BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33985.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944516 jgi|Araly1|944516|scaffold_700745.1 721 0.0
> Ahg944516 jgi|Araly1|944516|scaffold_700745.1
Length=508
Score = 721 bits (390), Expect = 0.0
Identities = 460/493 (93%), Gaps = 8/493 (2%)
Strand=Plus/Plus
Query 56 AATGTCAAAACGCAA--C-GCGCCGTTTCAAGCACCGCCTAGACCGCTAGTAAAACAACA 112
|||||| |||||||| | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 20 AATGTCGAAACGCAACGCAGCGCCGTCGCAACCACCGCCTAGACCGCTAGTAAAACAACA 79
Query 113 TTCATGGTCACCGGACGCGGATCGAGAAGAAGCTTGGCTTCGAAAGAAGGGGAAGCAATC 172
||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||| || |
Sbjct 80 TTCGTGGTCACCGGATGCCGATCGAGAAGAAGCTTGGCTTCGGAAGAAGGGAAAGAAACC 139
Query 173 AT-TGGGCCGACTCGGTCGGAGTAAGAGCGTGACGGACGAAGATCTAGAAGAGCTCAAGG 231
|| | |||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 140 ATCT-GGCCGACTTGGTCGGAGTAAAAGTGTGACGGACGAAGATCTAGAAGAGCTCAAGG 198
Query 232 GATGCATCGAGCTTGGATTTGGATTCGAGCCGGATTCGCCTGATTTAGATCCGAGGCTCT 291
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 199 GATGCATCGAGCTTGGATTCGGATTCGAGCCGGATTCGCCTGATTTAGATCCAAGACTCT 258
Query 292 CGGAAACTCTTCCAGCTCTTGGTTTATACTGCGCCGTCAATAAACAGTATAGTAGCAGAT 351
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 259 CGGAAACTCTTCCAGCTCTTGGTTTATACTGTGCCGTTAATAAACAGTATAGTAGCAGAT 318
Query 352 TGTCACGGACTTCGTCTCTTTCGTCGATCGCATCGGAAGGTGAAAACAGCAATTCCAGCA 411
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 319 TGTCACGGACTTCGTCTCTTTCGTCTATCGCATCGGAAGGTGAAAACAGCAATTCGAGCA 378
Query 412 CGACGATCGTTGATCAAGGTGATGATCCGGAGACGATGAAGCTGAGGTTGAAGCAATGGG 471
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CCACGATCGTCGATCAAGGTGATGATCCGGAGACGATGAAGCTGAGGTTGAAGCAATGGG 438
Query 472 CTCAGGTGGTTGCTTGTTCGGTGAAGCAATTCTCCGGCGAACCGAATTGATGTTTGAATC 531
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 439 CTCAGGTGGTTGCTTGTTCGGTGAGGCAATTCTCCGGCGAACCAAATTGATGTTTGAAT- 497
Query 532 ATGATGATTAAGG 544
| ||||||||||
Sbjct 498 A--ATGATTAAGG 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5