BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33890.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491290 jgi|Araly1|491290|fgenesh2_kg.7__723__AT4G33890.1 2248 0.0
> Ahg491290 jgi|Araly1|491290|fgenesh2_kg.7__723__AT4G33890.1
Length=1531
Score = 2248 bits (1217), Expect = 0.0
Identities = 1446/1551 (93%), Gaps = 38/1551 (2%)
Strand=Plus/Plus
Query 18 AACACGGAGAACCAAAAAACAGAAGAGAAGCG-ATATGAAACGAAGAAACAAACAAGATC 76
|||||||||||||||||||||||||| ||| | | ||||||||||||||||| |||||||
Sbjct 1 AACACGGAGAACCAAAAAACAGAAGACAAGAGAAGATGAAACGAAGAAACAAGCAAGATC 60
Query 77 ATCGTCCCTTTTGCCTTTAGGGCACAAAGGGGAAGCCTTTTTCACTGGGTATGTGTTGAG 136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 A---TCCCTTTTGCCTTTAGGGCACAAAGGGGAAGCCTTTTTCACTGGGTATGTGTTGAG 117
Query 137 AATTTGGGGTTTTTAGGTTTTTGGCTCAGAAGAGAGAATCTGGGATCTTAAAAATCGAAA 196
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 AATTTGGGGGTTTTAGGTTTTTGTTTCAGAAGAGAGAATCTGGGATCTTAAAAATCGAAA 177
Query 197 CTTTCTAGATGTGGTTTTAGTTC-A-AC---T-TAGTTGTAGAAGATGGGATCAAATCAA 250
||||||| ||||||||||||||| | || | ||||||| ||||||||||||| |||||
Sbjct 178 CTTTCTACATGTGGTTTTAGTTCAACACAAGTATAGTTGTTGAAGATGGGATCAGATCAA 237
Query 251 GGTTCTTCCAGGTTAGATACGTTAGAGATTAAAGCTCTCATTTACCGGGAAATTGGGAAT 310
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 238 GGTTCTTCCAGGTTAGATACGTTAGAGATTAAAGCTCTCATTTTGCGGGAAATTGGGCAT 297
Query 311 CAAAGAGCTGAGAGTTACTTCAATCAGCTCGGAAGATTCTTTGCCTTGAAGATCACCAAA 370
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAAAGAGCTGAGAGTTACTTCCATCAGCTCGGAAGATTCTTTGCCTTGAAGATCACCAAA 357
Query 371 TCTGAATTCGACAAGTTGTGCATCAAGACCATTGGTAGACAAAACATCCATCTTCATAAC 430
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGAATTCGACAACTTGTGTATCAAGACCATTGGTAGACAAAACATCCATCTTCATAAC 417
Query 431 CGTCTTATACGTTCCATCATCAAGAATGCTTGTATTGCCAAATCT---CCA-C--CATTT 484
||||||||||| |||||||||||||||||| || |||| || ||| ||| | ||||
Sbjct 418 CGTCTTATACGCTCCATCATCAAGAATGCTAGTGTTGCGAAGTCTCCCCCATCTAGATTT 477
Query 485 ATAAAGAAAGGTGGGAGCTTTGTTAGATTTGGTAATGGGGATTCGAAGAAGAACAGTCAA 544
| ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 478 ACAAAGAAAGGTGGGAGCTTTGTTAGATTTGGTAATGGGAATTC---GAAGAACAATCAA 534
Query 545 ATTCAGCCGCTTCATGGAGATTCTGCGTTTTCTCCTTCGACTCGTAAATGCAGGTCAAGG 604
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 ATTCAGCCGCTTTATGGAGATTCTGCGTTTTCTCCTTCGACTCGCAAATGCAGGTCAAGG 594
Query 605 AAGTTGAGAGACAGGCCAAGTCCACTTGGTCCACTTGGGAAGCCTCATAGTTTAACTACG 664
||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 595 AAGTTTAGAGACAGGCCAAGTCCACTTGGTCCACTTGGGAAGCCTCAGAGTCTAACGACA 654
Query 665 ACGAATGAGGAGTCAATGTCAAAGGCACAAAGTGCTACTGAATTGTTGTCTCTAGGAAGT 724
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACAAATGAGGAGTCGATGTCCAAGGCACAAAGTGCTACTGAATTGTTGTCTCTAGGAAGT 714
Query 725 AGACCTCCCGTGGAAGTTGTGTCTGTGGAGGAAGGAGAAGAAGTTGAACAAATAGCAGGA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGACCTCCCGTGGAAGTTGTGTCTGTGGAGGAAGGAGAAGAAGTTGAACAAATAGCAGGA 774
Query 785 GGAAGTCCAAGTGTTCAGAGCCGGTGTCCTCTCACTGCTCCGCTTGGTGTTTCTATGAGT 844
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 --A-GTCCAAGTGTTCAGAGCCGGTGTCCTCTCACTGCTCCGCTTGGTGTTTCTATGAGT 831
Query 845 CTTAGGAATGGAGCTACTAGAAAGTCTGTTTCCAATGTGTCTATGTGTAGCAGAAGTTTC 904
||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 832 CTTCGGAATGGAGTTACTAGAAAGTCTATTTCCAATGTGTCTATGTGTAGCAGTAGTTTC 891
Query 905 AACCGCGAGACTTGTCAGAACAACGGTGAGCTACCTGATACAAGAACGCTGAGGAGTCGG 964
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 892 AACCGCGAGACTTGTCAAAACAACGGTGAACTACCTGATACAAGAACGCTGAGGACTCGG 951
Query 965 TTGGAGAGGAGATTGGAGATGGAGGGGCTAAAGATAACTATGGACTCTGTTAGTCTTCTT 1024
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 TTGGAGAGGAGATTGGAGATGGAGGGGCTAAAGATAACAATGGACTCTGTTAGTCTTCTT 1011
Query 1025 AATAGCGGATTGGATGTGTTTATGAGAAGGCTGATTGAGCCTTGTTTGAGTTTGGCTAAT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AATAGCGGATTGGATGTGTTTATGAGAAGGCTGATTGAGCCTTGTTTGAGTTTGGCTAAT 1071
Query 1085 ACTCGATGTGGGACTGATCGGGTTAGAGAGATGAATTACCAGTATACACAGCAAAGCAGA 1144
||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1072 ACTCGATATGGGACTGATCGGGTGAGAGAGATGAATTACCAGCATACACAGCAAAGCAGA 1131
Query 1145 AGGCTTTCATATGTATCGATGTCAGATTTTCGTGCTGGTATGGAGTTGAATACTGAGATA 1204
|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1132 AGGCTTTCGTATGTATCGATGTCAGATTTTCGTGCTGGTATGGAGTTGAATCCTCAGATT 1191
Query 1205 CTTGGAGAAGATTGGCCTATGCATATGGAGAAGATCTGCTCCCGTGCTTCAGATAAGTAA 1264
|||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||
Sbjct 1192 CTTGGAGAAGATTGGCCTATAAATATGGAGAAAATCTGTTCCCGTGCTTCAGACAAGTAA 1251
Query 1265 AGAACAAACATCATAGGTTAGATACATAGCATTTGAGTTT--TCTGGTTTGGTTTGC-GC 1321
|||||||||| ||||||||||||||||||||||||| ||| |||| || | ||| | |
Sbjct 1252 AGAACAAACACCATAGGTTAGATACATAGCATTTGATTTTACTCTGATT-GTTTT-CTGG 1309
Query 1322 TGTTGAAAAAAGTTACTGGGATGGTCCAAGTTTCAATGGAAGAAGGTTTTGAAGAGAAGA 1381
| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1310 T-TTGAACAAAGTTACTGGGATGGTTCAAGTTTCAATAGAAGAAGGTTTTGAAGAGAAGA 1368
Query 1382 AGGGTGGGTCTTCTTGATGTTGTACAAGTTCAGATAATAGAGTGAGATTTAAGTAAGAGt 1441
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 1369 AGGGTGGGTCTTCTTGATGTTGTACAAGTTCAGATAGTAGAGTGAGATT-AAGTA-GAGG 1426
Query 1442 tttttttGAAGTAAA-CGACATTTTGTTTAGCTGATTTGTTTTTCTCTCATGTGTATTTT 1500
||||| |||||||| || ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1427 TTTTT--GAAGTAAAACGCCATTT-GTTTAGCTGATTTGTTTTTCTCTC--GTGTATTTT 1481
Query 1501 TCCTT-GTTTGCTCTCTGATGTAAACAAAGTTAATAATGAAAGCAAAAAAG 1550
||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1482 TCCTTTGTTTGCTCTCTGATGTAA-CAAAATTAATAATGAAAGCAAAAAAG 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5