BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34000.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491272 jgi|Araly1|491272|fgenesh2_kg.7__705__AT4G34000.1 2529 0.0
> Ahg491272 jgi|Araly1|491272|fgenesh2_kg.7__705__AT4G34000.1
Length=1894
Score = 2529 bits (1369), Expect = 0.0
Identities = 1710/1863 (92%), Gaps = 70/1863 (4%)
Strand=Plus/Plus
Query 118 TTTTGGAGATTTGTTTACTGATTAAAAGGAGATTCCTTTCCATTTTCAC---CATTTGCT 174
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 82 TTTTGGAGATTTGTTTTTTGATT-AAAGGAGATTCCTTTCCATTTTCACTATTATTTGCT 140
Query 175 CTG-TTT-G-ACTTCATTGTGC-T-TATATTTCATTT-AGATCTTTTGTTTGGGTTTAGC 228
||| ||| | |||||||||||| | ||||| || ||| |||||||||||| |||||||||
Sbjct 141 CTGTTTTAGTACTTCATTGTGCATATATATCTC-TTTCAGATCTTTTGTTGGGGTTTAGC 199
Query 229 TTTGGAACTGATAAAAATCTGATTTTGTCTCACGGCTTTG-GATTTGGTTCT-TAAATTT 286
||||||||||||||||||||||||||| || | |||| | ||||||| | |||||||
Sbjct 200 TTTGGAACTGATAAAAATCTGATTTTGGGTCTC--TTTTGAGTTTTGGTTTTCTAAATTT 257
Query 287 TGGTAAATATCCAGAAGCTTGATCCTCCTAGTTGTACGAAAGCTTGAGTAATGGGGTCTA 346
|||| | | | | || | ||| | | |||||| ||||||||||||||
Sbjct 258 TGGT-ACT-T-TA-AA-----A---TCC-------A-G-AAGCTT-AGTAATGGGGTCTA 295
Query 347 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGTGAGCAGCAGCCAACGGTGGGGACTA 406
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 296 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGT--G-AGCAGCCAACGGTGGGGACTA 352
Query 407 GTCTTCCATTGACTAGGCAGAACTCTGTGTTCTCGTTAACCTTTGATGAGTTTCAGAACT 466
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 GTCTTCCATTGACGAGACAGAACTCTGTGTTTTCGTTAACCTTTGATGAGTTTCAGAACT 412
Query 467 CATGGGGTGGTGGAATTGGGAAAGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 526
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 413 CATGGGGTGGTGGAATTGGCAAGGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 472
Query 527 ACATTTGGACTGCAGAGGAAAGTCATTCAATGATGGGAAACAATACCAGTTACACCAACA 586
||||||||||||| |||||||| || ||||| ||||||||||| || |||| || |||||
Sbjct 473 ACATTTGGACTGCTGAGGAAAGCCACTCAATCATGGGAAACAACACTAGTTTCAACAACA 532
Query 587 TCAGCAATGGTAATAGTGGAAACACTGTTATTAACGGCGGTGGTAACAACATTGGTGGGT 646
||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 533 TCAACAATGGTAATAGCGGAAACACTGTTATTAACGGCGGTGGTAACAACAATGGTGGGT 592
Query 647 TAGCTGTTGGTGTGGGAGGAGAAAGTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 706
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 593 TAGCTGTTGGTGTGGGAGAAGAAACTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 652
Query 707 AAGGTTCACTTACCTTGCCTCGGACGATTAGTCAGAAAAGGGTTGATGATGTCTGGAAGG 766
|||| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 653 AAGGGTCGCTTACCTTGCCTCGTACCATTAGTCAGAAGAGGGTTGATGATGTCTGGAAGG 712
Query 767 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGTTAATGGTGGGACAAGCGGAATTC 826
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||
Sbjct 713 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGGTAATGCTGGGACAGGCGGGATTC 772
Query 827 CGCAGAGGCAACAAACGCTGGGAGAGATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 886
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 CGCAGAGGCAACAAACGTTGGGAGAAATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 832
Query 887 TGGTTAGGGAAGAACCTCAACCGGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 946
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 TGGTTAGGGAAGAACCTCAACCCGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 892
Query 947 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTAGTAATGGGTTTGTTGCAAACCAACCTC 1006
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 893 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTGGTAATGGGTTTGTTGCTAACCAGCCTC 952
Query 1007 AAGATTTGTCAGGAAATGGAGT-AGCGGTGAGA-CAGGATCTGCTGACTGCTCAAACTCA 1064
| |||||||| ||||||||| | || ||||||| || ||||||||||| |||||||||||
Sbjct 953 ATGATTTGTCTGGAAATGGA-TCAGTGGTGAGACCA-GATCTGCTGACAGCTCAAACTCA 1010
Query 1065 GCCACTACAGATGCAGCAGCCACAGATGGTGCAGCAGCCACAGATGGTGCAGCAGCCGCA 1124
||||||||||||||||||| | || ||| || |||||||||||||||
Sbjct 1011 GCCACTACAGATGCAGCAG---C--------CA-CAG--AC----GGTGCAGCAGCCGCA 1052
Query 1125 ACAACTGATACAGACGCAGGAGAGGCCTTTTCCCAAACAGACCACTATAGCATTTTCCAA 1184
||| |||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1053 ACAGCTGATACAGAAGCAGGAGAGACCTTTTCCCAAACAGACCACTATCGCGTTTTCCAA 1112
Query 1185 CACTGTTGATGTGGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1244
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CACTGCTGATGTAGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1172
Query 1245 AATACTTGGAATTCATAACCATCCTATGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1304
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1173 AATACTTGGAATTCGTAACCATCTTGTGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1232
Query 1305 AACAGGAGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 AACAGGGGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1292
Query 1365 AAAGAGCGCCCTGGATGCATCTTTGTCCCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1293 AAAGAGCGCCCTGGATGCATCTTTGTCTCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1352
Query 1425 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1412
Query 1485 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1472
Query 1545 AATTGCGCAACTCAAAGAATTGAATGAAGAGTTGCAGAAGAAACAAGTTGAAATCATGGA 1604
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 1473 AATTGCGCAACTCAAAGAGTTAAATGAAGAGTTGCAGAGGAAACAAGTTGAAATCATGGA 1532
Query 1605 AAAGCAGAAAAATCAGCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1664
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1533 AAAGCAGAAAAACCAGCTCCTGGAGCCACTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1592
Query 1665 GCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAAGGAA 1724
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1593 GCAATGCTTGCGAAGGACATTAACGGGTCCCTGGTAGAGCCTATACTGGCGTCCAAGGAA 1652
Query 1725 CCCAACAAAGCGCCGAAGTTATAGAACAACTCAGAAGATAGAAAGCTAGCTTTGTACGTA 1784
| |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1653 CTCAACAAAGAGCCTAAGTTATAGAACAACTCAGAAAATAGAAAGCTAGCTTGGTATGTA 1712
Query 1785 GTTTAGGCAGGT-T--CTGTGGGTGATTGTAAATCTTGAAGTGTGGCGGATTTGACAGAG 1841
|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1713 GTTTAGGCAGGTGTTTCTGTGGGTGATTGTAAATCGTGAAGTGTGGCGGATTTGACAGAG 1772
Query 1842 ATAGATAAACACAT-ATCTGTTCTATTTTCCT-AA--ATCTTTTGGTTTTATCTTCCTGA 1897
||| |||||||| | ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 1773 ATATATAAACAC-TCATCTGTTCTATTTTCCTGAAGCATCTTTTGGTTTTATCGTCCTGA 1831
Query 1898 TGTAATGGATCTTTATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGAATTTAT 1957
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1832 TGTAATGGATCTTGATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGGATTTAT 1891
Query 1958 CTT 1960
|||
Sbjct 1892 CTT 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5