BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33930.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1 828 0.0
Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1 785 0.0
> Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1
Length=981
Score = 828 bits (448), Expect = 0.0
Identities = 649/740 (88%), Gaps = 37/740 (5%)
Strand=Plus/Plus
Query 313 AGCTCTGGCTCGA-ATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTAC 371
||||||||||| | | |||||||| | ||||||||||||||||||| |||| | || |
Sbjct 259 AGCTCTGGCTC-ACACCATTCAAGCGGCACTGGCTCTACACACAACCGTCATA--GCT-C 314
Query 372 TGGCTCGAACCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTCTGGCTCAAA 431
|||| |||||||||||||||||| ||||||| ||| || || |||||||||| ||
Sbjct 315 TGGCACGAACCATTCAAGCGGCACTGGCTCT--TCAC-AC---AAC-GCTCTGGCTCTAA 367
Query 432 CCACTCAAGCAGCACTGG--C-TCA-A-ACCACTCAAGCAGCACTGGCTCTACA-CA-T- 483
|||||||||| ||||||| | ||| | | || || | ||| | ||||| | | || |
Sbjct 368 CCACTCAAGCGGCACTGGCTCTTCACACAACAGTC-A-TAGCTCGGGCTC-AAACCACTC 424
Query 484 -A--A-C----AATCACAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCTACACAC 534
| | | |||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 425 GAGCATCGTTGAATCACAGCTCTGGCTCAAACCACTCAAACAT-CGTTGGTTCTACATAC 483
Query 535 AA-GAATCACAGCTCTGGCTCAAATCACTCAAGCATCGTTGGTTCTACACACAACAATCA 593
|| | |||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct 484 AACG-GTCACAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTCTACACACAACAATCA 542
Query 594 CAGCTCTGGCTCAAACCACTCCAGCATCACTGGCTCTACACACAACCACACGGCTCCAAT 653
||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||
Sbjct 543 CAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAACCACACGAATCCAAT 602
Query 654 ACCGGCTGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACCGGCTGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATG 662
Query 714 GACAGCAAAGCATGCCCCATTCTACGTCAGCGATGTTCTTGTTTTCAAGTACAACAACGA 773
|| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 663 GAGTTCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAATGA 722
Query 774 TGATCAAACCCAATCCAAGACGAAGCACCGTAACAAGAAGAAGAACGACGTCTACTTGCT 833
||||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 723 TGATCGAACACAATCCATGACGAAGCACCATAGCAAGAAGAAGAACGACGTCTACTTGCT 782
Query 834 CCCAGACATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAGGCAAGAAGCTGGTTGCACG 893
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 783 CCCAGACATGAAGAGCTTCAAGAGATGCGATGTGGCCAGAGGCAAGAAGCTGGTGGCACG 842
Query 894 AGGAGGTTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTAAGGTTCAGACTTACTACTT 953
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 AGGAGGTTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTAAGGTTCAGACTTACTACTT 902
Query 954 CGCCAGTGGAGACCACA-ACGAATGCAACCACAACATGAAATTCTCTGTCCACCCCATTC 1012
|| |||||||||||| | | | ||||||||||||||||| |||||| ||||||| ||||
Sbjct 903 CGTCAGTGGAGACCATATAGGC-TGCAACCACAACATGAAGTTCTCTATCCACCCGATTC 961
Query 1013 CCCGCCCTTCTTCACACTAA 1032
||| |||||||||||| |||
Sbjct 962 CCCACCCTTCTTCACATTAA 981
Score = 684 bits (370), Expect = 0.0
Identities = 528/600 (88%), Gaps = 27/600 (5%)
Strand=Plus/Plus
Query 4 ATGGTTCTTTATTGTGG-ACGTAAGTTACTCGTCGTCCTCATGGTTACTGCGTTCGTGTT 62
|||| ||| ||||| || ||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 1 ATGGGTCTCTATTG-GGCACGTAAGTTACTCGTAGTCCTCCTGGTTACTGCGTTCGTCTT 59
Query 63 CTCCGGGAGTGCTGAAGCATGGAGCTGGAGTTGGGGTTCTGGCCAGTCCGGTTCGAACGG 122
|||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 60 CTCCGGGAGTGCTGAAGCGTGGAGCTGGAGTTGGGGTTCTGACCAATCTGGTTCGAACGG 119
Query 123 GGGTTGGGGATGGAGATCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 179
Query 183 AGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCCGACGGAACAGATAC 242
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AGACTCCAACTCGGATGGTTCAAGTTGGGGTTGGGGATGGAGCTCCGACGGAACAGATAC 239
Query 243 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACA 302
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 240 AAACTGGGGTTGGGGAAGGAGCTCTGGCTCACACCATTCAAGCGGCACTGGCTCTACACA 299
Query 303 CAACGGTCACAGCTCTGGCTCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCA 362
|||| |||| ||||||||| |||| |||||||| | |||||||||| ||||||||| |
Sbjct 300 CAACCGTCATAGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACACAACG--C- 356
Query 363 CACCTCTACTGGCTCGAACCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTC 422
||| ||||| ||||| |||||||||| ||||||| ||||||| || | |||||
Sbjct 357 ----TCT---GGCTCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTC 409
Query 423 TGGCTCAAACCACTCAAGCA--G------CAC---T--GGCTCAAACCACTCAAGCAGCA 469
|||||||||||||| |||| | ||| | |||||||||||||||| || |
Sbjct 410 GGGCTCAAACCACTCGAGCATCGTTGAATCACAGCTCTGGCTCAAACCACTCAAACATCG 469
Query 470 CTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCAT-ACTTGGTTCT 528
||| |||||| | ||| |||||||||||||| ||||||||| ||||| | ||||||||
Sbjct 470 TTGGTTCTACATACAACGGTCACAGCTCTGGCTTAAACCACTCGAGCATCA-TTGGTTCT 528
Query 529 ACACACAAGAATCACAGCTCTGGCTCAAATCACTCAAGCATCGTTGGTTCTACACACAAC 588
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 ACACACAACAATCACAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAAC 588
Score = 134 bits (72), Expect = 2e-30
Identities = 226/294 (77%), Gaps = 35/294 (12%)
Strand=Plus/Plus
Query 262 AGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGC 321
||||||||| | |||||||||||||||||||| ||| ||||| | || ||||||||
Sbjct 310 AGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACAC-A-----AC-GCTCTGGC 362
Query 322 TCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTACTGGCTCGAAC 381
|| || || ||||| | |||||||||| |||||||| |||| | || | ||||| |||
Sbjct 363 TCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATA--GCT-CGGGCTCAAAC 419
Query 382 CATTC-A--AGCG--GCAAT---GGCTCTAGACAC-AA-CGGT--TACAGC-TCTGG--C 426
|| || | | || | ||| ||||| | | | || | | ||| | | ||| |
Sbjct 420 CACTCGAGCATCGTTG-AATCACAGCTCT-GGCTCAAACCACTCAAACATCGT-TGGTTC 476
Query 427 T-CAAACCAC--TCAAGCAGCACTGGCTCAAACCACTCAAGCAGCACTGGCTCTACACAT 483
| || || || || | |||| |||||| ||||||||| |||| || ||| ||||||||
Sbjct 477 TACATACAACGGTC-A-CAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTCTACACAC 534
Query 484 AACAATCACAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCTACACACAA 536
||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 535 AACAATCACAGCTCTGGCTCAAACCACTCAAGCAT-CGTTGGTTCTACACACAA 587
> Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1
Length=951
Score = 785 bits (425), Expect = 0.0
Identities = 639/733 (87%), Gaps = 51/733 (7%)
Strand=Plus/Plus
Query 312 CAGCTCTGGCTCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTAC 371
|||||||||||| || |||||||||| |||||| ||||||||||||||||||| || |
Sbjct 258 CAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACACAACGGTCACA--GCT-C 314
Query 372 TGGCTCGAACCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTCTGGCTCAAA 431
|||||||||||||||||| |||| ||||||| |||| || | | | ||
Sbjct 315 TGGCTCGAACCATTCAAGAGGCACTGGCTCT--ACAC-AC----A-A---C-GG------ 356
Query 432 CCACTCAAGCAGCACTGGCTCAAACCACTCAAGCAGCACTGGCTCTACACATAACAATCA 491
|| | |||| ||||||||||||| |||||| ||||||||||||||| || | |
Sbjct 357 ----TC-A-CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACAC---AC-A--A 404
Query 492 CAGCTCTGGCTCAAACCACTCAAGCATAC-TTGGTTCTACACACAAGAATCACAGCTCTG 550
| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 405 C-GCTCTGGCTCAAACCACTCAAGCAT-CGTTGGTCCTACACACAAGAATCACAGCTCTG 462
Query 551 GCTCAAATCACTCAAGCATCGTTGGTTCTACACACAACAATCACAGCTCTGGCTCAAACC 610
||||||| |||||||||||| ||||| |||| |||||| ||||| ||||||||||||||
Sbjct 463 GCTCAAACCACTCAAGCATCATTGGTCCTACCCACAACGGTCACAACTCTGGCTCAAACC 522
Query 611 ACTCCAGCATCACTGGCTCTACACACAAC---CACA---C-GGCTCCAATACCGGCTGGA 663
|||| |||||| ||| |||||||||||| |||| | |||| ||| ||| || |
Sbjct 523 ACTCAAGCATCGTTGGTTCTACACACAACGGTCACAGCTCGGGCT-CAA-ACC-ACT-CA 578
Query 664 AG-A--A-AGATTGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATGGACAGC 719
|| | | ||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 579 AGCATCATTGATTGCGGTTACTGTATGGGAAAACGGATACGGTTACACAGAATGGACTGC 638
Query 720 AAAGCATGCCCCATTCTACGTCAGCGATGTTCTTGTTTTCAAGTACAACAACGATGATCA 779
||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||
Sbjct 639 AAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAACAATGACCA 698
Query 780 AACCCAATCCAAGACGAAGCACCGTAACAAGAAGAAGAACGACGTCTACTTGCTCCCAGA 839
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 699 AACCCAATCCAAGACAAAGCACCACAACAAGAAGAAGAACGACGTCTACTTGCTCCCAGA 758
Query 840 CATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAGGCAAGAAGCTGGTTGCACGAGGAGG 899
|||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 759 CATGAAGAGCTTCAGGAGATGCGATGTGGCCAGAGGCAAGAAGCTGGTGGCACGAGGTGG 818
Query 900 TTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTAAGGTTCAGACTTACTACTTCGCCAG 959
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 819 TTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTAAGGTTCAGACTTACTACTTCGCCAG 878
Query 960 TGGAGACCACAACGAATGCAACCACAACATGAAATTCTCTGTCCACCCCATTCCCCGCCC 1019
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 879 TGGAGACCACAACGGCTGCAACCACAACATGAAGTTCTCTGTCCACCCCATTCCCCACCC 938
Query 1020 TTCTTCACACTAA 1032
|||||||||||||
Sbjct 939 TTCTTCACACTAA 951
Score = 704 bits (381), Expect = 0.0
Identities = 536/604 (89%), Gaps = 38/604 (6%)
Strand=Plus/Plus
Query 21 ACGTAAGTTACTCGTCGTCCTCATGGTTACTGCGTTCGTGTTCTCCGGGAGTGCTGAAGC 80
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 18 ACGTAAGTTACTCGTAGTCCTCATGGTTTCTGCGTTCGTCTTCTCCGGGAGTGCTGATGC 77
Query 81 ATGGAGCTGGAGTTGGGGTTCTGGCCAGTCCGGTTCGAACGGGGGTTGGGGATGGAGATC 140
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 78 GTGGAGCTGGAGTTGGGGTTCTGACCAGTCCGGTTCGAACGGGGGTTGGGGATGGAGCTC 137
Query 141 CGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTCAGACTCCAACTCGGGTGG 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 138 CGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTCAGACTCCAACTCGGATGG 197
Query 201 TTCAAGCTGGGGTTGGGGATGGAGCTCCGACGGAACAGATACAAACTGGGGTTGGGGAAG 260
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 198 TTCAGGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATACAAACTGGGGTTGGGGAAG 257
Query 261 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 320
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 258 CAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 317
Query 321 CTCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTACTGGCTCGAA 380
|||||| |||||||| | |||||||||||||||||||||||||| |||| ||||| ||
Sbjct 318 CTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCACAGCTCT---GGCTCAAA 374
Query 381 CCATTCAAGCGGCAATGGCTCTAGACACAACGGTTACAGCTCTGGCTCAAACCACTCAAG 440
|||||||||||||| |||||||| |||||||| | ||||||||||||||||||||
Sbjct 375 CCATTCAAGCGGCACTGGCTCTACACACAACG----C---TCTGGCTCAAACCACTCAAG 427
Query 441 CAGCACTGGCTCAAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGG 500
|| | | | | | | | | ||||||| || ||||||||||||||
Sbjct 428 CATC---G--T--------T---G--G---T--C-CTACACACAAGAATCACAGCTCTGG 463
Query 501 CTCAAACCACTCAAGCAT-ACTTGGTTCTACACACAA-GAATCACAGCTCTGGCTCAAAT 558
|||||||||||||||||| | ||||| |||| ||||| | ||||| ||||||||||||
Sbjct 464 CTCAAACCACTCAAGCATCA-TTGGTCCTACCCACAACGG-TCACAACTCTGGCTCAAAC 521
Query 559 CACTCAAGCATCGTTGGTTCTACACACAACAATCACAGCTCTGGCTCAAACCACTCCAGC 618
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 522 CACTCAAGCATCGTTGGTTCTACACACAACGGTCACAGCTCGGGCTCAAACCACTCAAGC 581
Query 619 ATCA 622
||||
Sbjct 582 ATCA 585
Score = 183 bits (99), Expect = 2e-45
Identities = 252/318 (79%), Gaps = 42/318 (13%)
Strand=Plus/Plus
Query 261 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 320
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 309 CAGCTCTGGCTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 368
Query 321 CTCGAATCATTCAAGTGCCACTGGCTCTACACACAACGGTCACACCTCTACTGGCTCGAA 380
||| || |||||||| | |||||||||||||||||||| | ||| ||||| ||
Sbjct 369 CTCAAACCATTCAAGCGGCACTGGCTCTACACACAACG--C-----TCT---GGCTCAAA 418
Query 381 CCATTCAAGCGGCAATGGCTC-TAGACACAACGGTT-ACAGCTCTGGCTCAAACCACTCA 438
||| |||||| | ||| || || |||||| | | |||||||||||||||||||||||
Sbjct 419 CCACTCAAGCATCGTTGG-TCCTACACACAA-GAATCACAGCTCTGGCTCAAACCACTCA 476
Query 439 AGCAGCACTGGCTCAAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCT 498
|||| || ||| || ||| | | || || || || ||| | | || |
Sbjct 477 AGCATCATTGG-TCCTACC-C--A--CA--AC-GG-TC-ACA-A---C--TC-----T-- 512
Query 499 GGCTCAAACCACTCAAGCATAC-TTGGTTCTACACACAA-GAATCACAGCTCTGGCTCAA 556
|||||||||||||||||||| | |||||||||||||||| | ||||||||| |||||||
Sbjct 513 GGCTCAAACCACTCAAGCAT-CGTTGGTTCTACACACAACGG-TCACAGCTCGGGCTCAA 570
Query 557 ATCACTCAAGCATCGTTG 574
| |||||||||||| |||
Sbjct 571 ACCACTCAAGCATCATTG 588
Score = 128 bits (69), Expect = 8e-29
Identities = 149/185 (81%), Gaps = 16/185 (9%)
Strand=Plus/Plus
Query 261 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 320
||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 360 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACG--C-----TCTGG 412
Query 321 CTCGAATCATTCAAGTGCCACTGGCTC-TACACACAACGG-TCACACCTCTACTGGCTCG 378
||| || || ||||| | ||| || ||||||||| | ||||| |||| |||||
Sbjct 413 CTCAAACCACTCAAGCATCGTTGG-TCCTACACACAA-GAATCACAGCTCT---GGCTCA 467
Query 379 AACCATTCAAGCGGCAATGGCTC-TAGACACAACGGTTACAGCTCTGGCTCAAACCACTC 437
||||| |||||| || ||| || || ||||||||| ||| ||||||||||||||||||
Sbjct 468 AACCACTCAAGCATCATTGG-TCCTACCCACAACGGTCACAACTCTGGCTCAAACCACTC 526
Query 438 AAGCA 442
|||||
Sbjct 527 AAGCA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5