BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33960.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944520 jgi|Araly1|944520|scaffold_700749.1 366 6e-101
> Ahg944520 jgi|Araly1|944520|scaffold_700749.1
Length=254
Score = 366 bits (198), Expect = 6e-101
Identities = 229/244 (94%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 8 aaaaaaaaaaCAGAGAAAAATGGTGATAAAAAGGATAGAGCTGTGTATAGAGCTAATGAA 67
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 AAAAAAAAAACAAAGAAAAATGGTGATAAAAAGGATAGAGCTGTGTATAGAGCTAATGAA 71
Query 68 GATAGGTATGGAGTTTGTAGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAACA 127
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 72 GATAGGAATGGAGTTTGTGGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAGCA 131
Query 128 CCTCAACCACCGTGCTCCACCTCCTCCGCCTGTCCTCCGCCAGGGTCTTCTCCCTTATAC 187
||||||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct 132 CCTCAACCACCGTGCTCCACCTCCTCCGCCTCTCCTCCGCCATGGCCTCCTCCCTTATAC 191
Query 188 CGCTTCTTACCCTTCTCCATTCCTATTTGGATTTCTCCCTTGAATACCTTTTTCTTGTTA 247
|||||| ||||||||||| ||||| |||||||| |||||||||| ||||||| |||| ||
Sbjct 192 CGCTTCATACCCTTCTCCGTTCCTCTTTGGATTCCTCCCTTGAAAACCTTTT-CTTGCTA 250
Query 248 TGAA 251
||||
Sbjct 251 TGAA 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14880679710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5