACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 476
Query 478 ATACT-CTTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAGAACCACGATGACG 536
||| | | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 477 ATA-TACCTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAAAACCAAGATGACG 535
Query 537 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 595
Query 597 AAAAGAGATCCCGTGCCACATCTACTGATAAAAACAAGAGAGCAAGAGTGAATAAGAGG- 655
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 AAAAAAGATCCCGTGCCACATCTAATGATAAAAACAAGAGAGCAAGAGTGAATAAGAGGA 655
Query 656 GCCCAGAAGAACGTAGAGATGAGTGGGGATAACAATgaaggagaagaggaagaaggagag 715
| |||||||||| |||| |||||||||||||| |||| ||| |||||||||||| | |||
Sbjct 656 G-CCAGAAGAACATAGAAATGAGTGGGGATAATAATGGAGGGGAAGAGGAAGAA-G-GAG 712
Query 716 acgaagttgaagaaaagaaagaaTGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 A-GAAGTTGAAGAAAAGAAAGAATGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 771
Query 776 TTCTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 835
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 831
Query 836 TCTAAGGAAGATGATCCCTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGT 895
|| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 832 TCCAAGGAAGATGATGCCTCAAAGGCCCTCAATCTCAATGGCAAAACCAGAGCCAGTCGT 891
Query 896 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 951
Query 956 AGACTAAGGATTTTACAAAATCTCGTCCCCAATGGAACAAAGGTCGATATTAGTACAATG 1015
||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 952 AGATTAAGGATTTTACAAAATCTCGTCCCTAATGGAACAAAGGTTGATATCAGTACGATG 1011
Query 1016 CTTGAGGAAGCAGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1075
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTTGAGGAAGCTGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1071
Query 1076 GATGATCTATGGATGTATGCGCCGATTGCTTTCAATGGGATGGACATTGGTCTCAGCTCA 1135
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1072 GATGATCTATGGATGTATGCGCCAATTGCTTTCAACGGGATGGACATTGGTCTCAGCTCA 1131
Query 1136 CCGAGATGAAGCAGAAAACTTGTGATTTTAGTTGGATATTTT-CTCTTATATATAACCAA 1194
||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1132 CCGAGATGAAGCACAAAACTTGTGATTTTAGTTGGA-ATTTTTCTCTTATATATAACCAA 1190
Query 1195 AAATGTAATATTCtttttcttttttAATA--TTCTCCGCCTTCGGACGAGTTCGATTATA 1252
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1191 AAATGTAAAATTCTTTT-CTTTTTTAATACATTCTCCGCCTTCGGACGAGTTCGATTATA 1249
Query 1253 AATTCTCGTACGATGTTC 1270
| ||||||||||||||||
Sbjct 1250 ATTTCTCGTACGATGTTC 1267
> Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1
Length=1235
Score = 327 bits (177), Expect = 9e-89
Identities = 243/275 (88%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 853 CTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGTGGTGCAGCCACCGATCC 912
||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| |||||
Sbjct 681 CTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAGCCGCGGCGCTGCCACAGATCC 740
Query 913 TCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAGAGACTAAGGATTTTACA 972
||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 741 TCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCA 800
Query 973 AAATCTCGTCCCCAATGGAACAAAGGT-CGATATTAGTACAATGCTT-GAGGAAGCAGTT 1030
| |||| ||||| |||||||||||||| | ||||||| || ||| || || ||||||||
Sbjct 801 ACATCTTGTCCCTAATGGAACAAAGGTAC-ATATTAGCACGATG-TTGGAAGAAGCAGTA 858
Query 1031 CATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 1090
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CAATACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 918
Query 1091 TATGCGCCGATTGCTTTCAATGGGATGGACATTGG 1125
|||||||| ||||||| ||| || |||||||||||
Sbjct 919 TATGCGCCCATTGCTTACAACGGAATGGACATTGG 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5