BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33920.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491286 jgi|Araly1|491286|fgenesh2_kg.7__719__AT4G33920.1 2516 0.0
> Ahg491286 jgi|Araly1|491286|fgenesh2_kg.7__719__AT4G33920.1
Length=1609
Score = 2516 bits (1362), Expect = 0.0
Identities = 1537/1618 (95%), Gaps = 26/1618 (2%)
Strand=Plus/Plus
Query 2 TCACGCGG-TTTTCTTTTAC--CA-CCACCAACTCAACACACACACGAATCCCTTaaaac 57
|||||||| |||| |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1 TCACGCGGTTTTTTTTTTTCTTTATCCACCAACTCAACACACACACGAATCCCTTAAAAC 60
Query 58 cgatcagatcaaacaaaaacgaacgaatcaaaattcaataaaaaaaaaCCTTTCGATTTC 117
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 61 CGATCAGATCAAACAAAAACGAACGAATCAAAATTCAATCAGAAGAAACCTTTCGATTTC 120
Query 118 TCTCATCCAATCGAAT-CGAAAATCTTGTT-A------TCTCTTTCTCTCTAACTCTACT 169
|||||||||||||||| || |||||||||| | ||||||||||||| |||| |||
Sbjct 121 TCTCATCCAATCGAATCCG-AAATCTTGTTCATTTTGTTCTCTTTCTCTCT-ACTCCACT 178
Query 170 GCACTCAGAATCTCTCTGTATAGAAAAACCCTAAGTAGGTTGTGATGTTGCGAGCTTTAG 229
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 179 GCACTCAGAATCTTTCTGTATAGAAAAACCCTAAGTA-G--GTGATGTTGCGAGCTTTAG 235
Query 230 CACGGCCTCTCGAACGGTGTTTGGGAAGCAGAGCTAGTGGTGATGGTTTACTCTGGCAAT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CACGGCCTCTCGAACGGTGTTTGGGAAGCAGAGCTAGTGGTGATGGTTTACTCTGGCAAT 295
Query 290 CGGAATTGAGACCTCACGCTGGCGGTGATTATTCGATCGCGGTGGTTCAAGCCAATTCCA 349
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CGGAATTGAGACCTCACGCCGGCGGTGATTATTCGATCGCGGTGGTTCAAGCCAATTCCA 355
Query 350 GGCTTGAAGATCAGAGTCAGGTTTTCACATCTTCTTCTGCTACTTACGTCGGTGTATACG 409
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 GGCTTGAAGATCAGAGCCAGGTTTTCACATCTTCTTCTGCTACTTACGTCGGCGTATACG 415
Query 410 ATGGTCATGGTGGACCTGAAGCTTCTAGATTCGTTAACAGACATCTCTTTCCTTATATGC 469
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 ATGGTCATGGTGGACCTGAAGCTTCTAGATTCGTTAATAGACATCTCTTTCCTTATATGC 475
Query 470 ACAAATTTGCAAGAGAACATGGGGGATTATCTGTAGATGTTATCAAAAAGGCATTCAAAG 529
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 476 ACAAATTTGCAAGAGAACATGGGGGACTATCTGTAGATGTTATTAAAAAAGCATTCAAAG 535
Query 530 AAACAGAAGAAGAGTTTTGTGGTATGGTTAAACGATCCCTTCCCATGAAACCGCAAATGG 589
|||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 AAACTGAAGAGGATTTTTGTGGTATGGTTAAACGATCACTTCCCATGAAACCGCAAATGG 595
Query 590 CTACTGTAGGATCTTGCTGTCTTGTTGGTGCAATCTCTAATGACACACTGTATGTTGCTA 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 CTACTGTAGGATCTTGCTGTCTTGTTGGTGCAATCTCTAATGACACACTGTATGTTGCGA 655
Query 650 ATCTTGGGGACTCGAGAGCCGTTCTTGGAAGCGTTGTTTCAGGGGTTGATAGTAATAAAG 709
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 656 ATCTTGGGGACTCGAGAGCCGTTCTTGGAAGCGTTGTTTCAGGGGATGATAGTAATAAGG 715
Query 710 GTGCCGTAGCTGAACGGTTATCTACTGATCATAATGTTGCTGTTGAAGAAGTGAGAAAGG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTGCCGTAGCTGAACGGTTATCTACTGATCATAATGTTGCTGTTGAAGAAGTGAGAAAGG 775
Query 770 AGGTTAAGGCACTTAACCCTGATGACTCACAAATCGTCTTATACACACGTGGAGTTTGGC 829
||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 776 AGGTTAAGGCACTTAACCCCGATGATTCACAAATCGTCATATACACACGTGGAGTTTGGC 835
Query 830 GGATTAAAGGCATTATTCAGGTATCGAGATCAATTGGGGATGTATACTTGAAAAAACCGG 889
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 GGATCAAAGGCATTATTCAGGTATCGAGATCAATTGGGGATGTATACTTGAAAAAACCAG 895
Query 890 AGTATTACAGGGACCCGATTTTCCAGCGACATGGAAATCCCATTCCTTTGAGGAGACCCG 949
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 896 AGTATTACAGGGACCCGATTTTCCAGCAACATGGAAATCCCATTCCTTTGAGGAGACCAG 955
Query 950 CGATGACAGCCGAACCCTCCATTATAGTAAGGAAGCTTAAGCCACAGGACTTGTTTCTGA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGATGACAGCCGAACCCTCCATTATAGTAAGGAAGCTTAAGCCACAGGACTTGTTTCTGA 1015
Query 1010 TATTTGCATCAGATGGTCTCTGGGAACATCTTAGTGATGAAACAGCCGTAGAAATCGTCC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TATTTGCATCAGATGGTCTCTGGGAACATCTTAGTGATGAAACAGCCGTAGAAATCGTCC 1075
Query 1070 TCAAACACCCAAGAACTGGTATTGCCCGAAGACTTGTAAGAGCTGCTCTGGAAGAAGCGG 1129
||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1076 TCAAACACCCAAGAACTGGGATTGCACGAAGACTTGTAAGAGCAGCTCTAGAAGAAGCGG 1135
Query 1130 CAAAGAAGAGAGAAATGAGATATGGAGATATAAAGAAAATAGCCAAAGGAATTCGACGAC 1189
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1136 CAAAGAAGAGAGAAATGAGATATGGAGACATAAAGAAAATAGCCAAAGGAATTCGACGAC 1195
Query 1190 ATTTCCATGACGACATAAGCGTTATTGTAGTTTATCTAGATCAAAACAAAACCAGTTCAT 1249
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1196 ATTTCCATGACGACATAAGCGTTGTTGTAGTTTATCTAGATCAAAAGAAAACCAGTTCAT 1255
Query 1250 CGAATAGTAAATTGGTGAAGCAAGGAGGTATCACCGCTCCACCGGATATCTACTCATTAC 1309
||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1256 CGAATGGTAAATTGGTCCAGCAAGGAGGCATCACCGCTCCACCGGATATCTACTCGTTAC 1315
Query 1310 ACTCTGATGAAGCAGAGCAACGACGGTTACTCAATGTGTTATACTGACTGTTTGATTATG 1369
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1316 ACTCTGATGAAGCAGAGCAACGACGGTTACTGAATGTGTTATACTGACCCTTTGATGATG 1375
Query 1370 GTAAAATGGCTGCTTGGGAAAGATCCGAATAGGGAGAAAACTTGTTTACATATTTGTTTA 1429
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GTAAAATGGTTGATTGGGAAAGATCCGAATAGGGAGAAAACTTGTTTACATATTTGTTTA 1435
Query 1430 TTTGTTTTTCTACGAAGAACTGGtttt-tttt-tttt-ttCAATATTGGAGTTGGATTTG 1486
||||||||||||||||||| || |||| |||| |||| || |||| ||||||||||||||
Sbjct 1436 TTTGTTTTTCTACGAAGAATTG-TTTTATTTTATTTTATTGAATAGTGGAGTTGGATTTG 1494
Query 1487 TATATTCTTTTACCAGCAAAGAAGGTCGAAACCCTTTAGTTTTTGGGCAAAGCAGTTTTG 1546
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1495 TATATTCTTTTACCAGCAAAGAAGGTCGAAACCCTTTTCTTTTGGGGCAAAGCAGTTTTG 1554
Query 1547 CTTTTGACACAAACAATACTTTTGTATGAAAATCTAGTGTGA-AA-CCGTTGAGGACA 1602
||||||||| || ||||||| ||||| |||| |||||||||| || ||||||||||||
Sbjct 1555 CTTTTGACA-AA-CAATACTCTTGTAAGAAA-TCTAGTGTGAGAAACCGTTGAGGACA 1609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5