BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33945.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328350 jgi|Araly1|328350|fgenesh1_pm.C_scaffold_7000577 2010 0.0
> Ahg328350 jgi|Araly1|328350|fgenesh1_pm.C_scaffold_7000577
Length=2052
Score = 2010 bits (1088), Expect = 0.0
Identities = 1206/1264 (95%), Gaps = 4/1264 (0%)
Strand=Plus/Plus
Query 203 TTGGGATCATTACATGTGTTCCTGGAGAAAGTAGCGTTAAGGACAATCCGGTGATTGCTT 262
||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 791 TTGGGATCATTACTTGTGTTCCAGGAGAAAGTAGCATTAAGGACAATCCGGTTATTGCTT 850
Query 263 GTTTAGATAGACTAAAAGAATTCGACAGTGTTTCAATAGACGGACCTCTTCGAGATGAGG 322
| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 851 GCTTAGATAGACTTAAAGAATTCGATAGTGTTTCTATTGACGGACCTCTTCGAGATGAGG 910
Query 323 TTTTCGATGAGATATCGAGTTTGTTCAAGAATCTCAATGAGCTTTGTAGCAGCCAAGAAT 382
||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 911 ATTTCGATGAGATATCTAGTCTGTTCAACAATCTCAATGAGCTTTGTAGCAGCCAAGAAT 970
Query 383 CAGGGAACGCTGCAATTGCGACAAAACATGGTGCTGTGGATTTAACTTGCTCGATTTGTT 442
|||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 971 CAGGGAACGCAGCTATTGCGATAAAACACGGTGCTGTGGATTTAACTTGCTCGATTTGTT 1030
Query 443 CCAAAATCAAGATATCTACTAGAAGTAATCGTGTTCTTGTTCCTTGCTTT-AAGGCTTTG 501
|||||||||||| |||||||||||||||||| ||| |||||||||| ||| |||||||||
Sbjct 1031 CCAAAATCAAGACATCTACTAGAAGTAATCGCGTTGTTGTTCCTTG-TTTCAAGGCTTTG 1089
Query 502 GCTGTGTTGATCCGTGACATTCAGAGCACAGAGA-GATTCAGGAATTGTACTGGACCAAA 560
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1090 GCTGTGTTGATCCGTGACATTCAGAGCACAGAGATG-TTCAGGAATTGTACCGGACCAAA 1148
Query 561 TATCGTTGTTGATCTCTTAAATGATTCCAGCTCCGATTCTGATTTGTTAGATGCTGGTTT 620
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1149 TATCGTTGTTGATCTCTTACGTGGTTCCAGCTCCGATTCTGATTTGTTAGATGCTGGTTT 1208
Query 621 TGCGGTTGTTGCTGCTGCAGCAACTGGTAATGAAGTTGTGAAACAGTTATTCATGGAACT 680
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1209 TGCGGTTGTTGCTGCTGCAGCAACTGGTAATGAAGTCGTCAAGCAGTTATTCATGGAACT 1268
Query 681 GAAAATCGATGAACTTATTCTGCAAGTGTTGAATAGAGAGAGTAAAACTACCATTAGAGC 740
||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 1269 GAAAATCGATGAATTTATTCTGCAAGTGCTCAGTAGAGAGAGTAAAACTACCATTAGAGC 1328
Query 741 TCTGTACGATGCTATTTGTGCTCTTTTGACTCCAGATGACTTCCGTGTTGTTGCTTCCCA 800
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1329 TCTGTACGATGCTATTTGTGCTCTTTTGACTCCAGATGACTACCGTGTTGTTGCTTCCCA 1388
Query 801 AGTTTATGGTTATGCACGAACTTTTGCCAAATTAGGGATTGCGACAGCCCTCACTGAAGC 860
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1389 AGTTTATGGTTATGCACGAACTTTCGCCAAATTAGGGATTGCAACAGCCCTCACTGAAGC 1448
Query 861 ATTACAGGCAGGGATTGGCTCTGATAGTTTGGTGTCAGCAAGTACTGCGTTAAAAGCAAT 920
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1449 ATTACAGGCAGGAATTGGCTCTGATAGCTTGGTGTCAGCAAGTACTGCGTTAAAAGCAAT 1508
Query 921 TGCTGTCAATGATGAAATATGTAAATCTATTGCTGAATCCGGTGGAATAGATACACTTCT 980
|||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1509 TGCTGTAAATGATGAAATATGTAAATCTATTGCCGAAACTGGTGGAATAGATACACTTCT 1568
Query 981 TCGGTGTATTGATGATAGCGGTGAGCAAGGCAACAAAACTGCTGCTAAGACATGTTGTTC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 TCGGTGTATTGATGATAGCGGTGAGCAAGGCAACAAAACTGCTGCTAAGACATGTTGTTC 1628
Query 1041 CCTGTTGTCTAAGTTGGCAGGAAGTGACTCTAACAAGAGTACCATAGTTGAGAAGCAAGG 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1629 CCTGTTGTCTAAGTTGGCAGGAAGTGACTCTAACAAGAGTACCATAGTTGAGAAGCGAGG 1688
Query 1101 TCTGGACAAGCTAATCACACTCGCACTACGATTCTCTGATGATCCTCTAGTCATACAAGA 1160
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1689 TCTTGACAAGCTAATCACACTCGCACAACGATTCTCTGACGATCCTCTAGTCATACAAGA 1748
Query 1161 GGTGATGTTGATAATCTCTATAATCTGTCTGAGATCACCAGACCACGCAGCCAAGGCTAT 1220
||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1749 GGTCATGTTGATAATCTCTATAATCTGTTTGAGATCACCAGACCACGCTGCCAAGGCTAT 1808
Query 1221 AGAAGCTGGAGCTGGTGATCTAGCGGTCCAAGCAATGAAGAGGTTCCCAGTAGCTGCTCA 1280
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1809 AGAAGCTGGAGCTGGTGATCTAGCAGTCCAAGCTATGAAGAGGTTCCCAGTAGCTGCTCA 1868
Query 1281 AATGCAGAGAAACGCTTGCAACATGATACGGAACATTGCTGTCAGAAGTGCAGAGAACAG 1340
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1869 AATGCAGAGAAACGCTTGCAACATGATACGGAACATTGCTGTAAGAAATGCAGAGAACAG 1928
Query 1341 AACTATTCTGCTTGCTAATGGAATCGAGAAGCTGATAAGAACTGCTAAAGCCAACAATGA 1400
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1929 AACTATTCTGCTTGCTAATGGAATTGAGAAGCTGATAAGGACTGCTAAGGCCAACAATGA 1988
Query 1401 GACATGCAGAGCCGCTGCAACTGATGCACTGAGAGACCTTGGCCTTGATAACTACAATAA 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 GACATGCAGAGCCGCTGCAACTGATGCACTGAGAGACCTTGGCCTTGATAACTACAATAA 2048
Query 1461 CTAA 1464
||||
Sbjct 2049 CTAA 2052
Score = 191 bits (103), Expect = 2e-47
Identities = 114/119 (96%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 19 TTGAAAACCATCTTTTCCGATCTATCGAATCGGAGCGGCGAAGGAAGGAGAATGGGTGTC 78
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 677 TTGAAAACCAT-TTTTCCGATCTATCAAATCGGAGCGGCGGAGGAAGGAGAATGGGTGTC 735
Query 79 CGTACAATATCTCAGGAGGCATTCGACGATCTGGTTAGGGAAAATGTTGAAGATCTTGG 137
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 CGTGCAATATCTCAGGAGGCATTCGACGATCTCGTTAGGGAAAATGTTGAAGATCTTGG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5