BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33950.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491280 jgi|Araly1|491280|fgenesh2_kg.7__713__AT4G33950.1 1984 0.0
> Ahg491280 jgi|Araly1|491280|fgenesh2_kg.7__713__AT4G33950.1
Length=1261
Score = 1984 bits (1074), Expect = 0.0
Identities = 1210/1271 (95%), Gaps = 27/1271 (2%)
Strand=Plus/Plus
Query 86 AGAGACAGAGGAAAGAGGGGGAGAAAATGGATCGACCAGCAGTGAGTGGTCCAATGGATT 145
|||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 1 AGAGACAGAGGAAAGA--GGTAAAAAATGGATCGACCAGCAGTGAGTGGTCCTATGGATT 58
Query 146 TGCCGATTATGCACGATAGTGATAGGTATGAACTCGTCAAGGATATTGGCTCCGGTAATT 205
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 TGCCGATTATGCACGATAGCGATAGGTATGAGCTCGTCAAGGATATTGGCTCCGGTAATT 118
Query 206 TTGGAGTTGCGAGATTGATGAGAGACAAGCAAAGTAATGAGCTTGTTGCTGTTAAATATA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGGAGTTGCGAGATTGATGAGAGACAAGCAAAGTAATGAGCTTGTTGCTGTTAAATATA 178
Query 266 TCGAGAGAGGTGAGAAGATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCT 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCGAGAGAGGTGAGAAGATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCT 238
Query 326 TAAGACATCCCAATATCGTTA-GATTCAAAGAGGTTATATTAACACCAACCCATTTAGCC 384
|||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct 239 TAAGACATCCCAATATCG-TACGATTCAAAGAGGTCATATTAACACCATCCCATTTAGCC 297
Query 385 ATTGTTATGGAATATGCATCTGGAGGAGAACTTTTCGAGCGAATCTGCAATGCAGGCCGC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTGTTATGGAATATGCATCTGGAGGAGAACTTTTCGAGCGAATCTGCAATGCAGGCCGC 357
Query 445 TTCAGCGAAGACGAGGCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCAGCGAAGACGAGGCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGT 417
Query 505 CATGCTATGCAAGTATGTCACCGAGACTTAAAGCTCGAGAATACGTTATTAGATGGTAGC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CATGCTATGCAAGTATGTCACCGAGACTTAAAGCTCGAGAATACGTTATTAGATGGTAGC 477
Query 565 CCGGCCCCTCGTCTAAAGATATGTGATTTCGGATATTCTAAGTCATCAGTGTTACATTCG 624
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 CCGGCCCCTCGTCTAAAGATTTGTGATTTCGGATATTCTAAGTCATCAGTCTTACATTCG 537
Query 625 CAACCAAAATCAACTGTTGGAACTCCTGCTTACATCGCTCCTGAGGTTTTACTAAAGAAA 684
|| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 538 CAGCCAAAATCAACTGTTGGAACTCCTGCATATATCGCTCCCGAGGTTTTACTAAAGAAA 597
Query 685 GAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGGGTTACTCTGTATGTCATGCTG 744
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GAATATGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGGGTTACTCTGTACGTCATGCTG 657
Query 745 GTTGGAGCATATCCTTTCGAAGATCCCGAGGAACCAAAGAATTTCAGGAAAACTATACAT 804
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTGGAGCGTATCCTTTCGAAGATCCCGAGGAACCAAAGAATTTCAGGAAAACTATACAT 717
Query 805 AGAATCCTGAATGTTCAGTATGCTATTCCGGATTATGTTCACATATCTCCTGAATGTCGC 864
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGAATCCTGAATGTTCAGTACGCTATTCCGGATTATGTTCACATATCTCCTGAATGTCGC 777
Query 865 CATTTGATCTCCAGAATATTTGTTGCTGACCCTGCAAAGAGGATATCAATTCCTGAAATA 924
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CATTTGATCTCAAGAATATTTGTCGCTGACCCTGCAAAGAGGATATCAATTCCTGAAATA 837
Query 925 AGGAACCATGAATGGTTTCTAAAGAATCTACCGGCAGATCTAATGAACGATAACACGATG 984
|| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 838 AGTAACCACGAATGGTTTCTGAAGAATCTACCGGCAGATTTAATGAACGATAACACGATG 897
Query 985 ACCACTCAGTTTGATGAATCGGATCAACCGGGCCAAAGCATAGAAGAAATTATGCAGATC 1044
| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 898 AACAGTCAGTTTGATGAATCGGATCAACCGGGCCAAAGCATAGAAGAGATCATGCAGATC 957
Query 1045 ATTGCAGAAGCAACTGTTCCTCCTGCAGGCACTCAGAATCTGAACCATTACCTCACAGGA 1104
||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 958 ATTGCAGAAGCGACTGTTCCTCCTGTAGGCACTCAGAATCTGAACCATTATCTCACAGGA 1017
Query 1105 AGCTTGGACATAGATGACGATATGGAGGAAGACTTAGAGAGCGACCTTGATGATCTTGAC 1164
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 AGCTTGGACATAGATGACGATATGGAGGAAGACCTAGAGAGCGACCTTGATGATCTTGAC 1077
Query 1165 ATCGACAGTAGCGGAGAGATTGTGTACGCAATGTGATACTATATATCTATTTGCATGGTT 1224
|| ||||||||||||||||||||||||||||||||||||||| | |||| | | ||
Sbjct 1078 ATTGACAGTAGCGGAGAGATTGTGTACGCAATGTGATACTATCT--CTAT--G---G-TT 1129
Query 1225 TCTGCTACAAAAATGTC-AAACAAAAAATGTTGAAGAA---T-AAGATTAA--GA-T--G 1274
||||||||||||||||| ||| |||||| ||||||||| | |||| ||| || | |
Sbjct 1130 TCTGCTACAAAAATGTCCAAA-AAAAAA-GTTGAAGAAGAATGAAGAATAACTGAATAAG 1187
Query 1275 -T-T-TTGCTTGCTATTGAGTTGGCCCAACTTTGTCTCAATGAGTACACTTTGAATCTTT 1331
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1188 ATATCTTGCTTGCTATTGAGTTGGCCCAACTTTGTCTCAATGGGTACACTTTGAATCTTT 1247
Query 1332 GATATGCAAAA 1342
|||||||||||
Sbjct 1248 GATATGCAAAA 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5