BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33970.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491276 jgi|Araly1|491276|fgenesh2_kg.7__709__AT4G33970.1 2344 0.0
Ahg906331 jgi|Araly1|906331|Al_scaffold_0003_3459 894 0.0
> Ahg491276 jgi|Araly1|491276|fgenesh2_kg.7__709__AT4G33970.1
Length=2058
Score = 2344 bits (1269), Expect = 0.0
Identities = 1767/2000 (88%), Gaps = 64/2000 (3%)
Strand=Plus/Plus
Query 1 ATGCCCTTCTATAAGCAGCCTTGGGTCTTTTCCAAGGTTTTTGTTTTAGCCATGGCTAAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCTTCTATAAGCAGCCTTGGGCCTTTTCCAAGGTTTTTGTTTTAGCCATGGCTAAA 60
Query 61 CCTCCGTCCTTTGGCTGCTGcttcttcctcttattcttctccttcttatcttcttccttT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCGTCCTTTGGCTGCTGCTTCTTCCTCTTATTCTTCTCCTTCTTATCTTCTTCCTTT 120
Query 121 GTCTCATTTGCCCTAACCGATACAGAAGCTGCCTTCATTGTGCAGCGACAACTTTTAACG 180
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 121 GTCTCATTTGCCCTAACCGATACAGAAGCTGCCTTCATTGTTCAGCGACAGCTCTTAACC 180
Query 181 TTACCAGACAACGGCGAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCTACC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTACCAGACAACGGCGAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCTACA 240
Query 241 TTTGCCAACACCAGGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGCCAACACCAGGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATA 300
Query 301 TTTTCAGACCCATTTAACACCACGGGGAACTGGCATGGCCCACACGTGTGCGGCTACACC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 301 TTTTCAGACCCATTTAACACCACGGGGAACTGGCATGGCCCGCACGTGTGCAGCTACACC 360
Query 361 GGTGTGGTTTGTGCGCCAGCTCTTGATGATTCCGATGTCACGGTTGTAGCTGGTGTTGAC 420
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGTGTGGTTTGTGCGCCGGCTCTTGATGATTCCGATGTCACAGTTGTAGCTGGTGTTGAC 420
Query 421 CTCAACGGTGCGGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACAGATGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTCAACGGTGCGGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACGGATGTT 480
Query 481 GCAATGTTCCATTTGAATTCAAACCGGTTTTGTGGGATCATACCTAAAAGCTTTGAGAAG 540
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GCTATGTTCCATTTGAATTCAAACCGGTTTTGCGGGATCATACCTAAAAGCTTTGAGAAG 540
Query 541 CTAAAGCTAATGCACGAATTCGATGTTAGTAACAACCGTTTCGTTGGACCTTTCCCTAAC 600
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGAAGCTAATGCACGAATTCGATGTTAGTAACAACCGTTTCGTTGGACCTTTCCCTAAA 600
Query 601 GTCGTTCTCTCTTGGCCTGATGTCAAATAC-TTCGACCTTAGGTTCAACGATTTCGAAGG 659
||||| || ||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 601 GTCGTCCTTTCTTGGCCTAATGTCAAATACATT-GACCTTAGGTTCAACGATTTCGAAGG 659
Query 660 TCAAGTCCCTCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAAGTCCCTCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAG 719
Query 720 ATTCACCTCGGTGATTCCTGAATCTCTAGGGGAATCTCCGGCCTCGGTTGTGACTTTTGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTCACCTCGGTGATTCCTGAATCTCTAGGGGAATCTCCGGCCTCGGTTGTGACTTTTGC 779
Query 780 TAACAATAAATTCACCGGATGTATCCCTAAGAGTATCGGAAACATGAAGAATCTCAACGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAACAATAAATTCACCGGATGTATCCCTAAGAGTATCGGAAACATGAAGAATCTCAACGA 839
Query 840 GATTGTCTTTATGGACAATGATTTAGGAGGTTGTTTCCCATCTGAAATCGGAAAGTTATC 899
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 840 GATTGTCTTTATGGACAATGATTTGGGAGGTTGTTTCCCATCTGAAATTGGGAAGTTATC 899
Query 900 GAATGTAACGGTTTTCGATGCAAGCAAGAACTCGTTCATAGGTCGTCTCCCGACTAGCTT 959
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 900 TAATGTAACGGTTTTCGATGCAAGCAAGAACTCGTTTATAGGTCGTCTCCCGACTAGTTT 959
Query 960 TGTCGGGTTAACGAGCGTGGAGGAAATTGATATCTCCGGGAACAAACTCACCGGACTTGT 1019
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 TGTCGGGTTAACGAGTGTGGAGGAATTTGATATCTCCGGGAACAAACTCACCGGACTTGT 1019
Query 1020 ACCGCATAACATTTGCCAGTTGCCTAATTTGGTGAACTTGACTTATTCTTACAATTACTT 1079
|||| ||||||||||| | |||||||||||||||||||| ||||| || |||||||||||
Sbjct 1020 ACCGGATAACATTTGCAACTTGCCTAATTTGGTGAACTTCACTTACTCCTACAATTACTT 1079
Query 1080 CAGTGGACAAGGAGGTTCTTGTGTTCCAGGTGGTAGTCGCAAGGAGATTGCGTTGGATGA 1139
|| ||||||||| ||||| ||||||||||||||| ||||||||||| |||| ||||| ||
Sbjct 1080 CAATGGACAAGGTGGTTCGTGTGTTCCAGGTGGTGGTCGCAAGGAGGTTGCATTGGACGA 1139
Query 1140 CACACGCAATTGCTTGGCTTCTCGACCTGAGCAACGATCCGCCCAAGAATGTGCGGTTGT 1199
|||||| ||||||||| || |||||||||| ||||||||| |||||||||||||||||||
Sbjct 1140 CACACGTAATTGCTTGCCTGCTCGACCTGACCAACGATCCTCCCAAGAATGTGCGGTTGT 1199
Query 1200 GATCAACCGCCCGGTTGATTGTAGCAAGGACAAGTGCGCTGGTGGC-----T-----CT- 1248
|||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 1200 GATCAACCGCCCGGTTGATTGTAGCAAGGATAAGTGCGCTGGTGGCGGAGGTGGTGGCTC 1259
Query 1249 -TCTACTCCATCGAAACCATCACCGGTTCACAAACCAACGCCAGTTCCAACTACGCCGGT 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATCTACTCCATCGAAACCATCACCGGTTCACAAACCAACGCCAGTTCCAACTACGCCGGT 1319
Query 1308 TCACAAACCAACACCAGTTCCAACTACGCCGGTTCAAAAACCATCGCCAGTTCCAACTAC 1367
|| ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1320 TCCCAAACCAACGCCAGTTCCTACTACGCCGGTTCACAAACCATCGCCAGTACCAACTAC 1379
Query 1368 ACCGGTTCAAAAACCATCGCCAGTTCCAACAACCCCTGTTCACGAACCATCGCCAGTTTT 1427
|| ||||| |||||| ||||||||||||| || || |||||| ||||||||||| ||
Sbjct 1380 GCCCGTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCATCGCCA-TTCC 1438
Query 1428 AGCTACGCCGGTTGACAAACCATCGCCAGTTCCATCTCGGCCGGTTCAAAAACCACAACC 1487
| ||||||| |||||||||||||||||| ||||| ||| ||| |||| | | |
Sbjct 1439 AACTACGCCCGTTGACAAACCATCGCCAATTCCAACTCCGCCAGTTCCATCTCGGCCGTG 1498
Query 1488 ACCAAAAGA-GTCA-CC-TCAACCAGATGATCC-TTACGATCAATCTCCAGTGACGAAAA 1543
|| || || | || || || ||| | ||| || | ||| |||| ||| | |
Sbjct 1499 ACGAACAGGCG-CAGCCCTCCTCCACCTCATCAATT-C---CAACCTCCGGTGTCCACTC 1553
Query 1544 GGCGC-AGCcctcctccggctccggtcaactctccaccaccaccagt-ttactccccacc 1601
| | | || || ||| || | ||| |||||| ||||| || || || || |||||
Sbjct 1554 TCCTCCA-CCG-CCACCGCCT--GTTCA-CTCTCCTCCACCGCCTGTCTTT-TCGCCACC 1607
Query 1602 acctcctcct--ccac-c-cgttcactctcccccgccgccagtccactctcctccaccac 1657
|| || ||| |||| | | | ||| | || || || |||||| ||||||| || ||||
Sbjct 1608 GCCACCGCCTGTCCACTCACCTCCAC-CGCCACCACCTCCAGTCTACTCTCCACCGCCAC 1666
Query 1658 caccgGTGTATTCGCCTCCGCCCCCACCCCCACCTGTCCACTCTCCTCCACCGCCTGTCT 1717
|||| | | | ||| || ||| |||||||| || || || ||||| || |||
Sbjct 1667 CACC--TCCAGTAAATTCC-CC---ACCGCCACCTGTTCAATCACCGCCACCCCCAGTCC 1720
Query 1718 TTTCACCACCACC---TCCAGT-CTATTCCCCGCCTCCCCCAGTCCACTCACCGCCTCCC 1773
||| |||||||| ||| || | | || ||||| || || || || || ||||| ||
Sbjct 1721 ATTCGCCACCACCCCCTCCGGTTC-ACTCACCGCCGCCACCGGTTCATTCCCCGCCGCCA 1779
Query 1774 CCAGT-CCA-TTCGC-CGCCGCCGCCAGCACCTGTTCACTCACCGCCTCCACCGGTTCA- 1829
|||| || ||| | ||||||||| || || ||||| || || ||||||| ||
Sbjct 1780 CCAGCACCTGTTCATTCACCGCCGCCACCA---GTACACTCGCCACCACCACCGGC-CAG 1835
Query 1830 TTcccccccGCCACCACCAC-CTGTTT-ATTCACCG-CCACCACCGGTCTTTTCTCCACC 1886
||| || || | | |||||| | | || |||| || ||| || |||||||||||||
Sbjct 1836 TTCACCACCACAAACACCACTC-GAACCAT-CACCATCC-CCAACGATCTTTTCTCCACC 1892
Query 1887 GCCGTCGCAATCTCCACCAGTAGTCTACTCTCCTCCGCCAAGACCGCCCAAGATCAACTC 1946
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 GCCGTCGCAATTTCCACCAGTAGTCTACTCTCCTCCGCCAAGACCGCCCAAGATCAACTC 1952
Query 1947 CCCACCAG-TCCAATCACCA 1965
|||||| | || || |||||
Sbjct 1953 CCCACCGGCTC-AAGCACCA 1971
Score = 134 bits (72), Expect = 3e-30
Identities = 93/103 (90%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 1273 GTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCAACACCAGTTCCAACT 1332
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1384 GTTCACAAACCAACGCCAGTTCCAACTACGCCGGTTCACAAACCATCGCCA-TTCCAACT 1442
Query 1333 ACGCCGGTTCAAAAACCATCGCCAGTTCCAACTACACCGGTTC 1375
||||| ||| | |||||||||||| |||||||| | || ||||
Sbjct 1443 ACGCCCGTTGACAAACCATCGCCAATTCCAACTCCGCCAGTTC 1485
> Ahg906331 jgi|Araly1|906331|Al_scaffold_0003_3459
Length=2223
Score = 894 bits (484), Expect = 0.0
Identities = 924/1133 (82%), Gaps = 43/1133 (4%)
Strand=Plus/Plus
Query 136 ACCGATACAGAAGCTGCCTTCATTGTGCAGCGACAACTTTTAACGTTACCAGACAACGGC 195
|||||| |||||||| | || |||| || ||||| || || |||||||| || || |||
Sbjct 58 ACCGATGCAGAAGCTTCATTTATTGCACAACGACAGCTCTTGACGTTACCTGAAAATGGC 117
Query 196 GAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCT-ACCTTTGCCAA-CACCA 253
||||||||||||||||| || || ||||||||||| |||| | || |||||||| || |
Sbjct 118 GAACTTCCTGATGATATTGAGTATGAGGTTGATCTTAAGG-TGACATTTGCCAACCA-TA 175
Query 254 GGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATATTTTCAGACCCAT 313
||||||||||||| ||||| ||||| || || ||||||||||| | | ||||||||| |
Sbjct 176 GGCTTAAGAGAGCGTATATTGCTCTCCAAGCCTGGAAAAAGGCGGTGTATTCAGACCCGT 235
Query 314 TTAACACCACGGGGAACTGGCATGGCCCACACGTGTGCGGCTACACCGGTGTGGTT-TGT 372
|||| |||||||| |||||||||||||| || ||||| |||||||| || || ||| ||
Sbjct 236 TTAATACCACGGGAAACTGGCATGGCCCTCATGTGTGTGGCTACACGGGCGT-GTTCTGC 294
Query 373 GCGCCAGCTCTTGATGATTCC-GATGTCACGGTTGTAGCTGGTGTTGACCTCAACGGTGC 431
|| |||||||||||||| ||| | || ||||||| || || ||||| | || |||||
Sbjct 295 GCCCCAGCTCTTGATGA-TCCTAACGTTGCGGTTGTGGCGGGGGTTGATTTGAATGGTGC 353
Query 432 GGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACAGATGTTGCAATGTTCCA 491
|||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 354 GGATATTGCAGGGCATTTACCGGCTGAACTTGGTTTGATGACAGATGTTGCAATGTTTCA 413
Query 492 TTTGAATTCAAACCGGTTTTGTGGGATCATACCTAAAAGCTTT-GAGAAGCTAAAG-CTA 549
||||||||| |||||||| ||||| |||||||||||||| ||| |||||| | || |||
Sbjct 414 TTTGAATTCGAACCGGTTCTGTGGTATCATACCTAAAAG-TTTCGAGAAG-TTGAGTCTA 471
Query 550 ATGCACGAATTCGATGTTAGTAACAACC-GTTTCGTTGGACCTTTCCCTAACGTCGTTCT 608
|||||||| |||||||| || ||||||| |||| ||||||||||||||| ||| || ||
Sbjct 472 ATGCACGAGTTCGATGTCAGCAACAACCGGTTT-GTTGGACCTTTCCCTTCCGTAGTCCT 530
Query 609 CTCTTGGCCTGATGTCAAATACTTCGACCTTAGGTTCAACGATTTCGAAGGTCAAGTCCC 668
||| ||||| | || || | | |||||||||| | ||| ||||||||||||||||||||
Sbjct 531 CTCATGGCCGGCCGTTAAGTTCATCGACCTTAGATACAATGATTTCGAAGGTCAAGTCCC 590
Query 669 TCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAGATTCACCTC 728
|||||||||||||||||| || || || ||||||||||||||| |||| |||||||| ||
Sbjct 591 TCCTGAGCTTTTCAAGAAGGATCTCGATGCCATTTTCTTGAACAACAACAGATTCACGTC 650
Query 729 GGTGATTCCTGAATCTCTAGGGGAATC-TCCGGCCTCGGTTGTGACTTTTGCTAACAATA 787
|||||||| ||||| || ||||| || | |||| || ||||| |||||| |||| |
Sbjct 651 TACCATTCCTGATTCTCTCGGAGAATCCTCAG-CCTCCGTCGTGACCTTTGCTCACAACA 709
Query 788 AATTCACCGGATGTATCCCTAAGA-GTATCGGAAACATGAAGAATCTCAACGAGATTGTC 846
|||||| ||| |||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct 710 AATTCAGCGGTTGTATCCCTA-GAAGTATTGGAAACATGAAGAATCTCAACGAGATTATC 768
Query 847 TTTATGGACAAT-GAT-TTAGGAGGTTGTTTCCCATCTGAAATCGGAAAGTTATCGAATG 904
|||| |||||| | | || || |||||||||||||| || ||||| ||| |||| ||||
Sbjct 769 TTTAAGGACAACAG-TCTT-GGCGGTTGTTTCCCATCAGAGATCGGGAAGCTATCCAATG 826
Query 905 T-AACG-GTTTTCGATGCAAGCAAGAACTCGTTCATAGGTCGT-CTCCCGACTAGCTTTG 961
| |||| |||| || || |||| |||||| |||| ||| || || || | |||||||
Sbjct 827 TGAACGTGTTT--GACGCTAGCATGAACTCCTTCACCGGT-GTTCTACCTCCAAGCTTTG 883
Query 962 TCGGG-TTAACGAG-CGTGGAGGAAATTGATATCTCCGGGAACAAACTCACCGGACTTG- 1018
||||| ||| | || | | || || |||||||||| ||||| |||||||| || ||
Sbjct 884 TCGGGCTTACC-AGTC-TAGAAGAGTTTGATATCTCTGGGAATAAACTCACTGGG-TTCA 940
Query 1019 TACC-GCATAACATTTGCCAGTTGCCTAATTTGGTGAACTTGACTTATTCTTACAATTAC 1077
| || | | || || ||| |||||||||| || || |||||||| || | |||||||||
Sbjct 941 TGCCAG-AGAATATCTGCAAGTTGCCTAAATTAGTTAACTTGACGTACGCCTACAATTAC 999
Query 1078 TTCAGTGGACAAGGAGGTTCTTGTGTTCCAGGTGGTAGTC-GCAAGGAGATTGCGTTGGA 1136
|||| || || || | ||| ||||| |||||| |||| | ||||||||||| |||||
Sbjct 1000 TTCAACGGGCAGGGTGATTCATGTGTCCCAGGT---AGTCAG-AAGGAGATTGCATTGGA 1055
Query 1137 TGACACACGCAATTGCTTGGCTTCTCGACCTGAGCAACGATCCGCCCAAG-AATGTGCGG 1195
||| |||||||| |||||| | ||||||| |||||||||| ||| ||| |||||||||
Sbjct 1056 TGATACACGCAACTGCTTGCCAGATCGACCTAAGCAACGATCAGCC-AAGGAATGTGCGG 1114
Query 1196 TTGTGATCAACCGCCCGGTTGATTGTAGCAAGGACAAGTGCGCTGGTGGCTCT 1248
||||||| | ||| || || |||||||| ||||||||||| |||||||| |||
Sbjct 1115 TTGTGATTAGCCGTCCAGTCGATTGTAGTAAGGACAAGTGTGCTGGTGGTTCT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5