BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33980.2
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491275 jgi|Araly1|491275|fgenesh2_kg.7__708__AT4G33980.1 952 0.0
> Ahg491275 jgi|Araly1|491275|fgenesh2_kg.7__708__AT4G33980.1
Length=898
Score = 952 bits (515), Expect = 0.0
Identities = 620/671 (92%), Gaps = 6/671 (1%)
Strand=Plus/Plus
Query 96 AGAGGAGGAGAAGCAACGATGGAGAATGATTGCACGGTGAATATTGTCTCTCTGGAGAAG 155
||| |||||| ||| ||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 15 AGA-GAGGAGCCGCAGCGATGGAGAATGATTACACGGTGAATATTGTTTCTCTGGAGATG 73
Query 156 GATCGCGATGTTTCGGAGGCGTCGGCTGAATCTCAGAGCGAGTCGACTCTTTCGAACTCG 215
||||| |||||| | ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 74 GATCGTGATGTTGCCGAGTCGTCGGCTGAATCTCAGAGCGAGTCGACTCTATCGAACTCG 133
Query 216 CTCGATTCCGGTGTTACGGCTGAGACCTCTCGTTCTGATGCTGATTCCAAACTGGATGAA 275
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 134 CTCGAGTCCGGTGTTACGGCTGAGACCTCTCGTGCTGATGCTGATTCCAAACTGGATGAG 193
Query 276 TGTACTGCTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 335
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TGTGCTGGTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 253
Query 336 GTTAGGCAATTATACTCCTTGCTTGGAGGTGGGACTCAGAGACTTTCTAGAACTCGTGAT 395
|||||||| || || ||||| |||||||| | |||||| |||||||||||||| ||||||
Sbjct 254 GTTAGGCAGTTGTATTCCTTCCTTGGAGGAGAGACTCAAAGACTTTCTAGAACCCGTGAT 313
Query 396 GTGCAGTCTAACTCTCATAAATCAG-CTGATCAGTTTACCGTCCTACAAAATGGTTGCTG 454
||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||| |||||
Sbjct 314 GTGCAGTCTAAGTCTCACAAATC-GACTGATCAGTTTACGGTCCTACAAAATGGCTGCTG 372
Query 455 GCAGAAGGTTAACTTTGGAAAGAAACAATCTTGTTTGGAGACTTCATCTGAGTTTCGTTT 514
|||||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 373 GCAGAATGTTAACTTTGGAAAGAAACAAGCTCATTTGGAGACTTCATCTGAATTTCGTTT 432
Query 515 TCACAGAAATTCATTGAGAAATAAGCCTGAAAATTCCAACGGAAATTACACCATGGGAAC 574
||| | ||| |||||||||| ||| ||||||||| |||| |||||||||||| |||||||
Sbjct 433 TCAGAAAAAATCATTGAGAAGTAAACCTGAAAATCCCAAGGGAAATTACACCGTGGGAAC 492
Query 575 TACTGTCCAAGGAGATGTGTTATGTCATGACGAAACCAAACACTCAGAGGCGTCAGGGCA 634
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 493 TGCTGTCCAAGGAGATGTGTTATGTCATGAAGAAACCAAACACTCAGAGGCGTCAGGGCA 552
Query 635 GAATTTCagagaagaagaagaagaagaagagaagggagaggtgagcaaaaaacgagaaag 694
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 553 GAATTTC--AG-AGAAGAAGAAGAAGAAGAGAAGGGAGAGGTGAGCAGAAAACGAGACAG 609
Query 695 agaagCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AGAAGCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 669
Query 755 GAAGCCCAGAA 765
|||||||||||
Sbjct 670 GAAGCCCAGAA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5