BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33910.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491287 jgi|Araly1|491287|fgenesh2_kg.7__720__AT4G33910.1 1578 0.0
> Ahg491287 jgi|Araly1|491287|fgenesh2_kg.7__720__AT4G33910.1
Length=1027
Score = 1578 bits (854), Expect = 0.0
Identities = 910/937 (97%), Gaps = 4/937 (0%)
Strand=Plus/Plus
Query 97 TCGTTTACGCCGGCGAAGATTTCCATCGGAAACTTAATCTGATCGGAAGGAAGAAGGCTC 156
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 49 TCGTTTACGCCGGCGAAGATTTCCATCGGAAACTTAATCTGATCGGACGGAAGAAGGCTC 108
Query 157 GATGAAGAGCAGATTGAAGAGCTACAGGAGGAAGAAGCTAGGGTTAGCCACAGTTATCGT 216
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 109 GATGAAGAGCAGATTGAAGAGCTACAAGAGGAAGAAGCTAGGGTTAGCCACAGTCATCGT 168
Query 217 CTTCTGTTCTCTCTGTTTCCTCTTCGGTTTCTATGGCTCCACTCTACTTTCTCAGAATGT 276
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 169 CTTCTGTTCTCTCTGTTTCCTCGTCGGTTTCTATGGTTCCACTCTACTTTCTCAGAGTGT 228
Query 277 GCCTCGTGTTAAACCCAGGTTGAGAATGTTGGA-TATGGTTGAGAATGGGGAAGAAGA-A 334
||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||| |
Sbjct 229 GCCTCGTGTTAAACCGAGGTTGAGAATGTTGGAGT-TGGTGGAGAATGGGGAAGAAGATA 287
Query 335 GCTAGCTCGATGCCTCATGGTGTTACTGGAGAAGAATCTATTGGATCGATTCCTTTTCAG 394
|| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 288 -CTGGCTCGATGCCTCATGGTGTTACTGGAGAAGAATCCGTTGGATCAATTCCTTTTCAG 346
Query 395 GTACTTAGTTGGAGACCTAGGGCTATATATTTTCCGAATTTTGCAACTGCAGAACAATGC 454
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 347 GTACTTAGTTGGAGACCTAGGGCTATATATTTTCCGAATTTCGCAACTGGAGAACAATGC 406
Query 455 CAAGCTATTATTGAGAGAGCAAAGGTTAATCTGAAACCTTCTGCTTTGGCTCTCCGGAAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CAAGCTATTATTGAGAGAGCAAAGGTTAATCTGAAACCTTCTGCTTTGGCTCTCCGGAAA 466
Query 515 GGAGAAACTGCTGAGAACACTAAGGGCACTAGAACAAGCTCAGGAACTTTTATCAGTGCT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GGAGAAACTGCTGAGAACACTAAGGGCACTAGAACAAGCTCAGGAACTTTTATCAGTGCT 526
Query 575 TCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATCGCAAGAGCTACGATG 634
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 527 TCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATTGCAAGAGCTACGATG 586
Query 635 ATCCCAAGGTCCCATGGAGAGTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTAT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GTCCCAAGGTCCCATGGAGAGTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTAT 646
Query 695 GATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGATT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGATT 706
Query 755 GCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACCATGTTCCCATTT 814
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GCTTCATTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACCATGTTCCCATTT 766
Query 815 GAGAACGGTTCTAATATGGGCATCGGATACGATTACAAGCAATGTATTGGGTTGAAAGTA 874
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 767 GAGAACGGTTCTAATATGGGCACCGGATACGATTACAAGCAATGCATTGGGTTGAAAGTA 826
Query 875 AAGCCTCGGAAAGGAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGAT 934
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 827 AAGCCTCGGAAAGGAGATGGTCTACTTTTTTATTCCGTGTTTCCAAATGGAACGATTGAT 886
Query 935 CAGACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCAACCAAA 994
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 887 CAGACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCGACCAAA 946
Query 995 TGGATCAGAGACCAAGACCAGGAAGAATAAGTTAGGt 1031
||||||||||||||| |||||||||||||||||||||
Sbjct 947 TGGATCAGAGACCAAAACCAGGAAGAATAAGTTAGGT 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5