BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33925.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491285 jgi|Araly1|491285|fgenesh2_kg.7__718__AT4G33925.1 917 0.0
> Ahg491285 jgi|Araly1|491285|fgenesh2_kg.7__718__AT4G33925.1
Length=566
Score = 917 bits (496), Expect = 0.0
Identities = 544/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 36 ACGGAAGAAAAAGCAAAACGATGAACGTCACTCTTTTGGTCGCAGACGCCGTTTGGTCGA 95
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2 ACGGAAGAAAAAGCAAAACGATGAGCGTCACTCTTTTGGTCGCAGACGCCGTTTGGTCGA 61
Query 96 ACATTGAATCAACCGGTTCAGTAACCGAAGAACAGCTCTCAATCTTGCAGCTGTTGTTTG 155
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 62 ACATTGAATCAACCGGTTCAGTAACCGAAGAACAGCTCTCAATCTTGCATTTGTTGTTTG 121
Query 156 GTAAGAATCTTGAGAAAGCCACCAGAATAATCGACAAGAGAGGCGTCAAGAAAATATCTG 215
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 122 GTAAGAATCTTGAGAAAGCCACCAGAATAATCGACAAGAGAGGTGTTAAGAAAATCTCTG 181
Query 216 GCTTACCCAGTGGAAGATCCATCTTTCAGGTTGTGGGGGAATCTCAGAAGAGAGAAGAGT 275
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 182 GCTTACCCAGTGGAAGATCCATCTTTCAGGTTGTGGGAGAATCTCAGAAGAGAGAAGAGT 241
Query 276 ATCTCTGCTTCCCAGGAGATTACTGTGGATGTTATTCTTTCTTCTATGATGTTGTAAGCA 335
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 242 ATCTCTGTTTCCCAGGAGATTACTGTGGATGTTATTCTTTCTTCTATGATGTTGTTAGCA 301
Query 336 GAGGAGAGCACCAATGTTGTAAACATCAATTGGCTGCGAGGTTGGCTTCTTCTTTGGGTA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAGGAGAGCACCAATGTTGTAAACATCAATTGGCTGCGAGGTTGGCTTCTTCTTTGGGTA 361
Query 396 CATACAACGAAATCGAGGTTTCTGATGACCATCTTGCCTTGATGCTCTCAAAGATCTGAA 455
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 362 CATACAGTGGAATCGAGGTTTCAGATGACCATCTTGCCTTGATGCTCTCAAAGATCTGAA 421
Query 456 GCTTTCAATACAACTACATGTCTTAGGCT-TATAAGTGCCAGTAACCTGGGAATGATCTG 514
||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 422 GCTTTCAATACAAGTACATGTCTTAGGCTATATA--TGCCAGTAACCTGGGAATGATCTG 479
Query 515 TGTCTTTGAGAATTATATGGATCAAGATTCTTCACATGTTTGATGAACAATGTTGCTTCA 574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTCTTTGAGAATTATGCGGATCAAGATTCTTCACATGTTTGATGAACAATGTTGCTTCG 539
Query 575 CCTTTTATGTTTAACTTGCTGTATATA 601
||| | ||||||||||||||||||||
Sbjct 540 TCTTCTCTGTTTAACTTGCTGTATATA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5