BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33880.1 Length=1347 Score E Sequences producing significant alignments: (Bits) Value Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1 1982 0.0 Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1 327 9e-89 > Ahg491291 jgi|Araly1|491291|fgenesh2_kg.7__724__AT4G33880.1 Length=1267 Score = 1982 bits (1073), Expect = 0.0 Identities = 1213/1278 (95%), Gaps = 19/1278 (1%) Strand=Plus/Plus Query 1 ACTTCTCACAAGACTTCCAACTAACAATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ACTTCTCACAAGACTTCCAACTAACGATCTTCTTAATTAAGATTAATCTCTTAATTAAGA 60 Query 61 CGCTTAGTTAACAAAACATATAAAAATGGAAGCCATGGGAGAATGGAGCAACAACCTCGG 120 |||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 61 CGCTTAGTTAACAAAACAAAT-AAAATGGAAGCCATGGGAGAATGGAGCACCAACCTCGG 119 Query 121 AGGAATGTACACTTATGCAACCGAGGAAGCCGATTTCATGAACCAGCTTCTCGCCTCTTA 180 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 120 AGGAATGTACACTTATGCAACCGAGGAGGCCGATTTCATGAACCAGCTCCTTGCCTCTTA 179 Query 181 TGATCATCCTGGCACCGGCTCATCCTCCGGCGCAGCAGCCAGTGGTG---ACCACCAAGG 237 ||||||||||||||||||||||||||| || ||| | || |||||| |||||||||| Sbjct 180 TGATCATCCTGGCACCGGCTCATCCTCTGGTGCA--A-CCGGTGGTGATCACCACCAAGG 236 Query 238 CTTGTATTGGAACCTTGGTTCTCATCACAACCACCTTAGCCTCGTGTCTGAAGCCGGTAG 297 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 237 CTTGTATTGGAACCTTGGTTCTCATCACAACCATCTTAGCCTCGTGTCTGAAGCCGGTAG 296 Query 298 CTTCTGTTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATATTACACCGT 357 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 297 TTTCTGCTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATACTACACCGT 356 Query 358 TGTTCCACCCACGGTTGAAGAGAACCAAAATGAGACAATGGACTTTGGGATGGAAGATGT 417 |||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 357 TGTTCCACCCGCGGCTGAAGAAAACCAAAATGGGACAATGGACTTTGGGATGGAAGATGT 416 Query 418 GACCATCAATACAAACTCATACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 477 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GACCATCAACACAAACTCCTACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAA 476 Query 478 ATACT-CTTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAGAACCACGATGACG 536 ||| | | |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 477 ATA-TACCTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAAAACCAAGATGACG 535 Query 537 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCA 595 Query 597 AAAAGAGATCCCGTGCCACATCTACTGATAAAAACAAGAGAGCAAGAGTGAATAAGAGG- 655 |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 596 AAAAAAGATCCCGTGCCACATCTAATGATAAAAACAAGAGAGCAAGAGTGAATAAGAGGA 655 Query 656 GCCCAGAAGAACGTAGAGATGAGTGGGGATAACAATgaaggagaagaggaagaaggagag 715 | |||||||||| |||| |||||||||||||| |||| ||| |||||||||||| | ||| Sbjct 656 G-CCAGAAGAACATAGAAATGAGTGGGGATAATAATGGAGGGGAAGAGGAAGAA-G-GAG 712 Query 716 acgaagttgaagaaaagaaagaaTGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 775 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 A-GAAGTTGAAGAAAAGAAAGAATGGGGCAATGATGAGTAGACAGAACTCAAGCACCACT 771 Query 776 TTCTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 835 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 TTTTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCC 831 Query 836 TCTAAGGAAGATGATCCCTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGT 895 || |||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 832 TCCAAGGAAGATGATGCCTCAAAGGCCCTCAATCTCAATGGCAAAACCAGAGCCAGTCGT 891 Query 896 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 GGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAG 951 Query 956 AGACTAAGGATTTTACAAAATCTCGTCCCCAATGGAACAAAGGTCGATATTAGTACAATG 1015 ||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| Sbjct 952 AGATTAAGGATTTTACAAAATCTCGTCCCTAATGGAACAAAGGTTGATATCAGTACGATG 1011 Query 1016 CTTGAGGAAGCAGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1075 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 CTTGAGGAAGCTGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCT 1071 Query 1076 GATGATCTATGGATGTATGCGCCGATTGCTTTCAATGGGATGGACATTGGTCTCAGCTCA 1135 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1072 GATGATCTATGGATGTATGCGCCAATTGCTTTCAACGGGATGGACATTGGTCTCAGCTCA 1131 Query 1136 CCGAGATGAAGCAGAAAACTTGTGATTTTAGTTGGATATTTT-CTCTTATATATAACCAA 1194 ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1132 CCGAGATGAAGCACAAAACTTGTGATTTTAGTTGGA-ATTTTTCTCTTATATATAACCAA 1190 Query 1195 AAATGTAATATTCtttttcttttttAATA--TTCTCCGCCTTCGGACGAGTTCGATTATA 1252 |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1191 AAATGTAAAATTCTTTT-CTTTTTTAATACATTCTCCGCCTTCGGACGAGTTCGATTATA 1249 Query 1253 AATTCTCGTACGATGTTC 1270 | |||||||||||||||| Sbjct 1250 ATTTCTCGTACGATGTTC 1267 > Ahg480366 jgi|Araly1|480366|fgenesh2_kg.3__3067__AT2G14760.1 Length=1235 Score = 327 bits (177), Expect = 9e-89 Identities = 243/275 (88%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 853 CTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGTGGTGCAGCCACCGATCC 912 ||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 681 CTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAGCCGCGGCGCTGCCACAGATCC 740 Query 913 TCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAGAGACTAAGGATTTTACA 972 ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 741 TCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCA 800 Query 973 AAATCTCGTCCCCAATGGAACAAAGGT-CGATATTAGTACAATGCTT-GAGGAAGCAGTT 1030 | |||| ||||| |||||||||||||| | ||||||| || ||| || || |||||||| Sbjct 801 ACATCTTGTCCCTAATGGAACAAAGGTAC-ATATTAGCACGATG-TTGGAAGAAGCAGTA 858 Query 1031 CATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 1090 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 CAATACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 918 Query 1091 TATGCGCCGATTGCTTTCAATGGGATGGACATTGG 1125 |||||||| ||||||| ||| || ||||||||||| Sbjct 919 TATGCGCCCATTGCTTACAACGGAATGGACATTGG 953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50398496274 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5